Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

16810469 .. 16813202

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14750.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGACTTGGCTCCTTTTCTTGTCGGTATATGTCTACTGTAATTGGTGATGGGTCTGATAAGATTAATGACACTGGCTATTTTGCTGAGGTTATTGCGGATAAAACATTGGAAGTAGTAACCTCCCAAGCCCCTGCTGTGAGTGAAGTGGCTGTTGCAGCAGCGGATTCTTTCCCCCCAGTTGCTGCCCTGCAGTACTTGATCGATGGTGTCCATTCTTTTACCGGATTGAATTGGTGGGCATCAATAGCTTTAACAACTATTCTGATTCGAGGGGCTACAGTTCCACTTCTTATAGATCAACTCAGGGCCACTACACAACTTAATTTAATGAGGCCGCGCTTAGAGGAGTTAAGACAACAGATGCAAAATATGGCAACAGATCCAAATGTTATGCAAGAGGGTCAGAGACGAATGAAGGCATTGTTCAACGAATATGGAGTCACTCCGTTTTCTCAATTGAAAGGACTGTTCATTCAAGGTCCCATCTTCGTCTGTTTTTTCTTAGCTATTAGAAACATGGCCGAGAAGGTTCCTTCTTTTGAAAGTGGTGGGGCTCTTTGGTTTACTAATCTCGCTACCCCCGATAGTCTTCTCATCCTTCCAGTTCTAACATCATTGACATTTCTGATTACAGTAGAGGAGGGTCTGGAAGGGAATCCTATTGCCCAAACTATGAAAAACTATTCTAGAATCCTTGCTGCCATTTCAATTCCTGTAATGATGAGTTTCCCTAAGGCGCTGTTCTGTTATTGGCTGACCTCCAACATGTTCTCCCTTGCATACGGATTAGTAATTAGGCGCCCAGAGGTGAAGAGTTACCTTCGCCTTCCAGTAATTCCCATGCCACCTCCTACTGCATCCAAGCCTCATTCCTTTATGTCTTCGGCAATTGAACAAGATACTACCGTTGAATCAGAACCTTCGTTATGCTCAGAGCAAACAAAGGCTGCAGACACAAGAATATCACGGACTTCAATTCTCAAGCAGAGACTTAGAATTCTGGAAAAGAAAATCAAGGAAAAAAAGAAGCAAAACAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

349

Amino Acids

38.64

Weight (kDa)

