RchiOBHm_Chr1g0359321

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007144
Physical Location & Seq
Reverse (-)
51333327 .. 51339239
5913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58438

Sequence Viewer

Length: 1284 bp
ATGGCGTGTAGACGTGCTGTCTCCACCACGGCGACCCTTGCCACGAGACGTTTCCATCCTTCATTGAGTCACGTCCTTCATGATAACAATGAGGATACTAAATCACATTCACCGAGTTCAAGCACTCAACCCAACATAAAGAGTATTTTGCCAAGTGGATCTTACAACTCGACAGTTGGATTTAGCTTTGGTTCTCAAAGTAGAGGGAGGACAGGCTCATCATTGGCTTGGAAAATGGGCCTTGGATCCTTTCATTATAGGCATATGTCAACCACAATTGGTGATGGGTCTGATAAGATGGATGACATTGGATATGTTGCGGAGGTTATTACAGATAAGACTGTGGAAGTAGTTACCTCCCAAGGACCGGCTGTGAGTGAAGTGGCTGTTGCTGCAGCAGATTCTTTCTTGCCTGTTGCTGGCCTACAATACTTGATCGATTTCGTTCATTCTCTTACCGGATTGAATTGGTGGGCATCAATAGCTTTAACAACTATTTTGATTCGAGTGGCTACAATTCCTCTTCTTATTGATCAACTCAGGGCTACTACAAAGCTCAATTTGATGAGGCCTCGTTTAGAGCAGTTGAAACAAGAGATGCAAAATATGGAAGCAGATCCTGAGGTTTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGAATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTATTAGAAACATGGCTGAGAAAGTTCCGTCTTTTCAAAATGGTGGAGCTCTCTGGTTTACTGATCTCACAACTCCAGATAGCGTGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTTGAGTGCAACATGCAGGAAGGTCTGGAAGGAAATCCTGTTGCCCAAACTATGAAAACCTATTCTAGAATCCTAGCTGTCATTGCAGTTCCAGTTATGATGAGCTTCCCCAAGGCACTGTTCTGTTATTGGCTCACCTCCAACATCTTCTCTCTTACATATGGATTAGCAATTAGGCGTCCAGAGGTGAAGAGTTTACTTAATCTTCCTGAAATTCCTGAGACACCTGCTGCATCACAGCCTCCATTTTCTTTGTTTGAAGCAGTTAAAAAAGACACTACTATTGAATCCGAACCTTCATTACGCACAGAGACATCGAAGGCTTCTGACAGAAGCATATCGTCATCTTCAATTCTCAAGCAGAGACTCAAAAGTCTAGAGAAGCATGTCAAGGGGAAAAGGAAACAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

427

Amino Acids

47.23

Weight (kDa)

