RchiOBHm_Chr1g0378431

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007144
Physical Location & Seq
Reverse (-)
64939268 .. 64940326
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60185

Sequence Viewer

Length: 987 bp
ATGTCAACCACGATTGGTGATAAGACTGTGGAAGTAGTTACCTCCCAAGGACCGGCTGTGAGTGAAGTGGCTGTTGCTGCAGCAGATTCTTTCTTGCCAGTTGCTGGCCTACAATACTTGATCGATTTCGTTCATTCTCTTACCGGATTGAATTGGTGGGCATCAATAGCTTTAACAACTATTTTTATTCGATTGGCTACAATTCCTCTTCTTATTGATCAACTCAGGGCTACTACAAAACTCAATTTGATGAGGCCTCGTTTAGAGCAGTTGAAACAAGAGATGCAAAATATGGAAGCAGATCCTGAGGTTTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGAATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTTTTAGAAACAAGGCTGAGAAAGTTCCGTCTTTTCAAAATGGTGGAGCTCCCTGGTTTACTGATCTCACAACTCCAGATAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTTGAGCGCAACATGCAGGAAGGTCTGGAAGGAAATCCTGTTGCCCAAACTATGAAAACCTATTCTAGAATCCTCGCTGTCATTGCAATTCCAGTTATGATGAGCTTCCCCAAGGCACTGTTCTGTTATTGGCTCACCTCCCACATCTTCTCTCTTACATATGGATTAGCAATTAGGCGTCCAGAGGTGCAGAGTTTACTTAATCTTCCTGAAATTCCTGAGCCTCCTCCTACTGCATCACAGCCTCCATTTTCTATATTTGAAGCAGTTAAAAAAGACACTACTATTGAATCCGAACCTTCATTAAGCACAGAGACATCGAAGGTTTCTGACAGAAGCATATCGTCGTCTTCAATTCTCAAGCAAAGACTCAAAAGTCTAGAGAAGCATGTCAAGGGGAAAAAGAAACAAATTAGTCAAAGATCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

328

Amino Acids

36.65

Weight (kDa)

