Rh1CG267600

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007144
Physical Location & Seq
Reverse (-)
53275392 .. 53279798
4407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG267600.1

Sequence Viewer

Length: 1224 bp
ATGGCGTGTAGACGTGCTGTCTCCACCACGGCGACCCTTGCCACGAGACGTTTCCATCCTTCATTGAGTCACGTCCTTCATGATAACAATGAGGATAATAAATCACATTCACCAAGTTCAAGCACTCAACCCAACATAAAGAGTATTTTGCCAAGTGGATCTTACAACTCGACAGTTGGATTTAGCTTTGGTTCTCAAAGTAGAGGGAGGACAGGCTCATCATTGGCTTGGAAAATGGGCCTTGGATCCTTTCATTATAGGCATATGTCAACCACAATTGGTGATGGGTCTGATAAGATGGATGACATTGGATATGTTGCGGAGGTTATTACAGATAAGACTGTGGAAGTAGTTACCTTCCAAGGACCGGCTGTGAGTGAAGTGGCTGTTGCTGCAGCAGATTCTTTCTTGCCTGTTGCTGGCCTACAATACTTGATCGATTTCGTTCATTCTCTTACCGGATTGAATTGGTGGGCATCAATAGCTTTAACAACTATTTTGATTCGAGTGGCTACAATTCCTCTTCTTATTGATCAACTCAGGGCTACTACAAAGCTCAATTTGATGAGGCCTCGTTTAGAGCAGTTGAAACAAGAGATGCAAAATATGGAAGCAGATCCTGAGGTTTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCAATGAATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTATTAGAAACATGGCTGAGAAAGTTCCGTCTTTTCAAAATGGTGGAGCTCTCTGGTTTACTGATCTCACAACTCCAGATAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTTGAGATAAACCAACAAAACCTAGGGTTCTTTCAGCTCTGGTATTTGTTTGAGCTAATCTTTTCTAAAACATTTCAATCTGACGGACCGTATTATCTTCCTGCAGCAATTAGGCGTCCAGAGGTGAAGAGTTTACTTAATCTTCCTGAAATTCCTGAGACACCTCCTACTGCATCACAGCCTCCATTTTCTTTGTTTGAAGCAGTTAAAAAAGACACTACTATTGAATCCGAACCTTCATTACGCACAGAGACATCGAAGGCTTCTGACAGAAGCATATCGTCGTCTTCAATTCTCAAGCAGAGACTCAAAAGTCTAGAGAAGCATGTCAAGGGGAAAAGGAAACAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

407

Amino Acids

45.38

Weight (kDa)

