Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

38256461 .. 38258412

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGCCTAGTAGTGCGAGTTCAACTCTCAGGGTCATAGTCAGCCCAAGTCCCGTCTACTCTGGCCACAGTAGACAACACCTCAAACGCGACCAAAAATTTCATGGAGGACAGTTTGCCAATTCCACCTTACAATTAAAAGCGACCATAACCATTAAGATTTGTTCACTTAACCTCAGTATCAGTATCATCATCCCTGTAGTTCGCAGCCAGTGTATTAAAGACCACCAACTATCATTTCTCCAATTTAAGAAAAGCCTCGTGATCGATCCTTATTTCAATCCTTCCGCCAAGCTTATTTCTTGGAACGCGAGTAGTGATTGCTGTTCTTGGGTGGGCGTCACTTGCAACCGTAATGGGCGTGTTCTGGGTCTTGACATAAGCAGTGACCATATCTTAGCTGGAATTGACAATTCCAGAAGGCAAATTCTAATCGAGATTTCTCGCTTGAGGAAGTTGGAAGTTCTCGATTTTTCTAACTATTATTTTAATAACCCCTACAGCCTTGGAAGTCCAAATTTATACATGTTGGTTCACAACCTCACTGAGCTTTCTCAGTTATATCTTGATGGTGTCCTAATATCAGAACAGGGGAGTGAGTTATGCCGAGCCATATCATCTTCCATTCCCAACCTCCAGGTCTTGAGCATGTCCTATTGTGATCTTTCAGGCCCTCTTCTCGAGTCCCTTGGTCAGCTTCAATCTTTATCCGAAATTAGGTTGGACGGGAACAATATCTCTGAGCCAGTTCCAGGTTTCTTTGCCAACTTTTCAAACTTGACTATCTTGAGTCTCCAAGGATGCAGGTTGCATGGAACATTACCCAAAGTGATCTTTCACTTACCTTCTCTACAGTATATTGACCTTTCATATAATGACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGGATCTCTTGAGTACCTTTGCAATTTCAAAGGACTGATTCCCAAGTCAATCAAAAACCATACACAATTGGTTTCTTTGTCAATGTCTGGTAACAAGTTGGAAGGTTCAATTCCGTCATTTAGTGGGGCCAAGAATGTTGTCAACATAGACCTTTCCGACAATGGTCTAACAGGTACTATCAACTTCAGCCACTGGAGAAACCTTACTAAGCTGTCTTCTCTCATTTTGAGCTCTAACAAGCTCGATGGGGATATCTTCTCTAACAAGCTTGATGGGGATGTCCCAGCGTCTTTGTTTTCTCTTCCCCTATTGTATCATCTAGATCTTTCTAGCAATCAATTCTCTGGTCCATTCCCTGAAATTTTAAATGTGTCTTCCCACTTGCTGAATGGTCCTGATCTTGAACTTGATTTGAGTAGCAACAATCTAGAAGGGCCACTGCCTATGTCTATCTTTAGCTTGCGAGGTCTTAAGGCTCTAGATCTTTCTTCAAATAATTTAAGTGGCTCGTTTCCTCTTGATGGTCTATACCAGCTGAGATATCTTTTTGAACTTGATCTTTCACACAATAACTTGTTTCTTAGCCATGATCATACCAATTTCTCATATTCCTCATTTTCTCAACAATCTACTTTGAGCTTGGTGTCATTGAAATTGAGAAAATTTCCTAATTTCTTGAGAAATCAATCTAACTTGCAAAGATTGGACATTTCAGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

544

Amino Acids

60.28

Weight (kDa)

