Rw1G037650

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007144
Physical Location & Seq
Reverse (-)
65292025 .. 65293290
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037650.1

Sequence Viewer

Length: 1110 bp
ATGGCGTGTAGACGTGCTGTCTCCACCACGGCGACCCTTGCTACTTCAAGCACTCAACCCAACATAAAGAGTATTTTGCCAAGTGGATCTTACAACTCGACGGTTGGATTTAGCTTTGGTTCTCAAAGAAGAGGGGGGTCAGGATCATCATTGGCTTGGAGCCTTGGATCCTTCCGTTATAGGCATATGTCAACCACGATTGGTGATAAGACTGTGGAAGTAGTTACCTCCCAAGGACCGGCTGTGAGTGAAGTGGCTGTTGCTGCAGCAGATTCTTTCTTGCCAGTTGCTGCTTTAACAACTATTTTTATTCGAGTGGCTACAATTCCTCTTCTTATTGATCAACTCAGGGCTACTACAAAACTCAATTTGATGAGGCCTCGTTTAGAGCAGTTGAAACAAGAGATGCAAAATATGGAAGCAGATCCTGAGCTTTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGAATACGAAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGGTCCTATTTTCATCAGCTTCTTTCTTGCTTTTAGAAACAAGGCTGAGAAAGTTCCGACTTTTCAAAATGGTGGAGCTCTCTGGTTTACTGATCTCACAACTCCAGATAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCACAGTTGAGTGCAACATGCAGGAAGGTCTGGAAGGAAATCCTGTTGCCCAAACTATGAAAACCTATTCTAGAATCCTAGCTGTCATTGCAATTCCAGTTATGATGAGCTTCCCCAAGGCACTGTTCTGTTATTGGCTCACCTCCAACATCTTCTCTCTTACATATGGATTAGCAATTAGGCGTCCAGAGGTGCAGAGTTTACTTAATCTTCCTGAAATTCCTGAGCCTCCTCCTACTGCATCACAGCCTCCATTTTCTATATTTGAAGCAGTTAAAAAAGACACTACTATTGAATCCGAACCTTCATTACGCACAGAGACATCGAAGGTTTCTGACAGAAGCATATCGTCGTCTTCAATTCTCAAGCAAAGACTCAAAAGTCTAGAGAAGCATGTCAAGGGGAAAAAGAAACAAATTAGTCAAAGATCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

369

Amino Acids

40.86

Weight (kDa)

