Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

721291 .. 723784

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGATTTCCACAGTCTTCCTCGAAGAGATCTTCAATTTTTCTGTAAGAGGAACAAAATCCCAGCCAATATGACCAATATTGCCATGGCCGATGCTCTCAGAGATCTTGAGATTGTGGAAGGTATGGATGAGTTCATGGATCCATCTCGTGACCAGTCTCCAACCAGTGTTGCAAGAAATTTGCCAAGTGCTGCTCGAACTGCTGCTAGAACAACTCGAAGGAAGTCCACCAAGGATGAAACTCAGTCATCAGAATTGGTGACCCGTTCTTGTTATGTGGTGAGCAAGTCCTTAGCTGGAGAAATGGATCAAGAAAACAAGGACATGAATATGCTCCAGAATCCATCAGTACCTCAGAGCCGTGCTGTGAAGTTAGATGTCAATGATATCATGCCTGAAGCCAATGTGAGCAAAACTCCAGCGGCTAGAAGCACAAGAAGGGCTCAGGCCGCTGCGTCTTCCAAGAAGGATGAGTCGGTTCAGCGGGTTTACAGTACCAGAAGGTCTGTCAGATTGTTAGAAGAATCCATGGCTGACCTGAGTTTGAAAACCAATGTACCTGTAAAGAAGCACGAAGATTCTCCAGCAGGTTCCAAATTCCAGGCAAAGTCAGATGAGAACTCAGAAAATACTGACAAGGGTGGAGTAATGTCAGGGAGAGATTTAAATGATTCCTTGGAGAAGGAATGGGATGGCTCAAAGAATGATCCAGATCTTGATATATTATATGGTGATCTTGGTGATATCACTTTCTTTGATGCATCCACCAGTAAGGAACATCTGAATAGAACAGATTCCAGCACGGTTTCAGCTTCAGATAGTTTTGTTCTAGTCAATGAACATGAAACTTCGCAGGAGGATGGTTTTGTTGTTGTAGACCATGCTACTTCTACTACCACCACAAACACTTTGGCCTGCAACAAAGAATCAGAGCCTGAGCAAATGAAGATTGATTCTGAATCTGAATCAGAGGAAACAGAATATGAGACTGATCCATGGGAGGGTGATGATTTTGGTGTTGCTGTTCACACAAACCAAGAGGCATTTGAGTCTAAAGTCTCAGCTAGTGATAATGTGAGTAAGGTTGACTCAGTGGCAACTGTTCTGATAGCTGATGAATCGAAAGAACTCGATTTTTCTTCTTCACCTCTTGCTGTGGAGGAACTCGAAGAAGACAGCGATGAATGGTCTGATTATGAGATAGGCGAGGTCGAGTTGGAGGAAAACAGCTGCGGGTCTGAAGAATCCATTGAAATTGAATCAGAAGAGGCTCCTGTTTCAGATAAGAAGACTCCAGCTTCTTCCTCTTCATCAAGTCTTGCTGGTAATGAGACAAGAACTTCGTTGTCTCCATTTGAAGCAGAATCAATCTTAGAGAGCGAGGAGGACAAGGAGATGGCTGTTAACAACAATGGAGAGGGGAAAGCTGAGGCCGAGGTTAAGAAGACAAAGAAGAAGAAGACGATTGATGAAGAGCTCAAAGATGTGAGCATGAGGCAACTAACGAAGATGGTGAAAGAACTTGCTATCAAGAGTAAGCAACAACACAAGGGTCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

520

Amino Acids

57.43

Weight (kDa)