9.1

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 157 - 349 1.9e-29 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1105
AasI GACNNNNNNGTC 1 cut(s) 1242
Acc36I ACCTGC 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 10
AciI CCGC 1 cut(s) 320
AclWI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
AcsI RAATTY 1 cut(s) 1083
AcyI GRCGYC 1 cut(s) 1048
AfiI CCNNNNNNNGG 2 cut(s) 367, 419
AgsI TTSAA 9 cut(s) 120, 466, 589, 697, 713, 779, 1130, 1157, 1221
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 2 cut(s) 14, 73
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AluBI AGCT 7 cut(s) 186, 485, 556, 732, 791, 947, 975
AluI AGCT 7 cut(s) 186, 485, 556, 732, 791, 947, 975
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 5 cut(s) 25, 40, 1085, 1175, 1228
AlwI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
AlwNI CAGNNNCTG 1 cut(s) 620
AoxI GGCC 3 cut(s) 238, 421, 569
ApeKI GCWGC 3 cut(s) 392, 395, 1100
ApoI RAATTY 1 cut(s) 1083
AspS9I GGNCC 3 cut(s) 238, 365, 716
AsuHPI GGTGA 4 cut(s) 102, 293, 997, 1069
AvaII GGWCC 2 cut(s) 365, 716
AxyI CCTNAGG 1 cut(s) 621
BamHI GGATCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 793
BauI CACGAG 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 3 cut(s) 379, 407, 1087
BccI CCATC 4 cut(s) 63, 278, 292, 646
BceAI ACGGC 1 cut(s) 45
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 5 cut(s) 25, 40, 1085, 1175, 1228
BfaI CTAG 3 cut(s) 936, 944, 1247
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 1105
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 3 cut(s) 393, 396, 1101
BlsI GCNGC 3 cut(s) 394, 397, 1102
Bme18I GGWCC 2 cut(s) 365, 716
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 2 cut(s) 14, 73
BmgT120I GGNCC 3 cut(s) 238, 365, 716
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 3 cut(s) 485, 588, 1112
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 1211
Bsa29I ATCGAT 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 1048
BsaJI CCNNGG 4 cut(s) 27, 241, 361, 981
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 419
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 962
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 2 cut(s) 858, 951
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 27, 241, 361, 981
BseGI GGATG 3 cut(s) 55, 307, 654
BseLI CCNNNNNNNGG 2 cut(s) 367, 419
BseMI GCAATG 2 cut(s) 858, 951
BseMII CTCAG 4 cut(s) 553, 612, 750, 1080
BseNI ACTGG 1 cut(s) 962
BseXI GCAGC 3 cut(s) 379, 407, 1087
BshFI GGCC 3 cut(s) 240, 423, 571
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 2 cut(s) 368, 459
BslI CCNNNNNNNGG 2 cut(s) 367, 419
BsmAI GTCTC 5 cut(s) 25, 40, 1085, 1175, 1228
BsmBI CGTCTC 1 cut(s) 40
BsnI GGCC 3 cut(s) 240, 423, 571
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BspACI CCGC 1 cut(s) 320
BspANI GGCC 3 cut(s) 240, 423, 571
BspCNI CTCAG 4 cut(s) 552, 613, 751, 1081
BspDI ATCGAT 1 cut(s) 438
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 6 cut(s) 166, 240, 253, 611, 826, 872
BsrDI GCAATG 2 cut(s) 858, 951
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 962
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 27, 241, 361, 981
BssMI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BssNI GRCGYC 1 cut(s) 1048
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 3 cut(s) 241, 361, 981
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 175, 343, 871, 990
Bst6I CTCTTC 2 cut(s) 528, 1055
BstACI GRCGYC 1 cut(s) 1048
BstC8I GCNNGC 2 cut(s) 421, 827
BstDEI CTNAG 4 cut(s) 539, 621, 759, 1089
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 55, 307, 654
BstKTI GATC 8 cut(s) 161, 248, 438, 535, 619, 808, 834, 867
BstMAI GTCTC 5 cut(s) 25, 40, 1085, 1175, 1228
BstMBI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
BstMWI GCNNNNNNNGC 4 cut(s) 38, 392, 482, 953
BstNSI RCATGY 2 cut(s) 886, 1259
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 379, 407, 1087
BstX2I RGATCY 3 cut(s) 158, 245, 616
BstYI RGATCY 3 cut(s) 158, 245, 616
Bsu15I ATCGAT 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 621
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 240, 423, 571
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 2 cut(s) 14, 73
BtsCI GGATG 3 cut(s) 55, 307, 654
BtsIMutI CAGTG 1 cut(s) 986
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 2 cut(s) 421, 827
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 238, 365, 716
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 1037
CviAII CATG 5 cut(s) 80, 665, 754, 883, 1256
DdeI CTNAG 4 cut(s) 539, 621, 759, 1089
DpnI GATC 8 cut(s) 160, 247, 437, 534, 618, 807, 833, 866
