Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

16637106 .. 16638159

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGGTTTGGTGCTCTATCTAAAACTCCGTCTTCTCTAGAGGTTCCAGTTGTGGTCGCCGTTTGCTTCTTCCACGTTCATTCATCAATCAAGATGGTTCTTCAGAATGATATCGATTTGCTTCATCCACCAGCTGATCTGGAGAAGAGAAAGCACAAGCTCAAGCGGCTTGTGCAGACCCCAAACTCGTTCTTCATGGATGTCAAATGCCAGGGATGTTTCAATATAACTACTGTGTTCAGTCACTCGCAAACCGTTGTGGTGTGTGGGAACTGCCAGACAGTGTTGTGCCAGCCTACTGGTGGGCGTGCCAGGCTCACCGAGGGTTGCTCCTTCAGGAGGAAAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

9.3

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	61 - 115	7.3e-27	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AcuI	CTGAAG	2 cut(s)	86, 319
AfiI	CCNNNNNNNGG	2 cut(s)	302, 339
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	210, 311
AluBI	AGCT	2 cut(s)	134, 160
AluI	AGCT	2 cut(s)	134, 160
Alw21I	GWGCWC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	16
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	212, 313
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	212, 313
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	212, 313
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	211, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 339
Bse1I	ACTGG	2 cut(s)	47, 304
BseBI	CCWGG	2 cut(s)	212, 313
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	211, 321
BseGI	GGATG	3 cut(s)	124, 205, 221
BseLI	CCNNNNNNNGG	2 cut(s)	302, 339
BseNI	ACTGG	2 cut(s)	47, 304
BsgI	GTGCAG	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	302, 339
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	47, 304
BssECI	CCNNGG	2 cut(s)	211, 321
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	212, 313
Bst4CI	ACNGT	3 cut(s)	235, 256, 283
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	293, 309
BstENI	CCTNNNNNAGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	124, 205, 221
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 172, 313
BstNI	CCWGG	2 cut(s)	212, 313
BstSCI	CCNGG	2 cut(s)	210, 311
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	124, 205, 221
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	293, 309
ClaI	ATCGAT	1 cut(s)	114
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	5 cut(s)	134, 160, 169, 295, 316
CviKI_1	RGCY	5 cut(s)	134, 160, 169, 295, 316
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	86, 319
EcoNI	CCTNNNNNAGG	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	210, 311
EcoRV	GATATC	1 cut(s)	112
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	197, 227
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	3 cut(s)	111, 212, 228
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	4 cut(s)	38, 91, 140, 337
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	3 cut(s)	235, 256, 283
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 172, 313
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	5 cut(s)	24, 61, 92, 157, 184
MhlI	GDGCHC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	34, 316, 333
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	212, 313
MvaI	CCWGG	2 cut(s)	212, 313
MwoI	GCNNNNNNNGC	3 cut(s)	166, 172, 313
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	210, 311
PspGI	CCWGG	2 cut(s)	210, 311
PspN4I	GGNNCC	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	134
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	212, 313
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	8, 45, 78, 136, 162
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	210, 311
TaaI	ACNGT	3 cut(s)	235, 256, 283
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	68, 72, 113, 184
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	337
XbaI	TCTAGA	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.