9.06

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 52 - 244 1.7e-28 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 930
AccB7I CCANNNNNTGG 1 cut(s) 104
AclWI GGATC 3 cut(s) 296, 511, 557
AcsI RAATTY 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 733
AfiI CCNNNNNNNGG 2 cut(s) 52, 104
AgsI TTSAA 8 cut(s) 151, 274, 382, 398, 464, 818, 845, 909
AjnI CCWGG 1 cut(s) 479
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
AluBI AGCT 4 cut(s) 170, 417, 476, 660
AluI AGCT 4 cut(s) 170, 417, 476, 660
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 863
AlwI GGATC 3 cut(s) 296, 511, 557
AlwNI CAGNNNCTG 2 cut(s) 104, 305
AoxI GGCC 2 cut(s) 106, 254
ApeKI GCWGC 2 cut(s) 77, 80
ApoI RAATTY 1 cut(s) 768
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 50, 401
AsuHPI GGTGA 2 cut(s) 29, 682
AvaII GGWCC 2 cut(s) 50, 401
AxyI CCTNAGG 1 cut(s) 306
BanII GRGCYC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 2 cut(s) 64, 92
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 481
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 2 cut(s) 621, 935
BfmI CTRYAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 977
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 2 cut(s) 50, 401
BmgT120I GGNCC 2 cut(s) 50, 401
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 170, 273, 800
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 899
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 46, 479, 666
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 104
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 98, 647
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 543, 636
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 46, 479, 666
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 52, 104
BseMI GCAATG 2 cut(s) 543, 636
BseMII CTCAG 4 cut(s) 238, 297, 435, 765
BseNI ACTGG 2 cut(s) 98, 647
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 2 cut(s) 64, 92
BsgI GTGCAG 1 cut(s) 764
BshFI GGCC 2 cut(s) 108, 256
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 2 cut(s) 53, 144
BslI CCNNNNNNNGG 2 cut(s) 52, 104
BsmAI GTCTC 1 cut(s) 863
BsnI GGCC 2 cut(s) 108, 256
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
BspANI GGCC 2 cut(s) 108, 256
BspCNI CTCAG 4 cut(s) 237, 298, 436, 766
BspDI ATCGAT 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 3 cut(s) 296, 511, 557
BsrDI GCAATG 2 cut(s) 543, 636
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 2 cut(s) 98, 647
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 46, 479, 666
BssMI GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 2 cut(s) 46, 666
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 28, 556, 675
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 733
BstC8I GCNNGC 2 cut(s) 106, 512
BstDEI CTNAG 4 cut(s) 224, 306, 444, 774
BstF5I GGATG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 7 cut(s) 123, 220, 304, 493, 519, 552, 980
BstMAI GTCTC 1 cut(s) 863
BstMBI GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
BstMWI GCNNNNNNNGC 4 cut(s) 77, 167, 568, 638
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 3 cut(s) 514, 571, 947
BstSCI CCNGG 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 64, 92
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 301, 977
BstYI RGATCY 2 cut(s) 301, 977
Bsu15I ATCGAT 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 2 cut(s) 108, 256
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 671
Cac8I GCNNGC 2 cut(s) 106, 512
CaiI CAGNNNCTG 2 cut(s) 104, 305
CfoI GCGC 1 cut(s) 564
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 50, 401
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 722
CviAII CATG 4 cut(s) 350, 511, 568, 944
DdeI CTNAG 4 cut(s) 224, 306, 444, 774
DpnI GATC 7 cut(s) 122, 219, 303, 492, 518, 551, 979
DpnII GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
DrdI GACNNNNNNGTC 1 cut(s) 930
DseDI GACNNNNNNGTC 1 cut(s) 930
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 46, 666
Eco147I AGGCCT 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 478
Eco47I GGWCC 2 cut(s) 50, 401
Eco53kI GAGCTC 1 cut(s) 476
Eco81I CCTNAGG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 46, 666
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 2 cut(s) 46, 666
FaeI CATG 4 cut(s) 353, 514, 571, 947
FatI CATG 4 cut(s) 349, 510, 567, 943
FauNDI CATATG 1 cut(s) 715
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 78, 81
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 2 cut(s) 621, 935
GlaI GCGC 1 cut(s) 563
GluI GCNGC 2 cut(s) 78, 81
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 2 cut(s) 108, 256
HapII CCGG 2 cut(s) 53, 144
HgaI GACGC 1 cut(s) 722
HhaI GCGC 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 4 cut(s) 353, 514, 571, 947
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 86, 360, 624, 845, 924
HpaII CCGG 2 cut(s) 53, 144
HphI GGTGA 2 cut(s) 29, 682
Hpy166II GTNNAC 3 cut(s) 6, 486, 752
Hpy188I TCNGA 4 cut(s) 327, 531, 850, 886
Hpy188III TCNNGA 9 cut(s) 305, 503, 547, 581, 621, 737, 764, 773, 935
Hpy8I GTNNAC 3 cut(s) 6, 486, 752
Hpy99I CGWCG 1 cut(s) 904
HpyAV CCTTC 6 cut(s) 314, 530, 569, 578, 864, 871
HpyCH4III ACNGT 3 cut(s) 28, 556, 675
HpyCH4V TGCA 6 cut(s) 80, 286, 571, 641, 745, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 167, 568, 638
HpyF3I CTNAG 4 cut(s) 224, 306, 444, 774
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 4 cut(s) 353, 514, 571, 947
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
LmnI GCTCC 2 cut(s) 473, 481
Lsp1109I GCAGC 2 cut(s) 64, 92
LweI GCATC 3 cut(s) 170, 273, 800
MaeI CTAG 2 cut(s) 621, 935
MaeIII GTNAC 2 cut(s) 37, 361
MalI GATC 7 cut(s) 122, 219, 303, 492, 518, 551, 979
MboI GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
MboII GAAGA 4 cut(s) 200, 694, 752, 897
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 2 cut(s) 301, 977
MhlI GDGCHC 1 cut(s) 478
MlyI GAGTC 2 cut(s) 369, 918
MseI TTAA 5 cut(s) 173, 314, 756, 825, 860
MspI CCGG 2 cut(s) 53, 144
MspR9I CCNGG 1 cut(s) 481
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 4 cut(s) 77, 167, 568, 638
NdeI CATATG 1 cut(s) 715
NdeII GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
NlaIII CATG 4 cut(s) 353, 514, 571, 947
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 3 cut(s) 514, 571, 947
PaeI GCATGC 1 cut(s) 514
PceI AGGCCT 1 cut(s) 256
PfeI GAWTC 3 cut(s) 86, 624, 845
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 2 cut(s) 79, 82
PleI GAGTC 2 cut(s) 368, 918
PpsI GAGTC 2 cut(s) 368, 918
PpuMI RGGWCCY 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspPI GGNCC 2 cut(s) 50, 401
PspPPI RGGWCCY 1 cut(s) 401
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 2 cut(s) 104, 305
PsuI RGATCY 2 cut(s) 301, 977
SacI GAGCTC 1 cut(s) 478
SaqAI TTAA 5 cut(s) 173, 314, 756, 825, 860
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 7 cut(s) 120, 217, 301, 490, 516, 549, 977
Sau96I GGNCC 2 cut(s) 50, 401
SchI GAGTC 2 cut(s) 369, 918
ScrFI CCNGG 1 cut(s) 481
SduI GDGCHC 1 cut(s) 478
SfaNI GCATC 3 cut(s) 170, 273, 800
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 2 cut(s) 50, 401
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SphI GCATGC 1 cut(s) 514
SseBI AGGCCT 1 cut(s) 256
SspMI CTAG 2 cut(s) 621, 935
SstI GAGCTC 1 cut(s) 478
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 2 cut(s) 46, 666
TaaI ACNGT 3 cut(s) 28, 556, 675
TaqI TCGA 3 cut(s) 123, 190, 875
TfiI GAWTC 3 cut(s) 86, 624, 845
Tru1I TTAA 5 cut(s) 173, 314, 756, 825, 860
Tru9I TTAA 5 cut(s) 173, 314, 756, 825, 860
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 77, 80
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 6 cut(s) 122, 366, 382, 400, 623, 846
TspGWI ACGGA 3 cut(s) 346, 372, 444
TspRI CASTG 1 cut(s) 678
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 50, 401
XapI RAATTY 1 cut(s) 768
XbaI TCTAGA 2 cut(s) 620, 934
XceI RCATGY 3 cut(s) 514, 571, 947
XspI CTAG 2 cut(s) 621, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.