Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

7993502 .. 7994687

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATAAGGGACACATTCCAATTCCTACTAAGAAACTCCTGGCAATGCTTGAGAGCTCAGTTGCTAAGGTATCAGAGGGAAACTCAAATGGAATTGATGCTTCGGAAGTGTTGTCGGAGCTAAAATCAAATGGACAAGTTATAGATGAAAGTCTGGTGAAAGATAACAAGATGGATGTGACAGAAGTACAGAAAGATGGTCCAATGCAGGAATCAGGAATGGAATCTGAGTTGTCTGCACCAAAGGCAGCTTCAGATGCTAATATGAATTCAGAGGTTATGGATGAATCTAGTGAAGAGAGCTCAGCTGATGATAAGGAACCTCATTGTGAAGGAGCACAGGATATGGTCAAAGATTTTGATGATCTTATTGCTGCTCAATCTGCACAGCCACAAGAGGCTACGAGTCTAAGGCAGCTGAAGAAACTGCTGAAAAGTAAACTGAAGATTGAGGACAGCAAGGACACAAAGGTGGTAGAGAAGACCAGAGCACTGAGCGAAGTACCAGAGAACCAAATGGACGTCAAGGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.38

Weight (kDa)

4.52

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	3 cut(s)	237, 440, 464
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	2 cut(s)	189, 504
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	6 cut(s)	57, 121, 251, 303, 308, 418
AluI	AGCT	6 cut(s)	57, 121, 251, 303, 308, 418
Alw21I	GWGCWC	4 cut(s)	59, 305, 340, 493
ApeKI	GCWGC	3 cut(s)	248, 374, 415
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	59, 305
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	4 cut(s)	59, 305, 340, 493
BbvI	GCAGC	3 cut(s)	260, 361, 427
BccI	CCATC	2 cut(s)	166, 191
BciT130I	CCWGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	249, 375, 416
BlpI	GCTNAGC	1 cut(s)	304
BlsI	GCNGC	3 cut(s)	250, 376, 417
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	88, 247
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	181, 289
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	4 cut(s)	72, 219, 318, 485
BseXI	GCAGC	3 cut(s)	260, 361, 427
BsgI	GTGCAG	2 cut(s)	222, 369
BsiHKAI	GWGCWC	4 cut(s)	59, 305, 340, 493
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
Bsp1286I	GDGCHC	4 cut(s)	59, 305, 340, 493
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	304
BspCNI	CTCAG	4 cut(s)	71, 220, 317, 486
BspLI	GGNNCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	51
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	522
BstDEI	CTNAG	7 cut(s)	30, 58, 66, 228, 304, 410, 494
BstF5I	GGATG	2 cut(s)	181, 289
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 257, 383
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	260, 361, 427
BstV2I	GAAGAC	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	181, 289
BtsIMutI	CAGTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	188, 503
CviJI	RGCY	8 cut(s)	57, 121, 251, 303, 308, 391, 401, 418
CviKI_1	RGCY	8 cut(s)	57, 121, 251, 303, 308, 391, 401, 418
CviQI	GTAC	2 cut(s)	188, 503
DdeI	CTNAG	7 cut(s)	30, 58, 66, 228, 304, 410, 494
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	2 cut(s)	57, 303
Eco24I	GRGCYC	2 cut(s)	59, 305
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	2 cut(s)	57, 303
Eco57I	CTGAAG	3 cut(s)	237, 440, 464
EcoICRI	GAGCTC	2 cut(s)	57, 303
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	59, 305
FaiI	YATR	4 cut(s)	143, 266, 281, 347
FaqI	GGGAC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	249, 375, 416
FokI	GGATG	2 cut(s)	188, 296
FriOI	GRGCYC	2 cut(s)	59, 305
Fsp4HI	GCNGC	3 cut(s)	249, 375, 416
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	3 cut(s)	249, 375, 416
Hin1I	GRCGYC	1 cut(s)	522
HinfI	GANTC	4 cut(s)	212, 224, 287, 406
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	6 cut(s)	76, 106, 118, 229, 256, 274
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	208, 239, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 257, 383
HpyF3I	CTNAG	7 cut(s)	30, 58, 66, 228, 304, 410, 494
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	118, 335
LpnPI	CCDG	8 cut(s)	26, 53, 140, 194, 201, 326, 499, 519
Lsp1109I	GCAGC	3 cut(s)	260, 361, 427
LweI	GCATC	2 cut(s)	88, 247
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	308, 433, 457, 493
MhlI	GDGCHC	4 cut(s)	59, 305, 340, 493
MluCI	AATT	3 cut(s)	21, 93, 268
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	70, 268, 333, 391, 445
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	308, 418
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	245, 257, 383
NdeII	GATC	1 cut(s)	364
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	470
PfeI	GAWTC	3 cut(s)	212, 224, 287
PkrI	GCNGC	3 cut(s)	250, 376, 417
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Psp124BI	GAGCTC	2 cut(s)	59, 305
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	200
PvuII	CAGCTG	2 cut(s)	308, 418
RsaI	GTAC	2 cut(s)	189, 504
RsaNI	GTAC	2 cut(s)	188, 503
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	2 cut(s)	59, 305
SatI	GCNGC	3 cut(s)	249, 375, 416
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	4 cut(s)	59, 305, 340, 493
SfaNI	GCATC	2 cut(s)	88, 247
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	21, 93, 268
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	2 cut(s)	59, 305
StyD4I	CCNGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	525
TasI	AATT	3 cut(s)	21, 93, 268
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	212, 224, 287
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	248, 374, 415
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	162, 281, 300
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.