Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000938.1

Orthogroup ID

OG0007144

Physical Location & Seq

Genomic Coordinates Reverse (-)

10979 .. 11494

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000938.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggtggagctctctggtttactgatctcacaactccagatgctggtccttccaattctgacagcaatgacattctggatcacagttgagtgcaacatgcaggaaggtctggaaggaaaccctgttgcccaaactatgaaaacctattctagaatcctagctgtcattgcaattccagttatgatgagcttccccaaggcactgttctgttattggctcacctccaacatcttctctcttacatatggactagcaattaggcgtccagaggtgaagagtttacttaatcttcctgaaattccagagcctcctccaactgcatcacaacctccattttctatgtttgaagcagttaaaaaagacactactattgaatccgaaccgtcattacgcacagagacatcgaaggtttctgacagaagcatatcgtcgtcttcaattctcaagcaaagactcaaaagtctagagaagcatgtcaaggggaaaaagaaacaaattagtcaaagatctacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

9.45

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46470
fragaria_vesca	FvH4_7g16310
malus_domestica	MD07G1148500.v1.1
prunus_persica	Prupe.2G187000_v2.0.a1
pyrus_communis	pycom07g14750
rosa_chinensis	RchiOBHm_Chr1g0359321 RchiOBHm_Chr1g0378431
rosa_laevigata	RLG00000027880
rosa_multiflora	Rmu_sc0000938.1_g000004 Rmu_sc0017222.1_g000003 Rmu_sc0041710.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297100
rosa_rugosa	Rorug01G0269700 Rorug01G0269800 Rorug01G0269900 Rorug01G0270000
rosa_samantha	Rh1AG283500 Rh1BG249700 Rh1BG387900 Rh1CG267600 Rh1CG401400 Rh1DG278600 Rh1DG419000
rosa_wichuraiana	Rw1G025170 Rw1G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	459
AccB7I	CCANNNNNTGG	1 cut(s)	43
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	347, 374, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	10, 161, 189
AluI	AGCT	3 cut(s)	10, 161, 189
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	211, 283
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	4 cut(s)	150, 158, 251, 464
BglII	AGATCT	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmsI	GCATC	2 cut(s)	30, 329
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	2 cut(s)	72, 165
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	2 cut(s)	72, 165
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	24, 78, 506
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	72, 165
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	24, 78, 506
BssNI	GRCGYC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	85, 204, 384
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	27, 81, 509
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	24, 78, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	100, 476
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	200
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	251
CviAII	CATG	2 cut(s)	97, 473
CviJI	RGCY	5 cut(s)	10, 161, 189, 217, 307
CviKI_1	RGCY	5 cut(s)	10, 161, 189, 217, 307
DpnI	GATC	3 cut(s)	26, 80, 508
DpnII	GATC	3 cut(s)	24, 78, 506
DrdI	GACNNNNNNGTC	1 cut(s)	459
DseDI	GACNNNNNNGTC	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	100, 476
FaiI	YATR	8 cut(s)	98, 137, 182, 244, 246, 341, 425, 474
FatI	CATG	2 cut(s)	96, 472
FauNDI	CATATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	4 cut(s)	150, 158, 251, 464
GsuI	CTGGAG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	100, 476
HinfI	GANTC	3 cut(s)	153, 374, 453
HphI	GGTGA	2 cut(s)	211, 283
Hpy166II	GTNNAC	2 cut(s)	20, 281
Hpy188I	TCNGA	3 cut(s)	60, 379, 415
Hpy188III	TCNNGA	8 cut(s)	37, 76, 110, 150, 266, 293, 302, 464
Hpy8I	GTNNAC	2 cut(s)	20, 281
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	4 cut(s)	59, 98, 107, 400
HpyCH4III	ACNGT	3 cut(s)	85, 204, 384
HpyCH4V	TGCA	4 cut(s)	93, 100, 170, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	100, 476
Kzo9I	GATC	3 cut(s)	24, 78, 506
LmnI	GCTCC	1 cut(s)	7
LweI	GCATC	2 cut(s)	30, 329
MaeI	CTAG	4 cut(s)	150, 158, 251, 464
MalI	GATC	3 cut(s)	26, 80, 508
MboI	GATC	3 cut(s)	24, 78, 506
MboII	GAAGA	4 cut(s)	223, 281, 286, 426
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	6 cut(s)	54, 171, 255, 297, 438, 495
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	2 cut(s)	249, 338
MnlI	CCTC	5 cut(s)	232, 262, 318, 321, 339
MseI	TTAA	2 cut(s)	285, 354
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	24, 78, 506
NlaIII	CATG	2 cut(s)	100, 476
NspI	RCATGY	2 cut(s)	100, 476
PfeI	GAWTC	2 cut(s)	153, 374
PflMI	CCANNNNNTGG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	46
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	285, 354
Sau3AI	GATC	3 cut(s)	24, 78, 506
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	30, 329
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	54, 171, 255, 297, 438, 495
SspMI	CTAG	4 cut(s)	150, 158, 251, 464
SstI	GAGCTC	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	85, 204, 384
TaqI	TCGA	1 cut(s)	404
TasI	AATT	6 cut(s)	54, 171, 255, 297, 438, 495
TfiI	GAWTC	2 cut(s)	153, 374
Tru1I	TTAA	2 cut(s)	285, 354
Tru9I	TTAA	2 cut(s)	285, 354
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	297
XbaI	TCTAGA	2 cut(s)	149, 463
XceI	RCATGY	2 cut(s)	100, 476
XspI	CTAG	4 cut(s)	150, 158, 251, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.