6.56

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	79 - 116	3.1e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	234 - 292	2.1e-08	Leucine rich repeat
LRR_8	PF13855	439 - 496	5.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	792
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccI	GTMKAC	2 cut(s)	54, 70
AccII	CGCG	2 cut(s)	87, 308
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	2 cut(s)	260, 922
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	6 cut(s)	95, 423, 514, 899, 1272, 1574
AcuI	CTGAAG	1 cut(s)	1081
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	926, 1087
AfiI	CCNNNNNNNGG	4 cut(s)	714, 749, 911, 1433
AflII	CTTAAG	1 cut(s)	1382
AflIII	ACRYGT	1 cut(s)	522
AjnI	CCWGG	2 cut(s)	633, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
Alw21I	GWGCWC	1 cut(s)	1145
Alw26I	GTCTC	1 cut(s)	794
AlwI	GGATC	2 cut(s)	260, 922
AlwNI	CAGNNNCTG	1 cut(s)	1104
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	4 cut(s)	61, 667, 1038, 1346
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	6 cut(s)	95, 423, 514, 899, 1272, 1574
AspS9I	GGNCC	5 cut(s)	668, 1038, 1259, 1304, 1346
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	1259, 1304
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BalI	TGGCCA	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	1145
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	1119, 1278
Bbv12I	GWGCWC	1 cut(s)	1145
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	5 cut(s)	560, 878, 1151, 1178, 1427
BciT130I	CCWGG	2 cut(s)	635, 750
BclI	TGATCA	1 cut(s)	1501
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	6 cut(s)	6, 1232, 1242, 1340, 1391, 1633
BfmI	CTRYAG	3 cut(s)	195, 496, 848
BfrI	CTTAAG	1 cut(s)	1382
BfuAI	ACCTGC	1 cut(s)	792
BglII	AGATCT	2 cut(s)	1234, 1393
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	635, 750
Bme18I	GGWCC	2 cut(s)	1259, 1304
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	5 cut(s)	668, 1038, 1259, 1304, 1346
BmiI	GGNNCC	2 cut(s)	889, 1039
BmrFI	CCNGG	2 cut(s)	635, 750
BmsI	GCATC	1 cut(s)	788
BoxI	GACNNNNGTC	1 cut(s)	1074
BpiI	GAAGAC	2 cut(s)	1119, 1278
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	2 cut(s)	617, 1126
BpuEI	CTTGAG	5 cut(s)	466, 661, 805, 941, 1609
Bsa29I	ATCGAT	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	502, 685, 793, 905
Bsc4I	CCNNNNNNNGG	4 cut(s)	714, 749, 911, 1433
Bse1I	ACTGG	3 cut(s)	208, 743, 1109
BseBI	CCWGG	2 cut(s)	635, 750
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	4 cut(s)	502, 685, 793, 905
BseGI	GGATG	3 cut(s)	189, 803, 1195
BseLI	CCNNNNNNNGG	4 cut(s)	714, 749, 911, 1433
BseMII	CTCAG	6 cut(s)	40, 187, 534, 566, 729, 1439
BseNI	ACTGG	3 cut(s)	208, 743, 1109
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	1195
Bsh1236I	CGCG	2 cut(s)	87, 308
BshFI	GGCC	4 cut(s)	63, 669, 1040, 1348
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	1145
BsiHKCI	CYCGRG	1 cut(s)	677
BslFI	GGGAC	3 cut(s)	33, 667, 1178
BslI	CCNNNNNNNGG	4 cut(s)	714, 749, 911, 1433
BsmAI	GTCTC	1 cut(s)	794
BsmFI	GGGAC	3 cut(s)	33, 667, 1178
BsnI	GGCC	4 cut(s)	63, 669, 1040, 1348
BsoBI	CYCGRG	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	1145
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	4 cut(s)	63, 669, 1040, 1348
BspCNI	CTCAG	6 cut(s)	39, 186, 535, 565, 730, 1440
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	87, 308
BspLI	GGNNCC	2 cut(s)	889, 1039
