FvH4_7g16310

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007144
Physical Location & Seq
Reverse (-)
13997687 .. 14003414
5728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16310.t1

Sequence Viewer

Length: 1347 bp
ATGGCGTGTAGACGTGCTGTCTCTACCACGGCGACCCTTGCCACGAGACGCTTCCACCCTTCATTGGGTCATGTTCACGTTCTTCATGATGACAATGAGGATACTAAATCTCATTCACCGAGTTCAAGCACTCGACCCAACATAAAGAGTATTTTGCCTAGTGGATCTTACAGCTCGATAGTTGGATTTAGTTTTGGTTCCCATAGTAGACGGAGGACAGGCTCATCATTGGCTTGGAAAATGGGCCTTAGTTCCTTTAATTTTAGGCATATGTCAACGTCAATCGGCGATGGCTCTGATAAAATGGATGACATTGGATTTGTTGGGGAGGTTATTACAGATAAGATTGGTGATGGATCTGATAAGATGGATGCCATTGGATATGTTGCAGAGGTTATAACAGATAAGACGGTGGAGGTAGTAACCTCCCATGGAGCTGAAGTGGCTGTAGCAGCAGCAGATTCTTTCTTCCCTGTTGCTGGCCTACAATATGCGATCTATTACATTCATAGTTTTACCGGATTGAATTGGTGGGCAGCAATAGCTTTAACAACTGTTTTAATTCGAGTGGCTACAATTCCTCTTCTTATTGGTCAACTCAGGGCTACTGCAAAGCTCAATCTGATGAGGCCTCGATTAGAGCAGTTAAAACAGGAGATGCAAAATATGGAACAAGATCCTGAGGTTTTAAGAGAAGGTCAGAAACGAATGATGGCATTGTTCAATGAGTACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATACAAGGTCCTATCTTCATCAGCTTCTTCCTAGCTATTAGAAACATGGCTGAGAAAGTTCCATCTTTTCAAAATGGTGGAGCTCTCTGGTTTACGGATCTCACAACTCCAGATAGCTTGGTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATAACAGTCGAGTGCAACATGCAGGAAGGTATGGAAGGAAATCCTGTTGCCCAAACTATGAAAACCTATTCTAGAATACTAGCTGTCATTGCAATTCCAGTTATGATGAGCTTCCCAAAGGCACTGTTCTGTTATTGGCTCACCTCCAACATCTTCTCCCTTACATATGGATTGGCAATTAGGAGTCCAAAGGTGAAAAGTTTACTCAATCTTCCTCAATTTTCTGAGCCACCTCCTACTGCATCGCAGCCTCCATTTTCTTTGTTTGAAGCAGTTACAAAAGACACTACCATTGAATCCGAACCTTCATTACACACAGAGAAATCAGAGGTTTCTGACAGAAGCATATCGTCGTCTTCCATTCTCAAGCAGAGACTCAAAAGTCTGGAAAAGCATGTCAAGGGGAAAAAGAAAGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

449

Amino Acids

49.52

Weight (kDa)