8.95

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	801
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	340
AciI	CCGC	3 cut(s)	98, 164, 338
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	999
AcyI	GRCGYC	1 cut(s)	802
AfaI	GTAC	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	9 cut(s)	232, 430, 463, 479, 545, 711, 896, 914, 978
AluBI	AGCT	2 cut(s)	251, 509
AluI	AGCT	2 cut(s)	251, 509
Alw26I	GTCTC	2 cut(s)	403, 985
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	309, 335, 522
ApeKI	GCWGC	5 cut(s)	158, 161, 185, 701, 950
ApoI	RAATTY	1 cut(s)	999
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	3 cut(s)	342, 742, 804
AspS9I	GGNCC	2 cut(s)	309, 482
AsuHPI	GGTGA	2 cut(s)	59, 823
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	735
BaeI	ACNNNNGTAYC	2 cut(s)	894, 927
BanI	GGYRCC	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	2 cut(s)	584, 876
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	170, 172, 173, 688, 937
BccI	CCATC	3 cut(s)	44, 200, 494
BcoDI	GTCTC	2 cut(s)	403, 985
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	3 cut(s)	191, 279, 951
BfoI	RGCGCY	2 cut(s)	743, 805
BisI	GCNGC	6 cut(s)	159, 162, 186, 338, 702, 951
BlsI	GCNGC	6 cut(s)	160, 163, 187, 339, 703, 952
BmcAI	AGTACT	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	309, 482
BmiI	GGNNCC	4 cut(s)	13, 484, 534, 803
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	251, 354, 869
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	584, 876
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	968
Bsa29I	ATCGAT	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	802
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bse1I	ACTGG	4 cut(s)	79, 179, 605, 833
Bse21I	CCTNAGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	204
BseGI	GGATG	2 cut(s)	597, 860
BseMII	CTCAG	3 cut(s)	78, 319, 948
BseNI	ACTGG	4 cut(s)	79, 179, 605, 833
BseRI	GAGGAG	2 cut(s)	362, 656
BseXI	GCAGC	5 cut(s)	170, 172, 173, 688, 937
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	311, 337, 524
BshNI	GGYRCC	1 cut(s)	801
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	18, 468
BsmAI	GTCTC	2 cut(s)	403, 985
BsmBI	CGTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	18, 468
BsnI	GGCC	3 cut(s)	311, 337, 524
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	201, 298, 382
BspACI	CCGC	3 cut(s)	98, 164, 338
BspANI	GGCC	3 cut(s)	311, 337, 524
BspCNI	CTCAG	3 cut(s)	79, 318, 947
BspDI	ATCGAT	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	4 cut(s)	13, 484, 534, 803
BspMAI	CTGCAG	2 cut(s)	195, 955
BspPI	GGATC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	801
BsrI	ACTGG	4 cut(s)	79, 179, 605, 833
BssMI	GATC	3 cut(s)	201, 298, 382
BssNI	GRCGYC	1 cut(s)	802
Bst4CI	ACNGT	5 cut(s)	40, 283, 471, 637, 910
Bst6I	CTCTTC	1 cut(s)	809
BstACI	GRCGYC	1 cut(s)	802
BstDEI	CTNAG	7 cut(s)	87, 305, 343, 505, 735, 934, 995
BstF5I	GGATG	2 cut(s)	597, 860
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	2 cut(s)	743, 805
BstHHI	GCGC	3 cut(s)	342, 742, 804
BstKTI	GATC	3 cut(s)	204, 301, 385
BstMAI	GTCTC	2 cut(s)	403, 985
BstMBI	GATC	3 cut(s)	201, 298, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 248
BstNSI	RCATGY	1 cut(s)	772
BstSFI	CTRYAG	3 cut(s)	191, 279, 951
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	5 cut(s)	170, 172, 173, 688, 937
BstV2I	GAAGAC	2 cut(s)	584, 876
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	3 cut(s)	311, 337, 524
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	597, 860
BtsIMutI	CAGTG	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	3 cut(s)	342, 742, 804
Cfr13I	GGNCC	2 cut(s)	309, 482
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	520, 769, 844
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	7 cut(s)	87, 305, 343, 505, 735, 934, 995
DinI	GGCGCC	1 cut(s)	803
DpnI	GATC	3 cut(s)	203, 300, 384
DpnII	GATC	3 cut(s)	201, 298, 382
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	999
EcoT38I	GRGCYC	1 cut(s)	559
EgeI	GGCGCC	1 cut(s)	803