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	260, 922
BspTI	CTTAAG	1 cut(s)	1382
BsrI	ACTGG	3 cut(s)	208, 743, 1109
BssECI	CCNNGG	4 cut(s)	502, 685, 793, 905
BssNI	GRCGYC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	4 cut(s)	502, 685, 793, 905
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	635, 750
Bst4CI	ACNGT	4 cut(s)	68, 111, 350, 852
Bst6I	CTCTTC	2 cut(s)	678, 1218
BstACI	GRCGYC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	1382
BstC8I	GCNNGC	1 cut(s)	1373
BstDEI	CTNAG	9 cut(s)	26, 173, 394, 543, 552, 738, 1119, 1448, 1493
BstF5I	GGATG	3 cut(s)	189, 803, 1195
BstFNI	CGCG	2 cut(s)	87, 308
BstMAI	GTCTC	1 cut(s)	794
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	2 cut(s)	635, 750
BstNSI	RCATGY	2 cut(s)	526, 649
BstPAI	GACNNNNGTC	1 cut(s)	1074
BstSCI	CCNGG	2 cut(s)	633, 748
BstSFI	CTRYAG	3 cut(s)	195, 496, 848
BstUI	CGCG	2 cut(s)	87, 308
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	2 cut(s)	1119, 1278
BstX2I	RGATCY	3 cut(s)	914, 1234, 1393
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstYI	RGATCY	3 cut(s)	914, 1234, 1393
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	63, 669, 1040, 1348
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	189, 803, 1195
BtsI	GCAGTG	2 cut(s)	388, 1349
BtsIMutI	CAGTG	5 cut(s)	215, 388, 540, 1102, 1349
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	1373
CaiI	CAGNNNCTG	1 cut(s)	1104
Cfr13I	GGNCC	5 cut(s)	668, 1038, 1259, 1304, 1346
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	2 cut(s)	325, 1188
Csp6I	GTAC	2 cut(s)	925, 1086
CviAII	CATG	5 cut(s)	101, 523, 646, 809, 1499
CviQI	GTAC	2 cut(s)	925, 1086
DdeI	CTNAG	9 cut(s)	26, 173, 394, 543, 552, 738, 1119, 1448, 1493
DraI	TTTAAA	1 cut(s)	1278
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	678, 1218
EarI	CTCTTC	2 cut(s)	678, 1218
EciI	GGCGGA	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	1143
Eco130I	CCWWGG	4 cut(s)	502, 685, 793, 905
Eco24I	GRGCYC	1 cut(s)	1145
Eco32I	GATATC	2 cut(s)	1165, 1454
Eco47I	GGWCC	2 cut(s)	1259, 1304
Eco53kI	GAGCTC	1 cut(s)	1143
Eco57I	CTGAAG	1 cut(s)	1081
Eco88I	CYCGRG	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	1143
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	633, 748
EcoRV	GATATC	2 cut(s)	1165, 1454
EcoT14I	CCWWGG	4 cut(s)	502, 685, 793, 905
EcoT38I	GRGCYC	1 cut(s)	1145
ErhI	CCWWGG	4 cut(s)	502, 685, 793, 905
FaeI	CATG	5 cut(s)	104, 526, 649, 812, 1502
FaqI	GGGAC	3 cut(s)	33, 667, 1178
FatI	CATG	5 cut(s)	100, 522, 645, 808, 1498
FbaI	TGATCA	1 cut(s)	1501
FblI	GTMKAC	2 cut(s)	54, 70
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	3 cut(s)	176, 810, 1202
FriOI	GRGCYC	1 cut(s)	1145
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	6 cut(s)	6, 1232, 1242, 1340, 1391, 1633
GluI	GCNGC	1 cut(s)	205
GsaI	CCCAGC	1 cut(s)	1199
GsuI	CTGGAG	2 cut(s)	617, 1126
HaeIII	GGCC	4 cut(s)	63, 669, 1040, 1348
HgaI	GACGC	2 cut(s)	325, 1188
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	104, 526, 649, 812, 1502
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	2 cut(s)	290, 1178
HinfI	GANTC	3 cut(s)	680, 787, 949
Hpy166II	GTNNAC	5 cut(s)	55, 71, 164, 532, 1054
Hpy188I	TCNGA	5 cut(s)	583, 709, 739, 1069, 1627
Hpy8I	GTNNAC	5 cut(s)	55, 71, 164, 532, 1054
HpyAV	CCTTC	5 cut(s)	291, 411, 852, 1007, 1337
HpyCH4III	ACNGT	4 cut(s)	68, 111, 350, 852
HpyCH4V	TGCA	5 cut(s)	345, 801, 808, 933, 1609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	9 cut(s)	26, 173, 394, 543, 552, 738, 1119, 1448, 1493