DpnII GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
DrdI GACNNNNNNGTC 1 cut(s) 1242
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 1242
Eam1104I CTCTTC 2 cut(s) 528, 1055
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 2 cut(s) 528, 1055
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 3 cut(s) 241, 361, 981
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 365, 716
Eco53kI GAGCTC 1 cut(s) 791
Eco81I CCTNAGG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 716
EcoT14I CCWWGG 3 cut(s) 241, 361, 981
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 3 cut(s) 241, 361, 981
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 5 cut(s) 83, 668, 757, 886, 1259
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 5 cut(s) 79, 664, 753, 882, 1255
FauNDI CATATG 2 cut(s) 264, 1030
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 393, 396, 1101
FokI GGATG 3 cut(s) 42, 314, 661
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 3 cut(s) 393, 396, 1101
FspBI CTAG 3 cut(s) 936, 944, 1247
GluI GCNGC 3 cut(s) 393, 396, 1101
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 3 cut(s) 240, 423, 571
HapII CCGG 2 cut(s) 368, 459
HgaI GACGC 1 cut(s) 1037
Hin1I GRCGYC 1 cut(s) 1048
Hin1II CATG 5 cut(s) 83, 668, 757, 886, 1259
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 7 cut(s) 67, 401, 502, 675, 939, 1157, 1236
HpaII CCGG 2 cut(s) 368, 459
HphI GGTGA 4 cut(s) 102, 293, 997, 1069
Hpy166II GTNNAC 4 cut(s) 11, 270, 801, 1067
Hpy188I TCNGA 5 cut(s) 292, 642, 846, 1162, 1198
Hpy8I GTNNAC 4 cut(s) 11, 270, 801, 1067
HpyAV CCTTC 8 cut(s) 69, 86, 629, 845, 884, 893, 1176, 1183
HpyCH4III ACNGT 4 cut(s) 175, 343, 871, 990
HpyCH4IV ACGT 3 cut(s) 13, 49, 72
HpyCH4V TGCA 6 cut(s) 395, 601, 879, 886, 956, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 392, 482, 953
HpyF3I CTNAG 4 cut(s) 539, 621, 759, 1089
HpySE526I ACGT 3 cut(s) 13, 49, 72
Hsp92I GRCGYC 1 cut(s) 1048
Hsp92II CATG 5 cut(s) 83, 668, 757, 886, 1259
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 3 cut(s) 379, 407, 1087
LweI GCATC 3 cut(s) 485, 588, 1112
MaeI CTAG 3 cut(s) 936, 944, 1247
MaeII ACGT 3 cut(s) 13, 49, 72
MaeIII GTNAC 3 cut(s) 68, 352, 676
MalI GATC 8 cut(s) 160, 247, 437, 534, 618, 807, 833, 866
MboI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
MboII GAAGA 5 cut(s) 515, 1009, 1067, 1072, 1209
MfeI CAATTG 2 cut(s) 276, 692
MflI RGATCY 3 cut(s) 158, 245, 616
MhlI GDGCHC 1 cut(s) 793
MlyI GAGTC 3 cut(s) 76, 684, 1230
MmeI TCCRAC 2 cut(s) 157, 1035
MseI TTAA 4 cut(s) 488, 629, 1071, 1137
MspI CCGG 2 cut(s) 368, 459
MunI CAATTG 2 cut(s) 276, 692
MwoI GCNNNNNNNGC 4 cut(s) 38, 392, 482, 953
NdeI CATATG 2 cut(s) 264, 1030
NdeII GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
NlaIII CATG 5 cut(s) 83, 668, 757, 886, 1259
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 68, 676
NspI RCATGY 2 cut(s) 886, 1259
PagI TCATGA 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 571
PfeI GAWTC 4 cut(s) 401, 502, 939, 1157
PkrI GCNGC 3 cut(s) 394, 397, 1102
PleI GAGTC 3 cut(s) 75, 683, 1230
PpsI GAGTC 3 cut(s) 75, 683, 1230
PpuMI RGGWCCY 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 238, 365, 716
PspPPI RGGWCCY 1 cut(s) 716
PsrI GAACNNNNNNTAC 2 cut(s) 1155, 1187
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 3 cut(s) 158, 245, 616
SacI GAGCTC 1 cut(s) 793
SaqAI TTAA 4 cut(s) 488, 629, 1071, 1137
SatI GCNGC 3 cut(s) 393, 396, 1101
Sau3AI GATC 8 cut(s) 158, 245, 435, 532, 616, 805, 831, 864
Sau96I GGNCC 3 cut(s) 238, 365, 716
SchI GAGTC 3 cut(s) 76, 684, 1230
SduI GDGCHC 1 cut(s) 793
SfaNI GCATC 3 cut(s) 485, 588, 1112
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 365, 716
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 1 cut(s) 320
SspMI CTAG 3 cut(s) 936, 944, 1247
SstI GAGCTC 1 cut(s) 793
StuI AGGCCT 1 cut(s) 571
StyI CCWWGG 3 cut(s) 241, 361, 981
TaaI ACNGT 4 cut(s) 175, 343, 871, 990
TaiI ACGT 3 cut(s) 16, 52, 75
TaqI TCGA 4 cut(s) 170, 438, 505, 1187
TfiI GAWTC 4 cut(s) 401, 502, 939, 1157
Tru1I TTAA 4 cut(s) 488, 629, 1071, 1137
Tru9I TTAA 4 cut(s) 488, 629, 1071, 1137
TscAI CASTG 1 cut(s) 993
TseFI GTSAC 2 cut(s) 68, 676
TseI GCWGC 3 cut(s) 392, 395, 1100
Tsp45I GTSAC 2 cut(s) 68, 676
TspDTI ATGAA 9 cut(s) 51, 68, 242, 437, 681, 697, 715, 938, 1158
TspGWI ACGGA 3 cut(s) 661, 687, 759
TspRI CASTG 1 cut(s) 993
VpaK11BI GGWCC 2 cut(s) 365, 716
XapI RAATTY 1 cut(s) 1083
XbaI TCTAGA 2 cut(s) 935, 1246
XceI RCATGY 2 cut(s) 886, 1259
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 3 cut(s) 936, 944, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.