EheI	GGCGCC	1 cut(s)	803
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	3 cut(s)	523, 772, 847
FaqI	GGGAC	2 cut(s)	18, 468
FatI	CATG	3 cut(s)	519, 768, 843
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	6 cut(s)	159, 162, 186, 338, 702, 951
FokI	GGATG	2 cut(s)	584, 847
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	6 cut(s)	159, 162, 186, 338, 702, 951
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	3 cut(s)	341, 741, 803
GluI	GCNGC	6 cut(s)	159, 162, 186, 338, 702, 951
HaeII	RGCGCY	2 cut(s)	743, 805
HaeIII	GGCC	3 cut(s)	311, 337, 524
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	3 cut(s)	342, 742, 804
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	3 cut(s)	523, 772, 847
Hin6I	GCGC	3 cut(s)	340, 740, 802
HinP1I	GCGC	3 cut(s)	340, 740, 802
HinfI	GANTC	6 cut(s)	167, 268, 441, 658, 693, 914
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	59, 823
Hpy166II	GTNNAC	2 cut(s)	36, 567
Hpy188I	TCNGA	6 cut(s)	58, 267, 408, 630, 919, 937
Hpy188III	TCNNGA	3 cut(s)	650, 690, 1004
Hpy8I	GTNNAC	2 cut(s)	36, 567
HpyAV	CCTTC	8 cut(s)	412, 523, 546, 611, 647, 833, 839, 933
HpyCH4III	ACNGT	5 cut(s)	40, 283, 471, 637, 910
HpyCH4V	TGCA	7 cut(s)	158, 193, 367, 397, 782, 860, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 248
HpyF3I	CTNAG	7 cut(s)	87, 305, 343, 505, 735, 934, 995
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	3 cut(s)	523, 772, 847
HspAI	GCGC	3 cut(s)	340, 740, 802
KasI	GGCGCC	1 cut(s)	801
Kzo9I	GATC	3 cut(s)	201, 298, 382
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	5 cut(s)	170, 172, 173, 688, 937
LweI	GCATC	3 cut(s)	251, 354, 869
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	118, 442, 818
MalI	GATC	3 cut(s)	203, 300, 384
MboI	GATC	3 cut(s)	201, 298, 382
MboII	GAAGA	4 cut(s)	481, 584, 826, 876
MfeI	CAATTG	2 cut(s)	458, 891
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	559
Mly113I	GGCGCC	1 cut(s)	802
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	789
MseI	TTAA	5 cut(s)	66, 254, 324, 329, 353
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	225
MunI	CAATTG	2 cut(s)	458, 891
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	158, 248
NarI	GGCGCC	1 cut(s)	802
NdeII	GATC	3 cut(s)	201, 298, 382
NlaIII	CATG	3 cut(s)	523, 772, 847
NlaIV	GGNNCC	4 cut(s)	13, 484, 534, 803
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	772
PciI	ACATGT	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfeI	GAWTC	5 cut(s)	167, 268, 658, 693, 914
PkrI	GCNGC	6 cut(s)	160, 163, 187, 339, 703, 952
PleI	GAGTC	1 cut(s)	449
PluTI	GGCGCC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	482
PscI	ACATGT	1 cut(s)	768
PshBI	ATTAAT	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	482
PspN4I	GGNNCC	4 cut(s)	13, 484, 534, 803
PspPI	GGNCC	2 cut(s)	309, 482
PspPPI	RGGWCCY	1 cut(s)	482
PstI	CTGCAG	2 cut(s)	195, 955
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	5 cut(s)	66, 254, 324, 329, 353
SatI	GCNGC	6 cut(s)	159, 162, 186, 338, 702, 951
Sau3AI	GATC	3 cut(s)	201, 298, 382
Sau96I	GGNCC	2 cut(s)	309, 482
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	251, 354, 869
SfcI	CTRYAG	3 cut(s)	191, 279, 951
SfoI	GGCGCC	1 cut(s)	803
SinI	GGWCC	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
SsiI	CCGC	3 cut(s)	98, 164, 338
SspDI	GGCGCC	1 cut(s)	801
SspMI	CTAG	1 cut(s)	690
TaaI	ACNGT	5 cut(s)	40, 283, 471, 637, 910
TaqI	TCGA	2 cut(s)	204, 271
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	5 cut(s)	167, 268, 658, 693, 914
Tru1I	TTAA	5 cut(s)	66, 254, 324, 329, 353
Tru9I	TTAA	5 cut(s)	66, 254, 324, 329, 353
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	5 cut(s)	158, 161, 185, 701, 950
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	431, 463, 692
TspGWI	ACGGA	3 cut(s)	438, 801, 985
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	999
XbaI	TCTAGA	1 cut(s)	689
XceI	RCATGY	1 cut(s)	772
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	690
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.