Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

19406080 .. 19407449

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGGATGTTAAGTGTCAGGGATGCTTCAACATAACCACTGTGTTCAGCCATTCTCAAACTGTTGTGGTATGTGGAAACTGTCAGACAGTTCTGTGCCAGCCCACCGGTGGTAAAGCGAGGCTACAAGAGGGATGCTCTTTCAGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

9.24

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	30 - 84	1.7e-26	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	46, 67
AluI	AGCT	2 cut(s)	46, 67
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	80
AsiGI	ACCGGT	1 cut(s)	206
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	80
BmsI	GCATC	2 cut(s)	113, 224
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	53, 68
Bsa29I	ATCGAT	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	4 cut(s)	31, 112, 128, 239
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	33
BshTI	ACCGGT	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	142, 163, 182, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	4 cut(s)	31, 112, 128, 239
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 79
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	31, 112, 128, 239
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	62
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	46, 67, 150, 202, 223
CviKI_1	RGCY	5 cut(s)	46, 67, 150, 202, 223
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	63, 104, 134, 172
FatI	CATG	1 cut(s)	102
FokI	GGATG	4 cut(s)	18, 119, 135, 246
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	106
HpaII	CCGG	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	38, 106
HpyCH4III	ACNGT	4 cut(s)	142, 163, 182, 190
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 79
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	54, 104, 212, 220, 229
LweI	GCATC	2 cut(s)	113, 224
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	64, 91
MhlI	GDGCHC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	213, 223
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	43, 79
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	106
PinAI	ACCGGT	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	43, 48, 69
SfaNI	GCATC	2 cut(s)	113, 224
SgrAI	CRCCGGYG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
SsiI	CCGC	1 cut(s)	35
TaaI	ACNGT	4 cut(s)	142, 163, 182, 190
TaqI	TCGA	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	20, 91
TspRI	CASTG	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.