AT2G46470

inner membrane protein oxa1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007144
Physical Location & Seq
Forward (+)
19072277 .. 19075124
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46470.1

Sequence Viewer

Length: 1296 bp
ATGGCTACTTGCTTGCGTGGAATCACGAAGAGAGTTAATCTTCTACAGAGACGAGTTTATCCATCGTGTGGTCATCTAATTCGTGATGATAGAGATGAAACTAAATCTGGTTCTTCGGATACAATGATTCGTGAAGTCTTAGCACGTAATGGGACTAATAAGCTTAGCTCTATGTTTGCGGATAGGCATTATCAGTCGTTTGCTACTGGTCCGTTGGGTCTTGGATTGTCTTCGTGTCGGCATATGAGTTCTACACCACCAGAATGGTCTGATAAAGTTGATGGTATCGACTTTGTGGCTACGGAGGTTGTTCCCGATGAAATCATTGAAGCTGTGACCACCACAAGCCAAGCTGTTGTTCCTGCTATAAACGAGGTTGCTATTGCTGCTGCCGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGCTGTGCATTCCTTTACTGGCCTGAACTGGTGGGCTTCAATAGCCTTGACAACTGTTCTTATCCGTGGAGTTACAATACCTATTCTTTTGAATCAACTAAAGGCTACTTACAAACTCAATGTTCTGAGGCCACAACTGGAGGAGTTAAGACAAGAGATGAGCACTAAGGCTCAGGATCCTGAAGCCATGGCAGAAGGTCAAAGACGGATGCAATTATTGTTTAAAGAACATGGAGTAACTCCATTTACCCCCCTCAAAGGACTTATTATTCAAGGTCCCATCTTCATCAGCTTTTTCTTTGCGATCAGGAATATGGCCGAGAAAGTCCCATCATTTAAAACCGGGGGAACTCTTTGGTTTACTGATCTGACCACCACAGATACCACTTATATCTTGCCACTCCTCACTGCAGTGACTTTCTTGATTATGGTAGAGTCAAACATGCAGGAAGGTCTTGAAGGCAATCCAGTAGCTGGAACTATGAAGAAATTCTCAAGAATCATTGCCTTCCTTTCTATTCCAGTTTTGATTGGCATTGAAAAGGCATTGTTTTGTTACTGGCTTACTTCCAACCTATTTACTCTTGTGTATGGATTAACATTAAGACGTCCTGATGTGAGGAAGCTCTTGAATCTCCCAGATGTTGTCAACTCTTCTACTAGGCAGCCATCACCGTCTTCGCCTTTGCCATTTTCCTTTGCCGAGCCAAAAGACCAAAGTGTTGTTGCTCAAGAAAAACCTCCTATGTCCTCCGAGTCATCTTCAAGTGTTCCAGATAGAAGAATCTCACGGAGTTCAGTTCTGAATCAGAGAATCAGAACTCTGGAGAGACAACTCAAGGACCGAAAGATCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

431

Amino Acids

47.9

Weight (kDa)