8.98

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 157 - 311 1.1e-21 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1182
AccI GTMKAC 1 cut(s) 10
AciI CCGC 1 cut(s) 320
AclWI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
AcsI RAATTY 1 cut(s) 1020
AcyI GRCGYC 1 cut(s) 985
AfiI CCNNNNNNNGG 2 cut(s) 367, 419
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 2 cut(s) 14, 73
AluBI AGCT 7 cut(s) 186, 485, 556, 732, 791, 907, 925
AluI AGCT 7 cut(s) 186, 485, 556, 732, 791, 907, 925
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 5 cut(s) 25, 40, 1022, 1115, 1168
AlwI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
AlwNI CAGNNNCTG 1 cut(s) 620
AoxI GGCC 3 cut(s) 238, 421, 569
ApeKI GCWGC 3 cut(s) 392, 395, 974
ApoI RAATTY 1 cut(s) 1020
AspA2I CCTAGG 1 cut(s) 892
AspS9I GGNCC 4 cut(s) 238, 365, 716, 956
AsuHPI GGTGA 3 cut(s) 102, 293, 1006
AvaII GGWCC 3 cut(s) 365, 716, 956
AvrII CCTAGG 1 cut(s) 892
AxyI CCTNAGG 1 cut(s) 621
BamHI GGATCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 793
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 3 cut(s) 379, 407, 986
BccI CCATC 4 cut(s) 63, 278, 292, 646
BceAI ACGGC 1 cut(s) 45
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 5 cut(s) 25, 40, 1022, 1115, 1168
BfaI CTAG 2 cut(s) 893, 1187
BfmI CTRYAG 2 cut(s) 393, 972
BisI GCNGC 3 cut(s) 393, 396, 975
BlnI CCTAGG 1 cut(s) 892
BlsI GCNGC 3 cut(s) 394, 397, 976
Bme18I GGWCC 3 cut(s) 365, 716, 956
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 2 cut(s) 14, 73
BmgT120I GGNCC 4 cut(s) 238, 365, 716, 956
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 3 cut(s) 485, 588, 1052
BpiI GAAGAC 1 cut(s) 1149
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 1151
Bsa29I ATCGAT 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 985
BsaJI CCNNGG 4 cut(s) 27, 241, 361, 892
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 419
Bse118I RCCGGY 1 cut(s) 367
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 858
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 27, 241, 361, 892
BseGI GGATG 3 cut(s) 55, 307, 654
BseLI CCNNNNNNNGG 2 cut(s) 367, 419
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 4 cut(s) 553, 612, 750, 1017
BseXI GCAGC 3 cut(s) 379, 407, 986
BshFI GGCC 3 cut(s) 240, 423, 571
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 2 cut(s) 368, 459
BslI CCNNNNNNNGG 2 cut(s) 367, 419
BsmAI GTCTC 5 cut(s) 25, 40, 1022, 1115, 1168
BsmBI CGTCTC 1 cut(s) 40
BsnI GGCC 3 cut(s) 240, 423, 571
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BspACI CCGC 1 cut(s) 320
BspANI GGCC 3 cut(s) 240, 423, 571
BspCNI CTCAG 4 cut(s) 552, 613, 751, 1018
BspDI ATCGAT 1 cut(s) 438
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 247
BspMAI CTGCAG 2 cut(s) 397, 976
BspPI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 27, 241, 361, 892
BssMI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BssNI GRCGYC 1 cut(s) 985
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 3 cut(s) 241, 361, 892
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 175, 343, 871, 960
Bst6I CTCTTC 2 cut(s) 528, 992
BstACI GRCGYC 1 cut(s) 985
BstC8I GCNNGC 2 cut(s) 421, 827
BstDEI CTNAG 4 cut(s) 539, 621, 759, 1026
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 55, 307, 654
BstKTI GATC 8 cut(s) 161, 248, 438, 535, 619, 808, 834, 867
BstMAI GTCTC 5 cut(s) 25, 40, 1022, 1115, 1168
BstMBI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BstMWI GCNNNNNNNGC 3 cut(s) 38, 392, 482
BstNSI RCATGY 2 cut(s) 829, 1199
BstSFI CTRYAG 2 cut(s) 393, 972
BstV1I GCAGC 3 cut(s) 379, 407, 986
BstV2I GAAGAC 1 cut(s) 1149
BstX2I RGATCY 3 cut(s) 158, 245, 616
BstYI RGATCY 3 cut(s) 158, 245, 616
Bsu15I ATCGAT 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 621
BsuRI GGCC 3 cut(s) 240, 423, 571
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 2 cut(s) 14, 73
BtsCI GGATG 3 cut(s) 55, 307, 654
Cac8I GCNNGC 2 cut(s) 421, 827
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 238, 365, 716, 956
ClaI ATCGAT 1 cut(s) 438
CpoI CGGWCCG 1 cut(s) 956
CseI GACGC 1 cut(s) 974
CspI CGGWCCG 1 cut(s) 956
CviAII CATG 4 cut(s) 80, 754, 826, 1196
DdeI CTNAG 4 cut(s) 539, 621, 759, 1026
DpnI GATC 8 cut(s) 160, 247, 437, 534, 618, 807, 833, 866
DpnII GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
DrdI GACNNNNNNGTC 1 cut(s) 1182
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 528, 992
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 2 cut(s) 528, 992