9.61

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 99 - 285 3.1e-27 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1053
AccI GTMKAC 1 cut(s) 10
AclWI GGATC 7 cut(s) 94, 151, 162, 175, 419, 634, 680
AcsI RAATTY 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 856
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 8 cut(s) 48, 397, 505, 521, 587, 941, 968, 1032
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AluBI AGCT 6 cut(s) 114, 433, 540, 599, 755, 783
AluI AGCT 6 cut(s) 114, 433, 540, 599, 755, 783
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 25, 986
AlwI GGATC 7 cut(s) 94, 151, 162, 175, 419, 634, 680
AlwNI CAGNNNCTG 2 cut(s) 290, 428
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 263, 266, 290
ApoI RAATTY 1 cut(s) 891
AspS9I GGNCC 2 cut(s) 236, 524
AsuHPI GGTGA 2 cut(s) 215, 805
AvaII GGWCC 2 cut(s) 236, 524
BamHI GGATCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 250, 277, 278
BccI CCATC 1 cut(s) 454
BceAI ACGGC 1 cut(s) 45
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 25, 986
BfaI CTAG 3 cut(s) 744, 752, 1058
BfmI CTRYAG 1 cut(s) 264
BglII AGATCT 1 cut(s) 1100
BisI GCNGC 3 cut(s) 264, 267, 291
BlsI GCNGC 3 cut(s) 265, 268, 292
Bme18I GGWCC 2 cut(s) 236, 524
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 236, 524
BmiI GGNNCC 2 cut(s) 161, 169
BmsI GCATC 2 cut(s) 396, 923
BpiI GAAGAC 1 cut(s) 1020
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 2 cut(s) 429, 897
BpuEI CTTGAG 1 cut(s) 1022
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 4 cut(s) 27, 163, 232, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 284, 770
Bse3DI GCAATG 2 cut(s) 666, 759
BseDI CCNNGG 4 cut(s) 27, 163, 232, 789
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 2 cut(s) 666, 759
BseMII CTCAG 4 cut(s) 361, 420, 558, 888
BseNI ACTGG 2 cut(s) 284, 770
BseRI GAGGAG 1 cut(s) 894
BseXI GCAGC 3 cut(s) 250, 277, 278
BsgI GTGCAG 1 cut(s) 887
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 25, 986
BsnI GGCC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 4 cut(s) 360, 421, 559, 889
BspLI GGNNCC 2 cut(s) 161, 169
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 7 cut(s) 94, 151, 162, 175, 419, 634, 680
BsrDI GCAATG 2 cut(s) 666, 759
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 2 cut(s) 284, 770
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 4 cut(s) 27, 163, 232, 789
BssMI GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
BssNI GRCGYC 1 cut(s) 856
BssT1I CCWWGG 3 cut(s) 163, 232, 789
Bst4CI ACNGT 4 cut(s) 103, 214, 679, 798
Bst6I CTCTTC 2 cut(s) 124, 336
BstACI GRCGYC 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 4 cut(s) 347, 429, 567, 897
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 9 cut(s) 89, 146, 170, 343, 427, 616, 642, 675, 1103
BstMAI GTCTC 2 cut(s) 25, 986
BstMBI GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
BstMWI GCNNNNNNNGC 3 cut(s) 38, 263, 761
BstNSI RCATGY 3 cut(s) 637, 694, 1070
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 250, 277, 278
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 4 cut(s) 86, 167, 424, 1100
BstYI RGATCY 4 cut(s) 86, 167, 424, 1100
BsuRI GGCC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 794
Cac8I GCNNGC 1 cut(s) 635
CaiI CAGNNNCTG 2 cut(s) 290, 428
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 236, 524
CseI GACGC 1 cut(s) 845
CviAII CATG 4 cut(s) 473, 634, 691, 1067
DdeI CTNAG 4 cut(s) 347, 429, 567, 897
DpnI GATC 9 cut(s) 88, 145, 169, 342, 426, 615, 641, 674, 1102
DpnII GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
DrdI GACNNNNNNGTC 1 cut(s) 1053
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 1053
Eam1104I CTCTTC 2 cut(s) 124, 336
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 2 cut(s) 124, 336
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 163, 232, 789
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 236, 524
Eco53kI GAGCTC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 524
EcoT14I CCWWGG 3 cut(s) 163, 232, 789
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 3 cut(s) 163, 232, 789
FaeI CATG 4 cut(s) 476, 637, 694, 1070
