Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

38260901 .. 38261419

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGGATCTCTTGAGTACCTGTATCGATCTAACCTTGACAAAATTTTCAGGGTTATTGCCAAAGTCTATTGGCAATCTCAAAATGTTGTCCACCATACATATTCAGAGTTGCAATTTCAAAGGACTGATTCCCAAGTCAATCAAAAACCATACACAATTGGTTTCTTTGTCAATGTCTGGTAACAAGTTGGAAGGTTCAATTCCGTCATTTAGTGGGGTCAAGAATGTTGTCAACATAGACCTTTCCCACAATGGTCTAACAGGTACTATCAACTTCAGCCACTGGAGAAACCTTACTAAGCTGTCTTCTCTAATTTTGAGCTCTAACAAGCTCGATGGGGATGTCCCAGCGTCTTTGTTTTCTCTTCCCCTATTGTATCATCTAGATCTTTCTCTCTCTTCTTTTGTCCACATGTCAGTTTACGATTCGATAAAATTTAGTATATTATTTACAAATAAAGCAACATTGTTAAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

172

Amino Acids

18.8

Weight (kDa)

9.25

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AclWI	GGATC	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	28, 80, 473
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	55, 304
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	157, 237
AluBI	AGCT	3 cut(s)	340, 360, 370
AluI	AGCT	3 cut(s)	340, 360, 370
Alw21I	GWGCWC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	321
ApoI	RAATTY	3 cut(s)	28, 80, 473
BanII	GRGCYC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	2 cut(s)	7, 368
BfaI	CTAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	43, 64, 424
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	43, 64, 424
BssT1I	CCWWGG	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	408, 442
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	3 cut(s)	46, 67, 427
BstMBI	GATC	3 cut(s)	43, 64, 424
BstNSI	RCATGY	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	43, 424
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	2 cut(s)	43, 424
Bsu15I	ATCGAT	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	54, 303
CviAII	CATG	1 cut(s)	451
CviJI	RGCY	4 cut(s)	318, 340, 360, 370
CviKI_1	RGCY	4 cut(s)	318, 340, 360, 370
CviQI	GTAC	2 cut(s)	54, 303
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	45, 66, 426
DpnII	GATC	3 cut(s)	43, 64, 424
Eam1104I	CTCTTC	2 cut(s)	408, 442
EarI	CTCTTC	2 cut(s)	408, 442
Ecl136II	GAGCTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	454
FaiI	YATR	6 cut(s)	134, 138, 189, 275, 452, 482
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	450
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	166, 464
Hpy166II	GTNNAC	4 cut(s)	129, 271, 448, 460
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	49, 259, 422
Hpy8I	GTNNAC	4 cut(s)	129, 271, 448, 460
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	43, 64, 424
LpnPI	CCDG	7 cut(s)	38, 70, 72, 201, 285, 307, 399
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	45, 66, 426
MboI	GATC	3 cut(s)	43, 64, 424
MboII	GAAGA	3 cut(s)	336, 395, 429
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	43, 424
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	7 cut(s)	28, 80, 151, 194, 237, 351, 473
MmeI	TCCRAC	1 cut(s)	207
MseI	TTAA	1 cut(s)	509
MunI	CAATTG	1 cut(s)	194
NdeII	GATC	3 cut(s)	43, 64, 424
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	1 cut(s)	454
PciI	ACATGT	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	166, 464
PflMI	CCANNNNNTGG	1 cut(s)	40
PscI	ACATGT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	43, 424
RsaI	GTAC	2 cut(s)	55, 304
RsaNI	GTAC	2 cut(s)	54, 303
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	509
Sau3AI	GATC	3 cut(s)	43, 64, 424
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	9 cut(s)	59, 74, 235, 282, 304, 333, 342, 362, 372
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	7 cut(s)	28, 80, 151, 194, 237, 351, 473
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	3 cut(s)	63, 372, 467
TasI	AATT	7 cut(s)	28, 80, 151, 194, 237, 351, 473
TfiI	GAWTC	2 cut(s)	166, 464
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	40
XapI	RAATTY	3 cut(s)	28, 80, 473
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.