RLG00000013940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002478
Physical Location & Seq
Forward (+)
44525698 .. 44526127
430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013940

Sequence Viewer

Length: 336 bp
ATGTTACTGCTGTTCAATCTGCGTTGCCCACAAGAAATAAATGAACCCTCGAGTGCTGTGAAAACTGTTGAGCCCATTTCATCGACTCTGAGTTCGACTCCTACTGAGAGCCCGGCAAGCAAGAATTCTGATGTGAATGTGGCTGCCACTGATGAGGGCACTGAAGATGAGGCAGTGGCTGAAGCTTTTTATGAGCTTCAGGATAACATGAATGCTATCATGGAAGCAAGTGAGGAAGAAGATTCTGAGGATGAGAGCTCTGAAGCTTCATCTGAGCTTTGGGATAACATGAATGATATCAGGGAAGCAAATGAAGAGCAAGCCTGTTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.14

Weight (kDa)

4.05

Isoelectric Point (pI)

83.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 4 cut(s) 182, 183, 201, 282
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 5 cut(s) 185, 196, 258, 266, 277
AluI AGCT 5 cut(s) 185, 196, 258, 266, 277
Alw21I GWGCWC 1 cut(s) 260
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 161
BanII GRGCYC 3 cut(s) 75, 113, 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 113
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpuMI CCSGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 4 cut(s) 80, 96, 237, 264
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 1 cut(s) 113
BsmI GAATGC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 4 cut(s) 75, 113, 161, 260
BspCNI CTCAG 4 cut(s) 81, 97, 238, 265
BspQI GCTCTTC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 118, 321
BstDEI CTNAG 4 cut(s) 89, 105, 246, 273
BstF5I GGATG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 147, 159, 180
Cac8I GCNNGC 2 cut(s) 118, 321
CaiI CAGNNNCTG 1 cut(s) 179
CviAII CATG 3 cut(s) 208, 220, 289
DdeI CTNAG 4 cut(s) 89, 105, 246, 273
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 3 cut(s) 75, 113, 260
Eco32I GATATC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 4 cut(s) 182, 183, 201, 282
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 3 cut(s) 75, 113, 260
FaeI CATG 3 cut(s) 211, 223, 292
FaiI YATR 4 cut(s) 192, 209, 221, 290
FatI CATG 3 cut(s) 207, 219, 288
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 3 cut(s) 75, 113, 260
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HapII CCGG 1 cut(s) 113
Hin1II CATG 3 cut(s) 211, 223, 292
HindIII AAGCTT 2 cut(s) 183, 264
HinfI GANTC 3 cut(s) 85, 97, 242
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 6 cut(s) 90, 130, 247, 262, 274, 335
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 4 cut(s) 89, 105, 246, 273
Hsp92II CATG 3 cut(s) 211, 223, 292
LguI GCTCTTC 1 cut(s) 309
LpnPI CCDG 3 cut(s) 126, 185, 286
Lsp1109I GCAGC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 4 cut(s) 176, 248, 251, 326
MhlI GDGCHC 4 cut(s) 75, 113, 161, 260
MluCI AATT 1 cut(s) 124
MlyI GAGTC 2 cut(s) 79, 91
MnlI CCTC 5 cut(s) 58, 148, 163, 226, 241
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 113
NlaIII CATG 3 cut(s) 211, 223, 292
PaeR7I CTCGAG 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 79, 91
PpsI GAGTC 2 cut(s) 79, 91
Psp124BI GAGCTC 1 cut(s) 260
PspXI VCTCGAGB 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 309
SatI GCNGC 1 cut(s) 144
SchI GAGTC 2 cut(s) 79, 91
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 4 cut(s) 75, 113, 161, 260
SetI ASST 5 cut(s) 187, 198, 260, 268, 279
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 124
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 50, 83, 95
TasI AATT 1 cut(s) 124
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 3 cut(s) 154, 166, 180
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 6 cut(s) 57, 69, 224, 258, 305, 327
TspRI CASTG 3 cut(s) 154, 166, 180
XapI RAATTY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.