Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

38255206 .. 38256238

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCAAGTACCATTGGAGATGTGCTTCTATACACTGGATTCTTTTCGCTTTCGGGAACATGCATATCCACCTTGTGTGTCCTTGTCTTGCGATCCAATAAATTTTACGGGCGCATCAGATGTCACAAGACTAATGGCACTTCGCCAGTACTTCAAATCATAGATCTAGCTCACAACAATTTTAGTGGTGAAGTACCTGGAACAACTTTGACAACTTGGCAGGCCATGAGCACTAGCAAAGATAATGCCCCATGGAAGATCGGTAAACTTCAATATGAGTTGGATGGAGTTTATTATCAAGAAGATACTATCACGGTAACCAACAAAGGTTTAGAGATGGAGTTGGTGAATGTTTTAACTATCTTCACCTCCATTGACTTCTCGTGCAACAAGTTCAATGGATCAATACCCGAGGAAATTGGAGAACTCAAATCATTGTATGCCATCAACTTGTCCAACAATGCTTTCACAGGTGCAGTTCCATCATCATTAAGTAATTTGAGTCAGCTAGACTCTTTGGACCTCTCGAGTAACAAACTGAGCGGTCAAATCCCATCAGAGCTTACAAAACTCACTTTCCTTGCATTCTTGAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGCGGTGCTCAATTTCCAACATTTGATACAGCTTCATTCGGAGTTAATAAAGGAATTAATATGGGGGCCTTCTTTAACAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

237

Amino Acids

25.85

Weight (kDa)

5.68

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	135 - 199	5.5e-06	Leucine-rich repeat region
LRR_8	PF13855	145 - 204	3.2e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	543
AciI	CCGC	2 cut(s)	543, 630
AclWI	GGATC	2 cut(s)	87, 409
AcsI	RAATTY	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	10, 150, 195
AgsI	TTSAA	4 cut(s)	155, 272, 397, 592
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	4 cut(s)	170, 508, 562, 659
AluI	AGCT	4 cut(s)	170, 508, 562, 659
Alw21I	GWGCWC	2 cut(s)	233, 637
AlwI	GGATC	2 cut(s)	87, 409
Ama87I	CYCGRG	2 cut(s)	410, 526
AoxI	GGCC	2 cut(s)	222, 693
ApoI	RAATTY	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	520, 693
AsuHPI	GGTGA	3 cut(s)	200, 358, 358
AvaI	CYCGRG	2 cut(s)	410, 526
AvaII	GGWCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	233, 637
BccI	CCATC	5 cut(s)	278, 331, 452, 490, 562
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	615
BfaI	CTAG	3 cut(s)	167, 234, 509
BfuI	GTATCC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	2 cut(s)	410, 526
BmgT120I	GGNCC	2 cut(s)	520, 693
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	251, 411
Bse1I	ACTGG	2 cut(s)	40, 146
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	251, 411
BseGI	GGATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	2 cut(s)	40, 146
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	224, 695
BsiHKAI	GWGCWC	2 cut(s)	233, 637
BsiHKCI	CYCGRG	2 cut(s)	410, 526
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	224, 695
BsoBI	CYCGRG	2 cut(s)	410, 526
Bsp1286I	GDGCHC	2 cut(s)	233, 637
Bsp143I	GATC	4 cut(s)	92, 163, 258, 401
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	2 cut(s)	543, 630
BspANI	GGCC	2 cut(s)	224, 695
BspCNI	CTCAG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	694
BspPI	GGATC	2 cut(s)	87, 409
BsrBI	CCGCTC	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	40, 146
BssECI	CCNNGG	2 cut(s)	251, 411
BssMI	GATC	4 cut(s)	92, 163, 258, 401
BssSI	CACGAG	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	539
BstDSI	CCRYGG	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	95, 166, 261, 404
BstMBI	GATC	4 cut(s)	92, 163, 258, 401
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	224, 695
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	520, 693
Csp6I	GTAC	3 cut(s)	9, 149, 194
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	3 cut(s)	60, 226, 252
CviJI	RGCY	6 cut(s)	170, 224, 508, 562, 659, 695
CviKI_1	RGCY	6 cut(s)	170, 224, 508, 562, 659, 695
CviQI	GTAC	3 cut(s)	9, 149, 194
DdeI	CTNAG	1 cut(s)	539
DpnI	GATC	4 cut(s)	94, 165, 260, 403
DpnII	GATC	4 cut(s)	92, 163, 258, 401
DraIII	CACNNNGTG	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	520
Eco88I	CYCGRG	2 cut(s)	410, 526
Eco91I	GGTNACC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	693
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	3 cut(s)	63, 229, 255
FatI	CATG	3 cut(s)	59, 225, 251
FokI	GGATG	1 cut(s)	296
FspBI	CTAG	3 cut(s)	167, 234, 509
GlaI	GCGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	224, 695
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	63, 229, 255
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	39, 502, 512, 592
HphI	GGTGA	3 cut(s)	200, 358, 358
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	119, 559, 668
Hpy188III	TCNNGA	5 cut(s)	54, 299, 526, 589, 616
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	63, 387, 476, 584
HpyF3I	CTNAG	1 cut(s)	539
Hsp92II	CATG	3 cut(s)	63, 229, 255
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	92, 163, 258, 401
LpnPI	CCDG	6 cut(s)	21, 159, 183, 206, 210, 456
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	3 cut(s)	167, 234, 509
MaeIII	GTNAC	3 cut(s)	122, 316, 530
MalI	GATC	4 cut(s)	94, 165, 260, 403
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	4 cut(s)	92, 163, 258, 401
MboII	GAAGA	3 cut(s)	268, 314, 355
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	233, 637
MluCI	AATT	7 cut(s)	101, 178, 417, 496, 608, 638, 681
MlyI	GAGTC	2 cut(s)	506, 511
MmeI	TCCRAC	3 cut(s)	261, 480, 668
MnlI	CCTC	4 cut(s)	379, 406, 533, 612
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	5 cut(s)	356, 491, 672, 684, 702
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	92, 163, 258, 401
NlaIII	CATG	3 cut(s)	63, 229, 255
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	526
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	39, 592
PleI	GAGTC	2 cut(s)	506, 510
PpsI	GAGTC	2 cut(s)	506, 510
PshBI	ATTAAT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	196
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	2 cut(s)	520, 693
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	10, 150, 195
RsaNI	GTAC	3 cut(s)	9, 149, 194
SaqAI	TTAA	5 cut(s)	356, 491, 672, 684, 702
Sau3AI	GATC	4 cut(s)	92, 163, 258, 401
Sau96I	GGNCC	2 cut(s)	520, 693
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	2 cut(s)	506, 511
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	233, 637
SfaNI	GCATC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	520
SlaI	CTCGAG	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	7 cut(s)	101, 178, 417, 496, 608, 638, 681
SsiI	CCGC	2 cut(s)	543, 630
SspMI	CTAG	3 cut(s)	167, 234, 509
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	527
TasI	AATT	7 cut(s)	101, 178, 417, 496, 608, 638, 681
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	39, 592
Tru1I	TTAA	5 cut(s)	356, 491, 672, 684, 702
Tru9I	TTAA	5 cut(s)	356, 491, 672, 684, 702
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	526
XspI	CTAG	3 cut(s)	167, 234, 509
ZrmI	AGTACT	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.