8.77

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 177 - 368 2.5e-29 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AasI GACNNNNNNGTC 1 cut(s) 1305
AccI GTMKAC 2 cut(s) 10, 208
AclWI GGATC 5 cut(s) 172, 364, 671, 873, 886
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 3 cut(s) 64, 65, 479
AgsI TTSAA 7 cut(s) 126, 526, 724, 757, 839, 1193, 1220
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 3 cut(s) 25, 40, 1291
AlwI GGATC 5 cut(s) 172, 364, 671, 873, 886
AoxI GGCC 3 cut(s) 244, 481, 629
ApeKI GCWGC 4 cut(s) 452, 455, 536, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspS9I GGNCC 2 cut(s) 244, 776
AsuHPI GGTGA 5 cut(s) 108, 362, 901, 1057, 1129
AvaII GGWCC 1 cut(s) 776
AxyI CCTNAGG 1 cut(s) 681
BanII GRGCYC 1 cut(s) 853
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 1272
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 4 cut(s) 464, 467, 548, 1183
BccI CCATC 5 cut(s) 284, 347, 361, 706, 838
BceAI ACGGC 1 cut(s) 45
BciVI GTATCC 1 cut(s) 94
BcoDI GTCTC 3 cut(s) 25, 40, 1291
BfaI CTAG 4 cut(s) 159, 800, 996, 1004
BfmI CTRYAG 1 cut(s) 447
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 4 cut(s) 453, 456, 537, 1172
BlsI GCNGC 4 cut(s) 454, 457, 538, 1173
Bme18I GGWCC 1 cut(s) 776
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 244, 776
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 3 cut(s) 361, 648, 1175
BpiI GAAGAC 1 cut(s) 1272
BpmI CTGGAG 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 1274
BsaJI CCNNGG 2 cut(s) 27, 430
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1064, 1094
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 65, 479
Bse1I ACTGG 1 cut(s) 1022
Bse21I CCTNAGG 1 cut(s) 681
Bse3DI GCAATG 2 cut(s) 918, 1011
BseDI CCNNGG 2 cut(s) 27, 430
BseGI GGATG 2 cut(s) 313, 376
BseLI CCNNNNNNNGG 3 cut(s) 64, 65, 479
BseMI GCAATG 2 cut(s) 918, 1011
BseMII CTCAG 4 cut(s) 613, 672, 810, 1140
BseNI ACTGG 1 cut(s) 1022
BseXI GCAGC 4 cut(s) 464, 467, 548, 1183
BshFI GGCC 3 cut(s) 246, 483, 631
BsiHKAI GWGCWC 1 cut(s) 853
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 3 cut(s) 64, 65, 479
BsmAI GTCTC 3 cut(s) 25, 40, 1291
BsmBI CGTCTC 1 cut(s) 40
BsnI GGCC 3 cut(s) 246, 483, 631
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 6 cut(s) 164, 356, 495, 676, 865, 891
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 3 cut(s) 246, 483, 631
BspCNI CTCAG 4 cut(s) 612, 673, 811, 1141
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 5 cut(s) 172, 364, 671, 873, 886
BsrDI GCAATG 2 cut(s) 918, 1011
BsrI ACTGG 1 cut(s) 1022
BssECI CCNNGG 2 cut(s) 27, 430
BssMI GATC 6 cut(s) 164, 356, 495, 676, 865, 891
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 412, 556, 931, 1050
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 5 cut(s) 248, 599, 681, 819, 1149
BstDSI CCRYGG 2 cut(s) 27, 430
BstF5I GGATG 2 cut(s) 313, 376
BstKTI GATC 6 cut(s) 167, 359, 498, 679, 868, 894
BstMAI GTCTC 3 cut(s) 25, 40, 1291
BstMBI GATC 6 cut(s) 164, 356, 495, 676, 865, 891
BstMWI GCNNNNNNNGC 5 cut(s) 38, 443, 452, 542, 1013
BstNSI RCATGY 2 cut(s) 946, 1322
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 464, 467, 548, 1183
BstV2I GAAGAC 1 cut(s) 1272
BstX2I RGATCY 4 cut(s) 164, 356, 676, 865
BstYI RGATCY 4 cut(s) 164, 356, 676, 865
Bsu36I CCTNAGG 1 cut(s) 681
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 246, 483, 631
BtgI CCRYGG 2 cut(s) 27, 430
BtgZI GCGATG 2 cut(s) 303, 1152
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 313, 376
BtsIMutI CAGTG 1 cut(s) 1046
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 244, 776
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 730
CviAII CATG 6 cut(s) 71, 86, 431, 814, 943, 1319
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 5 cut(s) 248, 599, 681, 819, 1149
DpnI GATC 6 cut(s) 166, 358, 497, 678, 867, 893
DpnII GATC 6 cut(s) 164, 356, 495, 676, 865, 891
DrdI GACNNNNNNGTC 1 cut(s) 1305
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 1305
Eam1104I CTCTTC 1 cut(s) 588
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 588
Ecl136II GAGCTC 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 430