9.28

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 155 - 344 3e-26 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1045
AccB7I CCANNNNNTGG 2 cut(s) 68, 908
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 605, 618
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 1 cut(s) 923
AcuI CTGAAG 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 1042
AfiI CCNNNNNNNGG 3 cut(s) 68, 692, 908
AgsI TTSAA 8 cut(s) 329, 474, 526, 707, 893, 974, 1066, 1200
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 7 cut(s) 163, 168, 332, 353, 726, 908, 1060
AluI AGCT 7 cut(s) 163, 168, 332, 353, 726, 908, 1060
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 2 cut(s) 43, 1258
AlwI GGATC 2 cut(s) 605, 618
AlwNI CAGNNNCTG 1 cut(s) 908
AoxI GGCC 3 cut(s) 454, 563, 750
ApeKI GCWGC 5 cut(s) 386, 389, 413, 421, 1099
ApoI RAATTY 1 cut(s) 923
Asp700I GAANNNNTTC 1 cut(s) 923
AspS9I GGNCC 3 cut(s) 209, 710, 1276
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 1098
AvaII GGWCC 3 cut(s) 209, 710, 1276
BamHI GGATCC 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 222, 1104
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 5 cut(s) 373, 376, 400, 433, 1111
BccI CCATC 5 cut(s) 70, 275, 722, 772, 1111
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 2 cut(s) 43, 1258
BfaI CTAG 1 cut(s) 1095
BfmI CTRYAG 2 cut(s) 44, 843
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 5 cut(s) 387, 390, 414, 422, 1100
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 5 cut(s) 388, 391, 415, 423, 1101
Bme1390I CCNGG 1 cut(s) 778
Bme18I GGWCC 3 cut(s) 209, 710, 1276
BmgT120I GGNCC 3 cut(s) 209, 710, 1276
BmiI GGNNCC 2 cut(s) 612, 712
BmrFI CCNGG 1 cut(s) 778
BmsI GCATC 2 cut(s) 424, 633
BpiI GAAGAC 2 cut(s) 222, 1104
BpmI CTGGAG 2 cut(s) 593, 1280
Bpu10I CCTNAGC 1 cut(s) 606
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 913, 1149, 1256
BpuMI CCSGG 1 cut(s) 778
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 1042
BsaJI CCNNGG 3 cut(s) 499, 621, 777
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 692, 908
Bse1I ACTGG 7 cut(s) 211, 457, 467, 576, 902, 956, 998
Bse3DI GCAATG 1 cut(s) 936
BseDI CCNNGG 3 cut(s) 499, 621, 777
BseGI GGATG 1 cut(s) 648
BseLI CCNNNNNNNGG 3 cut(s) 68, 692, 908
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 2 cut(s) 551, 620
BseNI ACTGG 7 cut(s) 211, 457, 467, 576, 902, 956, 998
BseRI GAGGAG 2 cut(s) 590, 827
BseXI GCAGC 5 cut(s) 373, 376, 400, 433, 1111
BshFI GGCC 3 cut(s) 456, 565, 752
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 1 cut(s) 777
BslFI GGGAC 3 cut(s) 166, 696, 746
BslI CCNNNNNNNGG 3 cut(s) 68, 692, 908
BsmAI GTCTC 2 cut(s) 43, 1258
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 3 cut(s) 166, 696, 746
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 3 cut(s) 456, 565, 752
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 4 cut(s) 610, 738, 799, 1284
Bsp1720I GCTNAGC 1 cut(s) 164
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 1 cut(s) 179
BspANI GGCC 3 cut(s) 456, 565, 752
BspCNI CTCAG 2 cut(s) 552, 619
BspLI GGNNCC 2 cut(s) 612, 712
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 2 cut(s) 605, 618
BsrDI GCAATG 1 cut(s) 936
BsrI ACTGG 7 cut(s) 211, 457, 467, 576, 902, 956, 998
BssECI CCNNGG 3 cut(s) 499, 621, 777
BssMI GATC 4 cut(s) 610, 738, 799, 1284
BssNI GRCGYC 1 cut(s) 1042
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 490, 1110
Bst6I CTCTTC 2 cut(s) 23, 1093
BstACI GRCGYC 1 cut(s) 1042
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 5 cut(s) 139, 164, 560, 600, 606
BstDSI CCRYGG 2 cut(s) 499, 621
BstF5I GGATG 1 cut(s) 648
BstKTI GATC 4 cut(s) 613, 741, 802, 1287
BstMAI GTCTC 2 cut(s) 43, 1258
BstMBI GATC 4 cut(s) 610, 738, 799, 1284
BstMWI GCNNNNNNNGC 3 cut(s) 386, 398, 476
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 776
BstSFI CTRYAG 2 cut(s) 44, 843
BstV1I GCAGC 5 cut(s) 373, 376, 400, 433, 1111
BstV2I GAAGAC 2 cut(s) 222, 1104
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 610
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 3 cut(s) 456, 565, 752
BtgI CCRYGG 2 cut(s) 499, 621
BtsCI GGATG 1 cut(s) 648
BtsI GCAGTG 2 cut(s) 840, 852
BtsIMutI CAGTG 2 cut(s) 840, 852
Cac8I GCNNGC 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 908
Cfr13I GGNCC 3 cut(s) 209, 710, 1276
CviAII CATG 3 cut(s) 622, 665, 877
DdeI CTNAG 5 cut(s) 139, 164, 560, 600, 606
DpnI GATC 4 cut(s) 612, 740, 801, 1286
