Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

7549993 .. 7550918

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11060.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTGCTTCAGAACGACATCGATTTGCTTCATCCGCCAGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGAGGCTTGTGCAGACTCCCAACTCTTTTTTCATGGATGTTAAGTGCCAAGGATGCTTTAGCATAACCACCGTGTTCAGTCACTCACAAACAGTTGTGGTGTGCGGTAACTGCCAGACGGTGTTGTGCCAGCCTACTGGAGGACGCGCCAGGCTCACCGAAGGGCAGCGTTCTGGACCTTACCATGGGAGTGTTATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

91

Amino Acids

10.02

Weight (kDa)

8.99

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	2 cut(s)	35, 174
AfiI	CCNNNNNNNGG	2 cut(s)	209, 254
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	41, 46, 67
AluI	AGCT	3 cut(s)	41, 46, 67
Alw21I	GWGCWC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	118, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 254
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	118, 253
BseGI	GGATG	3 cut(s)	31, 112, 128
BseLI	CCNNNNNNNGG	2 cut(s)	209, 254
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	209, 254
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	35, 174
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	118, 253
BssT1I	CCWWGG	2 cut(s)	118, 253
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	142, 163, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	39, 200
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	31, 112, 128
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 43, 73, 123, 180
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	31, 112, 128
Cac8I	GCNNGC	2 cut(s)	39, 200
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	222
CviAII	CATG	2 cut(s)	103, 254
CviJI	RGCY	6 cut(s)	41, 46, 67, 76, 202, 223
CviKI_1	RGCY	6 cut(s)	41, 46, 67, 76, 202, 223
DdeI	CTNAG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	118, 253
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	118, 253
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	2 cut(s)	118, 253
FaeI	CATG	2 cut(s)	106, 257
FaiI	YATR	5 cut(s)	104, 134, 255, 266, 271
FatI	CATG	2 cut(s)	102, 253
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	3 cut(s)	18, 119, 135
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	236
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	106, 257
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	49, 70, 243
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	142, 163, 190
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 43, 73, 123, 180
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	106, 257
HspAI	GCGC	1 cut(s)	216
LpnPI	CCDG	7 cut(s)	51, 192, 197, 205, 212, 228, 232
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	149, 176
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	48, 66, 203
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	34, 43, 73, 123, 180
NcoI	CCATGG	1 cut(s)	253
NlaIII	CATG	2 cut(s)	106, 257
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	43, 48, 69, 250
SfaNI	GCATC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
SsiI	CCGC	2 cut(s)	35, 174
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	118, 253
TaaI	ACNGT	3 cut(s)	142, 163, 190
TaqI	TCGA	2 cut(s)	21, 48
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	20, 91
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.