4.56

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	876
AciI	CCGC	4 cut(s)	422, 450, 484, 1233
AclWI	GGATC	5 cut(s)	134, 147, 315, 701, 986
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	178, 596
AcuI	CTGAAG	3 cut(s)	417, 798, 1260
AfaI	GTAC	3 cut(s)	351, 496, 558
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AgsI	TTSAA	5 cut(s)	35, 547, 1253, 1259, 1358
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	8 cut(s)	296, 812, 1064, 1112, 1230, 1298, 1427, 1477
AluI	AGCT	8 cut(s)	296, 812, 1064, 1112, 1230, 1298, 1427, 1477
Alw21I	GWGCWC	1 cut(s)	1479
Alw26I	GTCTC	5 cut(s)	162, 980, 1063, 1325, 1353
AlwI	GGATC	5 cut(s)	134, 147, 315, 701, 986
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	87, 447, 912, 1431
ApeKI	GCWGC	4 cut(s)	191, 203, 452, 1230
ApoI	RAATTY	2 cut(s)	178, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	1324, 1356
Asp700I	GAANNNNTTC	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	1553
AsuHPI	GGTGA	7 cut(s)	271, 292, 743, 752, 1016, 1137, 1525
AvaII	GGWCC	1 cut(s)	1553
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	2 cut(s)	445, 1479
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	6 cut(s)	8, 450, 1179, 1295, 1451, 1466
Bbv12I	GWGCWC	1 cut(s)	1479
BbvCI	CCTCAGC	1 cut(s)	1428
BbvI	GCAGC	4 cut(s)	178, 190, 439, 1217
BccI	CCATC	6 cut(s)	151, 352, 686, 854, 1390, 1504
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	602
BcoDI	GTCTC	5 cut(s)	162, 980, 1063, 1325, 1353
BfaI	CTAG	4 cut(s)	207, 426, 830, 1065
BfuAI	ACCTGC	1 cut(s)	578
BglII	AGATCT	3 cut(s)	28, 103, 712
BisI	GCNGC	6 cut(s)	192, 204, 423, 450, 453, 1231
BlsI	GCNGC	6 cut(s)	193, 205, 424, 451, 454, 1232
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	1553
BmgT120I	GGNCC	1 cut(s)	1553
BmiI	GGNNCC	4 cut(s)	141, 592, 1272, 1554
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	3 cut(s)	82, 748, 770
BpiI	GAAGAC	6 cut(s)	8, 450, 1179, 1295, 1451, 1466
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpmI	CTGGAG	5 cut(s)	318, 320, 402, 567, 1278
Bpu10I	CCTNAGC	4 cut(s)	292, 444, 936, 1428
BpuEI	CTTGAG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	6 cut(s)	84, 231, 528, 675, 995, 1434
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse1I	ACTGG	3 cut(s)	154, 165, 768
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	6 cut(s)	84, 231, 528, 675, 995, 1434
BseGI	GGATG	6 cut(s)	133, 241, 475, 697, 761, 865
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseNI	ACTGG	3 cut(s)	154, 165, 768
BseRI	GAGGAG	1 cut(s)	1397
BseXI	GCAGC	4 cut(s)	178, 190, 439, 1217
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	4 cut(s)	89, 449, 914, 1433
BsiHKAI	GWGCWC	1 cut(s)	1479
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	5 cut(s)	162, 980, 1063, 1325, 1353
BsnI	GGCC	4 cut(s)	89, 449, 914, 1433
Bsp1286I	GDGCHC	2 cut(s)	445, 1479
Bsp143I	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
Bsp19I	CCATGG	3 cut(s)	84, 528, 995
BspACI	CCGC	4 cut(s)	422, 450, 484, 1233
BspANI	GGCC	4 cut(s)	89, 449, 914, 1433
BspLI	GGNNCC	4 cut(s)	141, 592, 1272, 1554
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	5 cut(s)	134, 147, 315, 701, 986
BspQI	GCTCTTC	1 cut(s)	1467
BsrI	ACTGG	3 cut(s)	154, 165, 768
BssECI	CCNNGG	6 cut(s)	84, 231, 528, 675, 995, 1434
