Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041710.1

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

1395 .. 2132

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041710.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaggcctcgtttagagcagttgaaacaagagatgcaaaatatggaagcagatcctgaggttttaagagaaggtcagaaacggatgatggcattgttccatgaatacggagtcactccattttctcaattgaaaggattattcattcaaggtcctattttcatcagcttctttcttgcttttagaaacaaggctgagaaagttccgtcttttcaaaatggtggagctctctggtttactgatctcacaactccagatagcatgctgatccttccaattctgacagcaatgacattctggatcacagttgagtgcaacatgcaggaaggtctggaaggaaatcctattgcccaaactatgaaaacctattctagaatcctagctgtcattgcaattccagttatgatgagcttccccaaggcactgttatgttattggctcacctccaacatcttctctcttacatatggattagcaattaggcgtccagaggtgaagagtttacttaatcttcctgaaattccagagcctcctccaactgcatcacaacctccattttctatgtttgaagcagttaaaaaagacactactattgaatccgaaccttcattaagcacagagacatcgaaggtttctgacagaagcatatcgtcgtcttcaattctcaagcaaagactcaaaagtctagagaagcatgtcaaggggaaaaagaaacaaattagtcaaagatctacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

245

Amino Acids

27.74

Weight (kDa)

9.3

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	681
AclWI	GGATC	3 cut(s)	47, 262, 308
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	484
AgsI	TTSAA	7 cut(s)	25, 133, 149, 215, 569, 596, 660
AluBI	AGCT	4 cut(s)	168, 227, 383, 411
AluI	AGCT	4 cut(s)	168, 227, 383, 411
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	47, 262, 308
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	433, 505
AvaII	GGWCC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	3 cut(s)	372, 380, 686
BglII	AGATCT	1 cut(s)	728
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmsI	GCATC	2 cut(s)	24, 551
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	398
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	294, 387
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	294, 387
BseMII	CTCAG	2 cut(s)	48, 186
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	52, 241, 267, 300, 728
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	49, 187
BspPI	GGATC	3 cut(s)	47, 262, 308
BsrDI	GCAATG	2 cut(s)	294, 387
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	52, 241, 267, 300, 728
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	307, 426
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	57, 195
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	5 cut(s)	55, 244, 270, 303, 731
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	5 cut(s)	52, 241, 267, 300, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	3 cut(s)	265, 322, 698
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	52, 728
BstYI	RGATCY	2 cut(s)	52, 728
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	473
CviAII	CATG	4 cut(s)	101, 262, 319, 695
CviJI	RGCY	8 cut(s)	7, 168, 194, 227, 383, 411, 439, 529
CviKI_1	RGCY	8 cut(s)	7, 168, 194, 227, 383, 411, 439, 529
DdeI	CTNAG	2 cut(s)	57, 195
DpnI	GATC	5 cut(s)	54, 243, 269, 302, 730
DpnII	GATC	5 cut(s)	52, 241, 267, 300, 728
DrdI	GACNNNNNNGTC	1 cut(s)	681
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	104, 265, 322, 698
FatI	CATG	4 cut(s)	100, 261, 318, 694
FauNDI	CATATG	1 cut(s)	466
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	3 cut(s)	372, 380, 686
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	7
HgaI	GACGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	4 cut(s)	104, 265, 322, 698
HinfI	GANTC	4 cut(s)	111, 375, 596, 675
HphI	GGTGA	2 cut(s)	433, 505
Hpy166II	GTNNAC	2 cut(s)	237, 503
Hpy188I	TCNGA	4 cut(s)	78, 282, 601, 637
Hpy188III	TCNNGA	9 cut(s)	56, 254, 298, 332, 372, 488, 515, 524, 686
Hpy8I	GTNNAC	2 cut(s)	237, 503
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	6 cut(s)	65, 281, 320, 329, 615, 622
HpyCH4III	ACNGT	2 cut(s)	307, 426
HpyCH4V	TGCA	5 cut(s)	37, 315, 322, 392, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	57, 195
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	4 cut(s)	104, 265, 322, 698
Kzo9I	GATC	5 cut(s)	52, 241, 267, 300, 728
LmnI	GCTCC	1 cut(s)	224
LweI	GCATC	2 cut(s)	24, 551
MaeI	CTAG	3 cut(s)	372, 380, 686
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	5 cut(s)	54, 243, 269, 302, 730
MboI	GATC	5 cut(s)	52, 241, 267, 300, 728
MboII	GAAGA	4 cut(s)	445, 503, 508, 648
MfeI	CAATTG	1 cut(s)	128
MflI	RGATCY	2 cut(s)	52, 728
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	7 cut(s)	128, 276, 393, 477, 519, 660, 717
MlyI	GAGTC	2 cut(s)	120, 669
MmeI	TCCRAC	2 cut(s)	471, 560
MnlI	CCTC	7 cut(s)	18, 52, 454, 484, 540, 543, 561
MseI	TTAA	4 cut(s)	65, 507, 576, 611
MslI	CAYNNNNRTG	1 cut(s)	427
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	5 cut(s)	52, 241, 267, 300, 728
NlaIII	CATG	4 cut(s)	104, 265, 322, 698
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	3 cut(s)	265, 322, 698
PaeI	GCATGC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	375, 596
PleI	GAGTC	2 cut(s)	119, 669
PpsI	GAGTC	2 cut(s)	119, 669
PpuMI	RGGWCCY	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	52, 728
RseI	CAYNNNNRTG	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	4 cut(s)	65, 507, 576, 611
Sau3AI	GATC	5 cut(s)	52, 241, 267, 300, 728
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	120, 669
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	24, 551
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	7 cut(s)	128, 276, 393, 477, 519, 660, 717
SseBI	AGGCCT	1 cut(s)	7
SspMI	CTAG	3 cut(s)	372, 380, 686
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	307, 426
TaqI	TCGA	1 cut(s)	626
TasI	AATT	7 cut(s)	128, 276, 393, 477, 519, 660, 717
TfiI	GAWTC	2 cut(s)	375, 596
Tru1I	TTAA	4 cut(s)	65, 507, 576, 611
Tru9I	TTAA	4 cut(s)	65, 507, 576, 611
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	117, 133, 151, 374, 597
TspGWI	ACGGA	3 cut(s)	97, 123, 195
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	519
XbaI	TCTAGA	2 cut(s)	371, 685
XceI	RCATGY	3 cut(s)	265, 322, 698
XspI	CTAG	3 cut(s)	372, 380, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.