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 6 cut(s) 74, 89, 434, 817, 946, 1322
FatI CATG 6 cut(s) 70, 85, 430, 813, 942, 1318
FauNDI CATATG 2 cut(s) 270, 1090
FblI GTMKAC 2 cut(s) 10, 208
Fnu4HI GCNGC 4 cut(s) 453, 456, 537, 1172
FokI GGATG 2 cut(s) 320, 383
FriOI GRGCYC 1 cut(s) 853
Fsp4HI GCNGC 4 cut(s) 453, 456, 537, 1172
FspBI CTAG 4 cut(s) 159, 800, 996, 1004
GluI GCNGC 4 cut(s) 453, 456, 537, 1172
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 3 cut(s) 246, 483, 631
HapII CCGG 1 cut(s) 519
HgaI GACGC 1 cut(s) 57
Hin1II CATG 6 cut(s) 74, 89, 434, 817, 946, 1322
HincII GTYRAC 2 cut(s) 276, 596
HindII GTYRAC 2 cut(s) 276, 596
HinfI GANTC 5 cut(s) 461, 735, 1108, 1220, 1299
HpaII CCGG 1 cut(s) 519
HphI GGTGA 5 cut(s) 108, 362, 901, 1057, 1129
Hpy166II GTNNAC 7 cut(s) 11, 76, 209, 276, 596, 861, 1127
Hpy188I TCNGA 9 cut(s) 298, 361, 624, 702, 906, 1150, 1225, 1252, 1261
Hpy188III TCNNGA 6 cut(s) 86, 680, 878, 922, 996, 1310
Hpy8I GTNNAC 7 cut(s) 11, 76, 209, 276, 596, 861, 1127
Hpy99I CGWCG 1 cut(s) 1279
HpyAV CCTTC 6 cut(s) 69, 689, 905, 944, 953, 1239
HpyCH4III ACNGT 4 cut(s) 412, 556, 931, 1050
HpyCH4IV ACGT 3 cut(s) 13, 78, 278
HpyCH4V TGCA 7 cut(s) 389, 611, 661, 939, 946, 1016, 1166
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 443, 452, 542, 1013
HpyF3I CTNAG 5 cut(s) 248, 599, 681, 819, 1149
HpySE526I ACGT 3 cut(s) 13, 78, 278
Hsp92II CATG 6 cut(s) 74, 89, 434, 817, 946, 1322
Kzo9I GATC 6 cut(s) 164, 356, 495, 676, 865, 891
LmnI GCTCC 2 cut(s) 434, 848
Lsp1109I GCAGC 4 cut(s) 464, 467, 548, 1183
LweI GCATC 3 cut(s) 361, 648, 1175
MaeI CTAG 4 cut(s) 159, 800, 996, 1004
MaeII ACGT 3 cut(s) 13, 78, 278
MaeIII GTNAC 3 cut(s) 421, 736, 1198
MalI GATC 6 cut(s) 166, 358, 497, 678, 867, 893
MboI GATC 6 cut(s) 164, 356, 495, 676, 865, 891
MboII GAAGA 8 cut(s) 74, 460, 575, 775, 787, 1069, 1127, 1272
MfeI CAATTG 1 cut(s) 752
MflI RGATCY 4 cut(s) 164, 356, 676, 865
MhlI GDGCHC 1 cut(s) 853
MlyI GAGTC 3 cut(s) 744, 1117, 1293
MmeI TCCRAC 2 cut(s) 163, 1095
MseI TTAA 5 cut(s) 258, 548, 560, 647, 689
MspI CCGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 752
MwoI GCNNNNNNNGC 5 cut(s) 38, 443, 452, 542, 1013
NcoI CCATGG 1 cut(s) 430
NdeI CATATG 2 cut(s) 270, 1090
NdeII GATC 6 cut(s) 164, 356, 495, 676, 865, 891
NlaIII CATG 6 cut(s) 74, 89, 434, 817, 946, 1322
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 2 cut(s) 946, 1322
PagI TCATGA 1 cut(s) 85
PceI AGGCCT 1 cut(s) 631
PfeI GAWTC 2 cut(s) 461, 1220
PkrI GCNGC 4 cut(s) 454, 457, 538, 1173
PleI GAGTC 3 cut(s) 743, 1116, 1293
PpsI GAGTC 3 cut(s) 743, 1116, 1293
PpuMI RGGWCCY 1 cut(s) 776
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 853
Psp5II RGGWCCY 1 cut(s) 776
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 244, 776
PspPPI RGGWCCY 1 cut(s) 776
PsrI GAACNNNNNNTAC 2 cut(s) 1218, 1250
PsuI RGATCY 4 cut(s) 164, 356, 676, 865
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
SacI GAGCTC 1 cut(s) 853
SaqAI TTAA 5 cut(s) 258, 548, 560, 647, 689
SatI GCNGC 4 cut(s) 453, 456, 537, 1172
Sau3AI GATC 6 cut(s) 164, 356, 495, 676, 865, 891
Sau96I GGNCC 2 cut(s) 244, 776
SchI GAGTC 3 cut(s) 744, 1117, 1293
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 3 cut(s) 361, 648, 1175
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
SseBI AGGCCT 1 cut(s) 631
SspMI CTAG 4 cut(s) 159, 800, 996, 1004
SstI GAGCTC 1 cut(s) 853
StuI AGGCCT 1 cut(s) 631
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 412, 556, 931, 1050
TaiI ACGT 3 cut(s) 16, 81, 281
TaqI TCGA 5 cut(s) 133, 176, 565, 634, 933
TfiI GAWTC 2 cut(s) 461, 1220
Tru1I TTAA 5 cut(s) 258, 548, 560, 647, 689
Tru9I TTAA 5 cut(s) 258, 548, 560, 647, 689
TscAI CASTG 1 cut(s) 1053
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 4 cut(s) 452, 455, 536, 1171
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 7 cut(s) 51, 74, 497, 757, 775, 998, 1221
TspGWI ACGGA 3 cut(s) 226, 747, 878
TspRI CASTG 1 cut(s) 1053
VpaK11BI GGWCC 1 cut(s) 776
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 2 cut(s) 946, 1322
XmiI GTMKAC 2 cut(s) 10, 208
XspI CTAG 4 cut(s) 159, 800, 996, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.