BssMI	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	5 cut(s)	84, 231, 528, 675, 995
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	4 cut(s)	14, 494, 805, 1102
Bst6I	CTCTTC	4 cut(s)	19, 1260, 1312, 1467
BstC8I	GCNNGC	1 cut(s)	916
BstDSI	CCRYGG	3 cut(s)	84, 528, 995
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	6 cut(s)	133, 241, 475, 697, 761, 865
BstKTI	GATC	8 cut(s)	31, 106, 142, 310, 709, 715, 736, 994
BstMAI	GTCTC	5 cut(s)	162, 980, 1063, 1325, 1353
BstMBI	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 449
BstNI	CCWGG	1 cut(s)	602
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	178, 190, 439, 1217
BstV2I	GAAGAC	6 cut(s)	8, 450, 1179, 1295, 1451, 1466
BstX2I	RGATCY	4 cut(s)	28, 103, 139, 712
BstYI	RGATCY	4 cut(s)	28, 103, 139, 712
BsuRI	GGCC	4 cut(s)	89, 449, 914, 1433
BtgI	CCRYGG	3 cut(s)	84, 528, 995
BtgZI	GCGATG	1 cut(s)	1194
BtsCI	GGATG	6 cut(s)	133, 241, 475, 697, 761, 865
BtsIMutI	CAGTG	2 cut(s)	172, 1098
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	1 cut(s)	916
CaiI	CAGNNNCTG	1 cut(s)	935
Cfr13I	GGNCC	1 cut(s)	1553
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	350, 495, 557
CviAII	CATG	9 cut(s)	85, 136, 325, 391, 529, 842, 881, 996, 1492
CviQI	GTAC	3 cut(s)	350, 495, 557
DpnI	GATC	8 cut(s)	30, 105, 141, 309, 708, 714, 735, 993
DpnII	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	19, 1260, 1312, 1467
EarI	CTCTTC	4 cut(s)	19, 1260, 1312, 1467
Ecl136II	GAGCTC	1 cut(s)	1477
Eco130I	CCWWGG	5 cut(s)	84, 231, 528, 675, 995
Eco24I	GRGCYC	2 cut(s)	445, 1479
Eco32I	GATATC	2 cut(s)	388, 745
Eco47I	GGWCC	1 cut(s)	1553
Eco53kI	GAGCTC	1 cut(s)	1477
Eco57I	CTGAAG	3 cut(s)	417, 798, 1260
Eco91I	GGTNACC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	1477
EcoO109I	RGGNCCY	1 cut(s)	1553
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	2 cut(s)	388, 745
EcoT14I	CCWWGG	5 cut(s)	84, 231, 528, 675, 995
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	2 cut(s)	445, 1479
ErhI	CCWWGG	5 cut(s)	84, 231, 528, 675, 995
FaeI	CATG	9 cut(s)	88, 139, 328, 394, 532, 845, 884, 999, 1495
FatI	CATG	9 cut(s)	84, 135, 324, 390, 528, 841, 880, 995, 1491
FauI	CCCGC	2 cut(s)	477, 1226
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	6 cut(s)	192, 204, 423, 450, 453, 1231
FokI	GGATG	6 cut(s)	140, 248, 482, 704, 748, 872
FriOI	GRGCYC	2 cut(s)	445, 1479
Fsp4HI	GCNGC	6 cut(s)	192, 204, 423, 450, 453, 1231
FspBI	CTAG	4 cut(s)	207, 426, 830, 1065
GluI	GCNGC	6 cut(s)	192, 204, 423, 450, 453, 1231
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	5 cut(s)	318, 320, 402, 567, 1278
HaeIII	GGCC	4 cut(s)	89, 449, 914, 1433
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	9 cut(s)	88, 139, 328, 394, 532, 845, 884, 999, 1495
HincII	GTYRAC	2 cut(s)	1087, 1405
HindII	GTYRAC	2 cut(s)	1087, 1405
HpaI	GTTAAC	1 cut(s)	1405
HphI	GGTGA	7 cut(s)	271, 292, 743, 752, 1016, 1137, 1525
Hpy166II	GTNNAC	6 cut(s)	228, 490, 877, 1027, 1087, 1405
Hpy188III	TCNNGA	8 cut(s)	107, 149, 311, 337, 710, 716, 1531, 1556
Hpy8I	GTNNAC	6 cut(s)	228, 490, 877, 1027, 1087, 1405
HpyAV	CCTTC	6 cut(s)	113, 213, 432, 460, 495, 676
HpyCH4III	ACNGT	4 cut(s)	14, 494, 805, 1102
HpyCH4V	TGCA	3 cut(s)	173, 761, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 449