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 3 cut(s) 241, 361, 892
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 3 cut(s) 365, 716, 956
Eco53kI GAGCTC 1 cut(s) 791
Eco81I CCTNAGG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 716
EcoT14I CCWWGG 3 cut(s) 241, 361, 892
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 3 cut(s) 241, 361, 892
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 83, 757, 829, 1199
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 4 cut(s) 79, 753, 825, 1195
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 393, 396, 975
FokI GGATG 3 cut(s) 42, 314, 661
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 3 cut(s) 393, 396, 975
FspBI CTAG 2 cut(s) 893, 1187
GluI GCNGC 3 cut(s) 393, 396, 975
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 3 cut(s) 240, 423, 571
HapII CCGG 2 cut(s) 368, 459
HgaI GACGC 1 cut(s) 974
Hin1I GRCGYC 1 cut(s) 985
Hin1II CATG 4 cut(s) 83, 757, 829, 1199
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 6 cut(s) 67, 401, 502, 675, 1097, 1176
HpaII CCGG 2 cut(s) 368, 459
HphI GGTGA 3 cut(s) 102, 293, 1006
Hpy166II GTNNAC 4 cut(s) 11, 270, 801, 1004
Hpy188I TCNGA 6 cut(s) 292, 642, 846, 952, 1102, 1138
Hpy188III TCNNGA 8 cut(s) 80, 620, 818, 862, 989, 1016, 1025, 1187
Hpy8I GTNNAC 4 cut(s) 11, 270, 801, 1004
Hpy99I CGWCG 1 cut(s) 1156
HpyAV CCTTC 7 cut(s) 69, 86, 367, 629, 845, 1116, 1123
HpyCH4III ACNGT 4 cut(s) 175, 343, 871, 960
HpyCH4IV ACGT 3 cut(s) 13, 49, 72
HpyCH4V TGCA 4 cut(s) 395, 601, 974, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 392, 482
HpyF3I CTNAG 4 cut(s) 539, 621, 759, 1026
HpySE526I ACGT 3 cut(s) 13, 49, 72
Hsp92I GRCGYC 1 cut(s) 985
Hsp92II CATG 4 cut(s) 83, 757, 829, 1199
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 3 cut(s) 379, 407, 986
LweI GCATC 3 cut(s) 485, 588, 1052
MaeI CTAG 2 cut(s) 893, 1187
MaeII ACGT 3 cut(s) 13, 49, 72
MaeIII GTNAC 3 cut(s) 68, 352, 676
MalI GATC 8 cut(s) 160, 247, 437, 534, 618, 807, 833, 866
MboI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
MboII GAAGA 5 cut(s) 515, 959, 1004, 1009, 1149
MfeI CAATTG 2 cut(s) 276, 692
MflI RGATCY 3 cut(s) 158, 245, 616
MhlI GDGCHC 1 cut(s) 793
MlyI GAGTC 3 cut(s) 76, 684, 1170
MmeI TCCRAC 1 cut(s) 157
MseI TTAA 4 cut(s) 488, 629, 1008, 1077
MspI CCGG 2 cut(s) 368, 459
MunI CAATTG 2 cut(s) 276, 692
MwoI GCNNNNNNNGC 3 cut(s) 38, 392, 482
NdeI CATATG 1 cut(s) 264
NdeII GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
NlaIII CATG 4 cut(s) 83, 757, 829, 1199
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 68, 676
NspI RCATGY 2 cut(s) 829, 1199
PaeI GCATGC 1 cut(s) 829
PagI TCATGA 1 cut(s) 79
PceI AGGCCT 1 cut(s) 571
PfeI GAWTC 3 cut(s) 401, 502, 1097
PkrI GCNGC 3 cut(s) 394, 397, 976
PleI GAGTC 3 cut(s) 75, 683, 1170
PpsI GAGTC 3 cut(s) 75, 683, 1170
PpuMI RGGWCCY 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 4 cut(s) 238, 365, 716, 956
PspPPI RGGWCCY 1 cut(s) 716
PsrI GAACNNNNNNTAC 2 cut(s) 1095, 1127
PstI CTGCAG 2 cut(s) 397, 976
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 3 cut(s) 158, 245, 616
Rsr2I CGGWCCG 1 cut(s) 956
RsrII CGGWCCG 1 cut(s) 956
SacI GAGCTC 1 cut(s) 793
SaqAI TTAA 4 cut(s) 488, 629, 1008, 1077
SatI GCNGC 3 cut(s) 393, 396, 975
Sau3AI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
Sau96I GGNCC 4 cut(s) 238, 365, 716, 956
SchI GAGTC 3 cut(s) 76, 684, 1170
SduI GDGCHC 1 cut(s) 793
SfaNI GCATC 3 cut(s) 485, 588, 1052
SfcI CTRYAG 2 cut(s) 393, 972
SinI GGWCC 3 cut(s) 365, 716, 956
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SphI GCATGC 1 cut(s) 829
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 893, 1187
SstI GAGCTC 1 cut(s) 793
StuI AGGCCT 1 cut(s) 571
StyI CCWWGG 3 cut(s) 241, 361, 892
TaaI ACNGT 4 cut(s) 175, 343, 871, 960
TaiI ACGT 3 cut(s) 16, 52, 75
TaqI TCGA 4 cut(s) 170, 438, 505, 1127
TfiI GAWTC 3 cut(s) 401, 502, 1097
Tru1I TTAA 4 cut(s) 488, 629, 1008, 1077
Tru9I TTAA 4 cut(s) 488, 629, 1008, 1077
TseFI GTSAC 2 cut(s) 68, 676
TseI GCWGC 3 cut(s) 392, 395, 974
Tsp45I GTSAC 2 cut(s) 68, 676
TspDTI ATGAA 8 cut(s) 51, 68, 242, 437, 681, 697, 715, 1098
TspGWI ACGGA 4 cut(s) 661, 687, 759, 969
VpaK11BI GGWCC 3 cut(s) 365, 716, 956
XapI RAATTY 1 cut(s) 1020
XbaI TCTAGA 1 cut(s) 1186
XceI RCATGY 2 cut(s) 829, 1199
XmaJI CCTAGG 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 2 cut(s) 893, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.