Rh1CG401400

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007144
Physical Location & Seq
Reverse (-)
66742788 .. 66743402
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG401400.1

Sequence Viewer

Length: 615 bp
ATGTCAACCACGATTGGTGATGGGTCTGATAAGATGGATGACATTGGATATGTTGCGGAGGTTTTTACAGATAAGACTGTGGAAGTAGTTACCTCCCAAGGACCGGCAGTGAGTGAAGTGGCTGTTGCTGCAGCAGATTCTTTCTTGCCTGTTGCTGGCCTACAATACTTGATCGATTTCGTTCATTCTCTTACCGGATTGAATTGGTGGGCATCAATAGCTTTAACAACTATTTTTATTCGAGTGGCTACAATTCCTCTTCTTATTGATCAACTCAGGGCTACTACAAAACTCAATTTGATGAGGCCTCGTTTAGAGCAGTTGAAACAAGAGATGCAAAATATGGAAGCAGATCCTGAGGTTTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGAATACGAAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTATTAGAAACAAGGCTGAGAAAGTTCCGTCTTTTCAAAATGGTGGAGCTCTCTGGTTTACTGATCTCACAACTCCAGATAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

204

Amino Acids

22.76

Weight (kDa)

4.74

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 69 - 202 2.6e-20 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclWI GGATC 3 cut(s) 347, 562, 608
AfiI CCNNNNNNNGG 2 cut(s) 103, 155
AgsI TTSAA 5 cut(s) 202, 325, 433, 449, 515
AluBI AGCT 3 cut(s) 221, 468, 527
AluI AGCT 3 cut(s) 221, 468, 527
Alw21I GWGCWC 1 cut(s) 529
AlwI GGATC 3 cut(s) 347, 562, 608
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 2 cut(s) 157, 305
ApeKI GCWGC 2 cut(s) 128, 131
AspS9I GGNCC 2 cut(s) 101, 452
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 2 cut(s) 101, 452
AxyI CCTNAGG 1 cut(s) 357
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 115, 143
BccI CCATC 3 cut(s) 14, 28, 382
BclI TGATCA 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
Bme18I GGWCC 2 cut(s) 101, 452
BmgT120I GGNCC 2 cut(s) 101, 452
BmsI GCATC 2 cut(s) 221, 324
BpmI CTGGAG 1 cut(s) 537
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 155
Bse118I RCCGGY 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 594
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 43, 390
BseLI CCNNNNNNNGG 2 cut(s) 103, 155
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 3 cut(s) 289, 348, 486
BseXI GCAGC 2 cut(s) 115, 143
BshFI GGCC 2 cut(s) 159, 307
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 2 cut(s) 104, 195
BslI CCNNNNNNNGG 2 cut(s) 103, 155
BsnI GGCC 2 cut(s) 159, 307
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 6 cut(s) 171, 268, 352, 541, 567, 600
BspACI CCGC 1 cut(s) 56
BspANI GGCC 2 cut(s) 159, 307
BspCNI CTCAG 3 cut(s) 288, 349, 487
BspDI ATCGAT 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 3 cut(s) 347, 562, 608
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 6 cut(s) 171, 268, 352, 541, 567, 600
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 79, 607
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 157, 563
BstDEI CTNAG 3 cut(s) 275, 357, 495
BstF5I GGATG 2 cut(s) 43, 390
BstKTI GATC 6 cut(s) 174, 271, 355, 544, 570, 603
BstMBI GATC 6 cut(s) 171, 268, 352, 541, 567, 600
BstMWI GCNNNNNNNGC 2 cut(s) 128, 218
BstNSI RCATGY 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 115, 143
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 174
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 2 cut(s) 159, 307
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 2 cut(s) 43, 390
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 157, 563
CaiI CAGNNNCTG 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 101, 452
ClaI ATCGAT 1 cut(s) 174
CviAII CATG 2 cut(s) 401, 562
CviJI RGCY 9 cut(s) 122, 159, 221, 248, 281, 307, 468, 494, 527
CviKI_1 RGCY 9 cut(s) 122, 159, 221, 248, 281, 307, 468, 494, 527
DdeI CTNAG 3 cut(s) 275, 357, 495
DpnI GATC 6 cut(s) 173, 270, 354, 543, 569, 602
DpnII GATC 6 cut(s) 171, 268, 352, 541, 567, 600
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 101, 452
Eco53kI GAGCTC 1 cut(s) 527
Eco81I CCTNAGG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 404, 565
FaiI YATR 4 cut(s) 51, 344, 402, 563
FatI CATG 2 cut(s) 400, 561
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 2 cut(s) 50, 397
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 129, 132
GluI GCNGC 2 cut(s) 129, 132
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 159, 307
HapII CCGG 2 cut(s) 104, 195
Hin1II CATG 2 cut(s) 404, 565
HincII GTYRAC 2 cut(s) 6, 610
HindII GTYRAC 2 cut(s) 6, 610
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 104, 195
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 6, 537, 610
Hpy188I TCNGA 3 cut(s) 28, 378, 582
Hpy188III TCNNGA 3 cut(s) 356, 554, 598
Hpy8I GTNNAC 3 cut(s) 6, 537, 610
HpyAV CCTTC 2 cut(s) 365, 581
HpyCH4III ACNGT 2 cut(s) 79, 607
HpyCH4V TGCA 2 cut(s) 131, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 218
HpyF3I CTNAG 3 cut(s) 275, 357, 495
Hsp92II CATG 2 cut(s) 404, 565
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 6 cut(s) 171, 268, 352, 541, 567, 600
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 9 cut(s) 117, 141, 162, 208, 262, 369, 517, 567, 583
Lsp1109I GCAGC 2 cut(s) 115, 143
LweI GCATC 2 cut(s) 221, 324
MaeIII GTNAC 2 cut(s) 88, 412
MalI GATC 6 cut(s) 173, 270, 354, 543, 569, 602
MboI GATC 6 cut(s) 171, 268, 352, 541, 567, 600
MboII GAAGA 1 cut(s) 251
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 5 cut(s) 202, 252, 295, 428, 576
MnlI CCTC 6 cut(s) 52, 103, 267, 297, 318, 352
MseI TTAA 2 cut(s) 224, 365
MspI CCGG 2 cut(s) 104, 195
MunI CAATTG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 128, 218
NdeII GATC 6 cut(s) 171, 268, 352, 541, 567, 600
NlaIII CATG 2 cut(s) 404, 565
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 565
PaeI GCATGC 1 cut(s) 565
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 130, 133
PpuMI RGGWCCY 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 452
PspPI GGNCC 2 cut(s) 101, 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 352
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 224, 365
SatI GCNGC 2 cut(s) 129, 132
Sau3AI GATC 6 cut(s) 171, 268, 352, 541, 567, 600
Sau96I GGNCC 2 cut(s) 101, 452
SduI GDGCHC 1 cut(s) 529
SetI ASST 8 cut(s) 63, 95, 223, 363, 376, 454, 470, 529
SfaNI GCATC 2 cut(s) 221, 324
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 101, 452
SphI GCATGC 1 cut(s) 565
Sse9I AATT 5 cut(s) 202, 252, 295, 428, 576
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 56
SstI GAGCTC 1 cut(s) 529
StuI AGGCCT 1 cut(s) 307
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 79, 607
TaqI TCGA 2 cut(s) 174, 241
TasI AATT 5 cut(s) 202, 252, 295, 428, 576
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 224, 365
Tru9I TTAA 2 cut(s) 224, 365
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 128, 131
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 173, 417, 433, 451
TspGWI ACGGA 2 cut(s) 397, 495
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 101, 452
XceI RCATGY 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.