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FatI CATG 4 cut(s) 472, 633, 690, 1066
FauNDI CATATG 2 cut(s) 186, 838
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 264, 267, 291
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 264, 267, 291
FspBI CTAG 3 cut(s) 744, 752, 1058
GluI GCNGC 3 cut(s) 264, 267, 291
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 1 cut(s) 379
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 845
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 4 cut(s) 476, 637, 694, 1070
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 4 cut(s) 272, 747, 968, 1047
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 215, 805
Hpy166II GTNNAC 4 cut(s) 11, 192, 609, 875
Hpy188I TCNGA 5 cut(s) 450, 579, 654, 973, 1009
Hpy8I GTNNAC 4 cut(s) 11, 192, 609, 875
Hpy99I CGWCG 2 cut(s) 103, 1027
HpyAV CCTTC 7 cut(s) 181, 437, 653, 692, 701, 987, 994
HpyCH4III ACNGT 4 cut(s) 103, 214, 679, 798
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 7 cut(s) 266, 409, 687, 694, 764, 868, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 263, 761
HpyF3I CTNAG 4 cut(s) 347, 429, 567, 897
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 4 cut(s) 476, 637, 694, 1070
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
LmnI GCTCC 2 cut(s) 159, 596
Lsp1109I GCAGC 3 cut(s) 250, 277, 278
LweI GCATC 2 cut(s) 396, 923
MaeI CTAG 3 cut(s) 744, 752, 1058
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 223, 484
MalI GATC 9 cut(s) 88, 145, 169, 342, 426, 615, 641, 674, 1102
MboI GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
MboII GAAGA 5 cut(s) 141, 323, 817, 875, 1020
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 4 cut(s) 86, 167, 424, 1100
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 9 cut(s) 324, 367, 500, 648, 765, 849, 891, 1032, 1089
MlyI GAGTC 1 cut(s) 1041
MmeI TCCRAC 3 cut(s) 85, 602, 843
MseI TTAA 4 cut(s) 296, 437, 879, 948
MspI CCGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 500
MwoI GCNNNNNNNGC 3 cut(s) 38, 263, 761
NdeI CATATG 2 cut(s) 186, 838
NdeII GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
NlaIII CATG 4 cut(s) 476, 637, 694, 1070
NlaIV GGNNCC 2 cut(s) 161, 169
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 3 cut(s) 637, 694, 1070
PaeI GCATGC 1 cut(s) 637
PceI AGGCCT 1 cut(s) 379
PfeI GAWTC 3 cut(s) 272, 747, 968
PkrI GCNGC 3 cut(s) 265, 268, 292
PleI GAGTC 1 cut(s) 1041
PpsI GAGTC 1 cut(s) 1041
PpuMI RGGWCCY 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 161, 169
PspPI GGNCC 2 cut(s) 236, 524
PspPPI RGGWCCY 1 cut(s) 524
PsrI GAACNNNNNNTAC 2 cut(s) 966, 998
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 2 cut(s) 290, 428
PsuI RGATCY 4 cut(s) 86, 167, 424, 1100
SacI GAGCTC 1 cut(s) 601
SaqAI TTAA 4 cut(s) 296, 437, 879, 948
SatI GCNGC 3 cut(s) 264, 267, 291
Sau3AI GATC 9 cut(s) 86, 143, 167, 340, 424, 613, 639, 672, 1100
Sau96I GGNCC 2 cut(s) 236, 524
SchI GAGTC 1 cut(s) 1041
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 2 cut(s) 396, 923
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 236, 524
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SphI GCATGC 1 cut(s) 637
Sse9I AATT 9 cut(s) 324, 367, 500, 648, 765, 849, 891, 1032, 1089
SseBI AGGCCT 1 cut(s) 379
SspMI CTAG 3 cut(s) 744, 752, 1058
SstI GAGCTC 1 cut(s) 601
StuI AGGCCT 1 cut(s) 379
StyI CCWWGG 3 cut(s) 163, 232, 789
TaaI ACNGT 4 cut(s) 103, 214, 679, 798
TaiI ACGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 98, 313, 998
TasI AATT 9 cut(s) 324, 367, 500, 648, 765, 849, 891, 1032, 1089
TfiI GAWTC 3 cut(s) 272, 747, 968
Tru1I TTAA 4 cut(s) 296, 437, 879, 948
Tru9I TTAA 4 cut(s) 296, 437, 879, 948
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 263, 266, 290
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 5 cut(s) 489, 505, 523, 746, 969
TspGWI ACGGA 2 cut(s) 164, 469
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 236, 524
XapI RAATTY 1 cut(s) 891
XbaI TCTAGA 2 cut(s) 743, 1057
XceI RCATGY 3 cut(s) 637, 694, 1070
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 3 cut(s) 744, 752, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.