Hsp92II	CATG	9 cut(s)	88, 139, 328, 394, 532, 845, 884, 999, 1495
KspAI	GTTAAC	1 cut(s)	1405
Kzo9I	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
LguI	GCTCTTC	1 cut(s)	1467
LmnI	GCTCC	2 cut(s)	339, 1276
Lsp1109I	GCAGC	4 cut(s)	178, 190, 439, 1217
LweI	GCATC	3 cut(s)	82, 748, 770
MaeI	CTAG	4 cut(s)	207, 426, 830, 1065
MaeIII	GTNAC	2 cut(s)	149, 259
MalI	GATC	8 cut(s)	30, 105, 141, 309, 708, 714, 735, 993
MboI	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
MflI	RGATCY	4 cut(s)	28, 103, 139, 712
MhlI	GDGCHC	2 cut(s)	445, 1479
MluCI	AATT	5 cut(s)	35, 178, 254, 596, 1254
MlyI	GAGTC	4 cut(s)	482, 1058, 1082, 1285
MmeI	TCCRAC	2 cut(s)	185, 1197
Mph1103I	ATGCAT	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	3 cut(s)	665, 1404, 1440
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	4 cut(s)	422, 452, 484, 1230
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	200, 449
NcoI	CCATGG	3 cut(s)	84, 528, 995
NdeII	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
NlaIII	CATG	9 cut(s)	88, 139, 328, 394, 532, 845, 884, 999, 1495
NlaIV	GGNNCC	4 cut(s)	141, 592, 1272, 1554
NmeAIII	GCCGAG	1 cut(s)	1459
NmuCI	GTSAC	2 cut(s)	149, 259
NsiI	ATGCAT	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	1467
PdmI	GAANNNNTTC	1 cut(s)	793
PkrI	GCNGC	6 cut(s)	193, 205, 424, 451, 454, 1232
PleI	GAGTC	4 cut(s)	481, 1057, 1082, 1285
PpsI	GAGTC	4 cut(s)	481, 1057, 1082, 1285
PpuMI	RGGWCCY	1 cut(s)	1553
Psp124BI	GAGCTC	1 cut(s)	1479
Psp5II	RGGWCCY	1 cut(s)	1553
Psp6I	CCWGG	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	141, 592, 1272, 1554
PspPI	GGNCC	1 cut(s)	1553
PspPPI	RGGWCCY	1 cut(s)	1553
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	4 cut(s)	28, 103, 139, 712
PvuII	CAGCTG	1 cut(s)	1230
RsaI	GTAC	3 cut(s)	351, 496, 558
RsaNI	GTAC	3 cut(s)	350, 495, 557
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	1479
SapI	GCTCTTC	1 cut(s)	1467
SaqAI	TTAA	3 cut(s)	665, 1404, 1440
SatI	GCNGC	6 cut(s)	192, 204, 423, 450, 453, 1231
Sau3AI	GATC	8 cut(s)	28, 103, 139, 307, 706, 712, 733, 991
Sau96I	GGNCC	1 cut(s)	1553
SchI	GAGTC	4 cut(s)	482, 1058, 1082, 1285
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	445, 1479
SfaNI	GCATC	3 cut(s)	82, 748, 770
SinI	GGWCC	1 cut(s)	1553
SmiI	ATTTAAAT	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	35, 178, 254, 596, 1254
SsiI	CCGC	4 cut(s)	422, 450, 484, 1233
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	4 cut(s)	207, 426, 830, 1065
SstI	GAGCTC	1 cut(s)	1479
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	5 cut(s)	84, 231, 528, 675, 995
SwaI	ATTTAAAT	1 cut(s)	666
TaaI	ACNGT	4 cut(s)	14, 494, 805, 1102
TaqI	TCGA	7 cut(s)	22, 196, 217, 1121, 1131, 1167, 1212
TasI	AATT	5 cut(s)	35, 178, 254, 596, 1254
TauI	GCSGC	2 cut(s)	425, 452
Tru1I	TTAA	3 cut(s)	665, 1404, 1440
Tru9I	TTAA	3 cut(s)	665, 1404, 1440
TscAI	CASTG	2 cut(s)	172, 1098
TseFI	GTSAC	2 cut(s)	149, 259
TseI	GCWGC	4 cut(s)	191, 203, 452, 1230
Tsp45I	GTSAC	2 cut(s)	149, 259
TspRI	CASTG	2 cut(s)	172, 1098
VpaK11BI	GGWCC	1 cut(s)	1553
XapI	RAATTY	2 cut(s)	178, 596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	82, 907
XmiI	GTMKAC	1 cut(s)	876
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	4 cut(s)	207, 426, 830, 1065
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.