Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

8141441 .. 8141827

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0097800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTCACTCACTTAGACAGTTCTATCGCTAATGCGTTTATCAAAGGGACTATAGATTTCATCTTTGGCAGTGCCGCTGTGGTGTTCCAAAACTGTTTGGTGGTTGTTAGGAAGCTGATTCCTGGTCAGCAAGTGATGATCACTGCACAGGGGAGAACAGACCCGAACCAAAACACCGGCATCTCATTGCAGAATTGTACCATAGTGGCTGCGCCTGATTTCAGCAAGGCTGAGAGGAAAAACTTCACTAATTTTTTGGGTAGGCCTAGGAGGAACTATTCAATAGTGATGAAGGCCTATATAGGGGACGTGATACACCCACAAGGGTGGTCAAAGTGGGATGAGTATAGTAGAATGGACACTGTCGAGAGTACATTGAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

9.06

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	11 - 122	9.5e-40	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AfaI	GTAC	3 cut(s)	199, 373, 382
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AoxI	GGCC	2 cut(s)	263, 294
ApeKI	GCWGC	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	214
AvrII	CCTAGG	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	138
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	75, 210
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	2 cut(s)	76, 211
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	265, 296
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	61, 320
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	61, 320
BsnI	GGCC	2 cut(s)	265, 296
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	265, 296
BspCNI	CTCAG	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	20, 95, 364
BstDEI	CTNAG	2 cut(s)	13, 231
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	265, 296
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	2 cut(s)	76, 141
BtsIMutI	CAGTG	3 cut(s)	76, 141, 360
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	198, 372, 381
CviJI	RGCY	5 cut(s)	115, 209, 230, 265, 296
CviKI_1	RGCY	5 cut(s)	115, 209, 230, 265, 296
CviQI	GTAC	3 cut(s)	198, 372, 381
DdeI	CTNAG	2 cut(s)	13, 231
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	266
Eco147I	AGGCCT	2 cut(s)	265, 296
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaiI	YATR	5 cut(s)	53, 203, 300, 302, 348
FaqI	GGGAC	2 cut(s)	61, 320
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	75, 210
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	75, 210
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	2 cut(s)	75, 210
HaeIII	GGCC	2 cut(s)	265, 296
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	20, 95, 364
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	146, 190
HpyF3I	CTNAG	2 cut(s)	13, 231
HpySE526I	ACGT	1 cut(s)	309
HspAI	GCGC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	108, 134, 135, 190, 228
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	309
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MluCI	AATT	2 cut(s)	193, 250
MnlI	CCTC	2 cut(s)	228, 264
MroXI	GAANNNNTTC	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	325
PceI	AGGCCT	2 cut(s)	265, 296
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	118
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	76, 211
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	199, 373, 382
RsaNI	GTAC	3 cut(s)	198, 372, 381
RseI	CAYNNNNRTG	1 cut(s)	325
SatI	GCNGC	2 cut(s)	75, 210
Sau3AI	GATC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	2 cut(s)	117, 312
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	193, 250
SseBI	AGGCCT	2 cut(s)	265, 296
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	267
StuI	AGGCCT	2 cut(s)	265, 296
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	20, 95, 364
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	193, 250
TatI	WGTACW	2 cut(s)	371, 380
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	118
TscAI	CASTG	3 cut(s)	76, 148, 367
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	49, 305
TspRI	CASTG	3 cut(s)	76, 148, 367
Tth111I	GACNNNGTC	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.