Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

40001717 .. 40003415

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0234500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTTCAGATTCTCATGACCAGATTCCGGCCATAGGATTCACAATCAACTCGCGGGAGGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGATGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGTGTATGATAAGATACCTCCGCAGTTGAGAGCTGAAACCTTCTTTGTGTCAAGGCAACTTTTCAGCCTTCCACTTGAGAAAAAGAAAAAGAACCTTAATCCAAAGCCTTACCAGGGTTACCTTGCACCAACTGTCCAGGCTCCCTTGTATGAGAGCTTTGGCCTAGAGGAAGCCTCCAACTATGAATCCCTTCGATGCTTGACAGAAGAAATATCGCCCAATGGTCATGACCAGTTTTGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTAAAAGATATGATTAACTTGATGATTCTTGATAGTTATGGGTTGGGAGAGAAATCAAATTCGACTTTGCAGTCTAAGACACTGCTACGGATAATGAAATACCTGGCACCTCCTTCAAAGGACTACACTCAGGCTCTCCGGGCTCACACTGACAAGGGATTGGGCACAATTCTTTGTGATGATCAAGTTTCAGGTCTTGAAGTTGAAACCAAGGATGGACAATGGGTCAAATTGTCTCTTTCTCCTCGTTCCTTCGTCTTTCTTGTTGCAGATTCCCTCATGGCATGGAGCAATGGAAGAATGCATTCTGTGAAGCATCGAGTGATGATGCGTGGAGAAAAAGAACGATATTCTTTAGGAGCATTTGCAGTTCCATTGGAGGGTTCCATCATTAAGGCACAAAAGGAGCTAGTAGATGAAGAACATCCCCAAATTCTTAAAGATTTTGATTATACAGATTTTAGCAAGTTCTTCGCTTCAGAAAAAGGAAGGGCCATTGACCCAGAAAAGCAAGTTTTCGCATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

318

Amino Acids

36.14

Weight (kDa)