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	104, 526, 649, 812, 1502
Ksp22I	TGATCA	1 cut(s)	1501
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	6 cut(s)	6, 1232, 1242, 1340, 1391, 1633
MaeIII	GTNAC	3 cut(s)	337, 383, 1001
MboII	GAAGA	7 cut(s)	609, 665, 1119, 1159, 1205, 1278, 1392
MfeI	CAATTG	1 cut(s)	977
MflI	RGATCY	3 cut(s)	914, 1234, 1393
MhlI	GDGCHC	1 cut(s)	1145
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	689, 796
MmeI	TCCRAC	4 cut(s)	435, 699, 990, 1092
Mox20I	TGGCCA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	9 cut(s)	134, 153, 168, 216, 246, 486, 1277, 1383, 1412
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	1447
MspCI	CTTAAG	1 cut(s)	1382
MspR9I	CCNGG	2 cut(s)	635, 750
MunI	CAATTG	1 cut(s)	977
MvaI	CCWGG	2 cut(s)	635, 750
MvnI	CGCG	2 cut(s)	87, 308
MwoI	GCNNNNNNNGC	1 cut(s)	342
NlaIII	CATG	5 cut(s)	104, 526, 649, 812, 1502
NlaIV	GGNNCC	2 cut(s)	889, 1039
NmeAIII	GCCGAG	1 cut(s)	629
NmuCI	GTSAC	2 cut(s)	337, 383
NspI	RCATGY	2 cut(s)	526, 649
PaeR7I	CTCGAG	1 cut(s)	677
PciI	ACATGT	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	949
PflMI	CCANNNNNTGG	1 cut(s)	911
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	688, 795
PpsI	GAGTC	2 cut(s)	688, 795
PscI	ACATGT	1 cut(s)	522
PshAI	GACNNNNGTC	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	1145
Psp6I	CCWGG	2 cut(s)	633, 748
PspFI	CCCAGC	1 cut(s)	1195
PspGI	CCWGG	2 cut(s)	633, 748
PspN4I	GGNNCC	2 cut(s)	889, 1039
PspPI	GGNCC	5 cut(s)	668, 1038, 1259, 1304, 1346
PsrI	GAACNNNNNNTAC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	1104
PsuI	RGATCY	3 cut(s)	914, 1234, 1393
PvuII	CAGCTG	1 cut(s)	1447
RsaI	GTAC	2 cut(s)	926, 1087
RsaNI	GTAC	2 cut(s)	925, 1086
SacI	GAGCTC	1 cut(s)	1145
SaqAI	TTAA	9 cut(s)	134, 153, 168, 216, 246, 486, 1277, 1383, 1412
SatI	GCNGC	1 cut(s)	205
Sau96I	GGNCC	5 cut(s)	668, 1038, 1259, 1304, 1346
SchI	GAGTC	2 cut(s)	689, 796
ScrFI	CCNGG	2 cut(s)	635, 750
SduI	GDGCHC	1 cut(s)	1145
SfaNI	GCATC	1 cut(s)	788
SfcI	CTRYAG	3 cut(s)	195, 496, 848
Sfr274I	CTCGAG	1 cut(s)	677
SinI	GGWCC	2 cut(s)	1259, 1304
SlaI	CTCGAG	1 cut(s)	677
SmlI	CTYRAG	7 cut(s)	445, 640, 677, 784, 920, 1382, 1588
SmoI	CTYRAG	7 cut(s)	445, 640, 677, 784, 920, 1382, 1588
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	6 cut(s)	6, 1232, 1242, 1340, 1391, 1633
SstI	GAGCTC	1 cut(s)	1145
StyD4I	CCNGG	2 cut(s)	633, 748
StyI	CCWWGG	4 cut(s)	502, 685, 793, 905
TaaI	ACNGT	4 cut(s)	68, 111, 350, 852
TaqI	TCGA	5 cut(s)	264, 432, 465, 678, 1155
TfiI	GAWTC	1 cut(s)	949
Tru1I	TTAA	9 cut(s)	134, 153, 168, 216, 246, 486, 1277, 1383, 1412
Tru9I	TTAA	9 cut(s)	134, 153, 168, 216, 246, 486, 1277, 1383, 1412
TscAI	CASTG	5 cut(s)	215, 388, 547, 1109, 1356
TseFI	GTSAC	2 cut(s)	337, 383
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	2 cut(s)	337, 383
TspDTI	ATGAA	2 cut(s)	89, 855
TspGWI	ACGGA	1 cut(s)	1014
TspRI	CASTG	5 cut(s)	215, 388, 547, 1109, 1356
Van91I	CCANNNNNTGG	1 cut(s)	911
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	2 cut(s)	1259, 1304
XapI	RAATTY	6 cut(s)	95, 423, 514, 899, 1272, 1574
XbaI	TCTAGA	3 cut(s)	1231, 1339, 1390
XceI	RCATGY	2 cut(s)	526, 649
XcmI	CCANNNNNNNNNTGG	3 cut(s)	98, 395, 1298
XhoI	CTCGAG	1 cut(s)	677
XmiI	GTMKAC	2 cut(s)	54, 70
XspI	CTAG	6 cut(s)	6, 1232, 1242, 1340, 1391, 1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.