DpnII GATC 4 cut(s) 610, 738, 799, 1284
DraI TTTAAA 2 cut(s) 658, 772
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 2 cut(s) 23, 1093
EarI CTCTTC 2 cut(s) 23, 1093
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 209, 710, 1276
Eco57I CTGAAG 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 3 cut(s) 625, 668, 880
FaqI GGGAC 3 cut(s) 166, 696, 746
FatI CATG 3 cut(s) 621, 664, 876
FauNDI CATATG 1 cut(s) 243
Fnu4HI GCNGC 5 cut(s) 387, 390, 414, 422, 1100
FokI GGATG 1 cut(s) 655
Fsp4HI GCNGC 5 cut(s) 387, 390, 414, 422, 1100
FspBI CTAG 1 cut(s) 1095
GluI GCNGC 5 cut(s) 387, 390, 414, 422, 1100
GsuI CTGGAG 2 cut(s) 593, 1280
HaeIII GGCC 3 cut(s) 456, 565, 752
HapII CCGG 1 cut(s) 777
Hin1I GRCGYC 1 cut(s) 1042
Hin1II CATG 3 cut(s) 625, 668, 880
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 161
HpaII CCGG 1 cut(s) 777
HphI GGTGA 1 cut(s) 1098
Hpy166II GTNNAC 2 cut(s) 795, 1084
Hpy188I TCNGA 8 cut(s) 118, 271, 561, 804, 1189, 1239, 1245, 1253
Hpy8I GTNNAC 2 cut(s) 795, 1084
HpyAV CCTTC 4 cut(s) 623, 878, 887, 952
HpyCH4III ACNGT 2 cut(s) 490, 1110
HpyCH4IV ACGT 2 cut(s) 145, 1042
HpyCH4V TGCA 5 cut(s) 421, 442, 646, 845, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 398, 476
HpyF3I CTNAG 5 cut(s) 139, 164, 560, 600, 606
HpySE526I ACGT 2 cut(s) 145, 1042
Hsp92I GRCGYC 1 cut(s) 1042
Hsp92II CATG 3 cut(s) 625, 668, 880
Kzo9I GATC 4 cut(s) 610, 738, 799, 1284
Lsp1109I GCAGC 5 cut(s) 373, 376, 400, 433, 1111
LweI GCATC 2 cut(s) 424, 633
MaeI CTAG 1 cut(s) 1095
MaeII ACGT 2 cut(s) 145, 1042
MaeIII GTNAC 5 cut(s) 334, 505, 670, 847, 989
MalI GATC 4 cut(s) 612, 740, 801, 1286
MboI GATC 4 cut(s) 610, 738, 799, 1284
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 3 cut(s) 78, 647, 923
MlyI GAGTC 2 cut(s) 878, 1199
MmeI TCCRAC 1 cut(s) 1029
MnlI CCTC 9 cut(s) 298, 367, 555, 568, 698, 848, 1047, 1185, 1195
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 6 cut(s) 36, 581, 657, 771, 1031, 1037
MslI CAYNNNNRTG 2 cut(s) 262, 845
MspI CCGG 1 cut(s) 777
MspR9I CCNGG 1 cut(s) 778
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 386, 398, 476
NciI CCSGG 1 cut(s) 778
NcoI CCATGG 1 cut(s) 621
NdeI CATATG 1 cut(s) 243
NdeII GATC 4 cut(s) 610, 738, 799, 1284
NlaIII CATG 3 cut(s) 625, 668, 880
NlaIV GGNNCC 2 cut(s) 612, 712
NmeAIII GCCGAG 2 cut(s) 778, 1162
NmuCI GTSAC 2 cut(s) 334, 847
NspI RCATGY 1 cut(s) 880
OliI CACNNNNGTG 1 cut(s) 845
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 9 cut(s) 21, 127, 395, 526, 933, 1066, 1218, 1240, 1248
PflMI CCANNNNNTGG 2 cut(s) 68, 908
PkrI GCNGC 5 cut(s) 388, 391, 415, 423, 1101
PleI GAGTC 2 cut(s) 877, 1198
PpsI GAGTC 2 cut(s) 877, 1198
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 710
Psp5II RGGWCCY 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 612, 712
PspPI GGNCC 3 cut(s) 209, 710, 1276
PspPPI RGGWCCY 1 cut(s) 710
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 1 cut(s) 610
RseI CAYNNNNRTG 2 cut(s) 262, 845
SaqAI TTAA 6 cut(s) 36, 581, 657, 771, 1031, 1037
SatI GCNGC 5 cut(s) 387, 390, 414, 422, 1100
Sau3AI GATC 4 cut(s) 610, 738, 799, 1284
Sau96I GGNCC 3 cut(s) 209, 710, 1276
SchI GAGTC 2 cut(s) 878, 1199
ScrFI CCNGG 1 cut(s) 778
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 2 cut(s) 424, 633
SfcI CTRYAG 2 cut(s) 44, 843
SinI GGWCC 3 cut(s) 209, 710, 1276
SmiMI CAYNNNNRTG 2 cut(s) 262, 845
SmlI CTYRAG 3 cut(s) 928, 1164, 1271
SmoI CTYRAG 3 cut(s) 928, 1164, 1271
Sse9I AATT 3 cut(s) 78, 647, 923
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 1095
StyD4I CCNGG 1 cut(s) 776
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 490, 1110
TaiI ACGT 2 cut(s) 148, 1045
TaqI TCGA 1 cut(s) 288
TaqII GACCGA 1 cut(s) 1293
TasI AATT 3 cut(s) 78, 647, 923
TfiI GAWTC 9 cut(s) 21, 127, 395, 526, 933, 1066, 1218, 1240, 1248
Tru1I TTAA 6 cut(s) 36, 581, 657, 771, 1031, 1037
Tru9I TTAA 6 cut(s) 36, 581, 657, 771, 1031, 1037
TscAI CASTG 2 cut(s) 847, 852
TseFI GTSAC 2 cut(s) 334, 847
TseI GCWGC 5 cut(s) 386, 389, 413, 421, 1099
Tsp45I GTSAC 2 cut(s) 334, 847
TspDTI ATGAA 4 cut(s) 111, 333, 709, 932
TspGWI ACGGA 5 cut(s) 201, 317, 488, 655, 1240
TspRI CASTG 2 cut(s) 847, 852
Van91I CCANNNNNTGG 2 cut(s) 68, 908
VpaK11BI GGWCC 3 cut(s) 209, 710, 1276
XapI RAATTY 1 cut(s) 923
XceI RCATGY 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 1 cut(s) 1095
ZraI GACGTC 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.