5.61

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 91	2.9e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 260	6e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 520
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 161
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	472, 846
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	4 cut(s)	28, 35, 254, 794
AgsI	TTSAA	4 cut(s)	137, 531, 614, 620
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	3 cut(s)	252, 276, 516
AluBI	AGCT	5 cut(s)	173, 297, 406, 415, 823
AluI	AGCT	5 cut(s)	173, 297, 406, 415, 823
Alw26I	GTCTC	1 cut(s)	654
AoxI	GGCC	3 cut(s)	30, 301, 906
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	472, 846
Asp700I	GAANNNNTTC	2 cut(s)	330, 718
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 906
AsuC2I	CCSGG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	581
BanI	GGYRCC	2 cut(s)	84, 520
BanII	GRGCYC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	94, 96, 623, 809
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BciT130I	CCWGG	3 cut(s)	254, 278, 518
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	305, 824
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	4 cut(s)	254, 278, 518, 554
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	64, 906
BmiI	GGNNCC	4 cut(s)	86, 282, 522, 799
BmrFI	CCNGG	4 cut(s)	254, 278, 518, 554
BmsI	GCATC	3 cut(s)	326, 732, 739
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	67, 253, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 35, 254, 794
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	3 cut(s)	254, 278, 518
BseDI	CCNNGG	3 cut(s)	67, 253, 624
BseGI	GGATG	3 cut(s)	415, 634, 838
BseLI	CCNNNNNNNGG	4 cut(s)	28, 35, 254, 794
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	32, 303, 908
BshNI	GGYRCC	2 cut(s)	84, 520
BsiSI	CCGG	2 cut(s)	29, 553
BslI	CCNNNNNNNGG	4 cut(s)	28, 35, 254, 794
BsmAI	GTCTC	1 cut(s)	654
BsmI	GAATGC	2 cut(s)	718, 720
BsnI	GGCC	3 cut(s)	32, 303, 908
Bsp1286I	GDGCHC	2 cut(s)	559, 581
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	2 cut(s)	55, 161
BspANI	GGCC	3 cut(s)	32, 303, 908
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	16, 367
BspLI	GGNNCC	4 cut(s)	86, 282, 522, 799
BspT107I	GGYRCC	2 cut(s)	84, 520
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	67, 253, 624
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	254, 278, 518
Bst4CI	ACNGT	2 cut(s)	274, 385
BstDEI	CTNAG	2 cut(s)	489, 543
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	415, 634, 838
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 554
BstNI	CCWGG	3 cut(s)	254, 278, 518
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	252, 276, 516, 552
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	32, 303, 908
BtsCI	GGATG	3 cut(s)	415, 634, 838
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	381, 494, 561
CciI	TCATGA	2 cut(s)	16, 367
Cfr13I	GGNCC	2 cut(s)	64, 906
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	17, 368, 694, 699
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	489, 543
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DrdI	GACNNNNNNGTC	1 cut(s)	484
DriI	GACNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	252, 276, 516
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	4 cut(s)	20, 371, 697, 702
FatI	CATG	4 cut(s)	16, 367, 693, 698
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	3 cut(s)	422, 641, 825
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	305, 824
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	32, 303, 908
HapII	CCGG	2 cut(s)	29, 553
Hin1II	CATG	4 cut(s)	20, 371, 697, 702
HinfI	GANTC	6 cut(s)	11, 25, 39, 326, 439, 686
HpaII	CCGG	2 cut(s)	29, 553
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	10, 895
Hpy188III	TCNNGA	5 cut(s)	17, 107, 368, 443, 611
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	6 cut(s)	190, 218, 341, 537, 676, 897
HpyCH4III	ACNGT	2 cut(s)	274, 385
HpyCH4V	TGCA	7 cut(s)	96, 266, 381, 484, 683, 718, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 554
HpyF3I	CTNAG	2 cut(s)	489, 543
Hsp92II	CATG	4 cut(s)	20, 371, 697, 702
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	286, 702, 773, 820
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	326, 732, 739
MaeI	CTAG	2 cut(s)	305, 824
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	359, 723, 845, 877
MhlI	GDGCHC	2 cut(s)	559, 581
MluCI	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
MmeI	TCCRAC	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	2 cut(s)	330, 718
MseI	TTAA	4 cut(s)	237, 429, 807, 852
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	29, 553
MspR9I	CCNGG	4 cut(s)	254, 278, 518, 554
Mva1269I	GAATGC	2 cut(s)	718, 720
MvaI	CCWGG	3 cut(s)	254, 278, 518
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	412, 554
NciI	CCSGG	1 cut(s)	554
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	20, 371, 697, 702
NlaIV	GGNNCC	4 cut(s)	86, 282, 522, 799
NsiI	ATGCAT	1 cut(s)	720
PagI	TCATGA	2 cut(s)	16, 367
PctI	GAATGC	2 cut(s)	718, 720
PdmI	GAANNNNTTC	2 cut(s)	330, 718
PfeI	GAWTC	6 cut(s)	11, 25, 39, 326, 439, 686
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	252, 276, 516
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	252, 276, 516
PspN4I	GGNNCC	4 cut(s)	86, 282, 522, 799
PspPI	GGNCC	2 cut(s)	64, 906
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	4 cut(s)	237, 429, 807, 852
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	64, 906
ScrFI	CCNGG	4 cut(s)	254, 278, 518, 554
SduI	GDGCHC	2 cut(s)	559, 581
SfaNI	GCATC	3 cut(s)	326, 732, 739
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
SsiI	CCGC	2 cut(s)	55, 161
SspMI	CTAG	2 cut(s)	305, 824
StyD4I	CCNGG	4 cut(s)	252, 276, 516, 552
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	274, 385
TaqI	TCGA	4 cut(s)	106, 334, 476, 733
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
TfiI	GAWTC	6 cut(s)	11, 25, 39, 326, 439, 686
Tru1I	TTAA	4 cut(s)	237, 429, 807, 852
Tru9I	TTAA	4 cut(s)	237, 429, 807, 852
TscAI	CASTG	3 cut(s)	388, 501, 568
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	339, 413, 524, 846
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	388, 501, 568
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	472, 846
XmnI	GAANNNNTTC	2 cut(s)	330, 718
XspI	CTAG	2 cut(s)	305, 824
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.