Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002148.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

26698 .. 28979

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002148.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggtgaggcccaaccgctacttgcatcttgtagccctatgttcaagctacgctacgctttcaaatagtgaagctcatccggggtatcaagatgaagtggaaatcaagtttttgaggactacatttgggaagggctatactatacagaccaatgtttgcatcagaggaagtggaaatggaaaaattattgtgagagagatgaagttacttttgtggatctgtatgctgaaagtatcagagggaagctcaaatagaattgatgcttctgaagtttcatcggagctaaaatcaaatggacaagttgtggatggaagtctgttcaaagatagcaagatgaatttgactgagatgcagatagatgaacctcattgtgaaggagcacaagatttgatagttgccaaagattgtaattatgctactactattcaatctgcgttgcgacataaagtaaacgaatcactaagtgctatgaaaattgttgagcctatttcattgactttgagttcaactcccactaagagactggcaagcaagagttctgatgtgaatgtggctgccactgtaatagagcctaaagaagattcaaggctgaggcattgggataacatgaatgatatcatggaagcaagtgaagaagaagattctgaggatgagagctctgaagatagtcggttgatgaagcttcatttgagcttcaggataacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.25

Weight (kDa)

5.33

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	3 cut(s)	288, 679, 681
AdeI	CACNNNGTG	1 cut(s)	464
AgsI	TTSAA	6 cut(s)	45, 63, 322, 428, 507, 585
AluBI	AGCT	7 cut(s)	48, 74, 246, 283, 657, 682, 693
AluI	AGCT	7 cut(s)	48, 74, 246, 283, 657, 682, 693
Alw21I	GWGCWC	2 cut(s)	382, 659
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	382, 659
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	4 cut(s)	34, 168, 250, 339
BplI	GAGNNNNNCTC	4 cut(s)	230, 262, 493, 525
Bpu10I	CCTNAGC	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	76, 313, 655
BseMII	CTCAG	3 cut(s)	336, 581, 636
BseNI	ACTGG	1 cut(s)	528
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	382, 659
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	382, 659
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	3 cut(s)	337, 582, 637
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	5 cut(s)	345, 461, 516, 590, 645
BstF5I	GGATG	3 cut(s)	76, 313, 655
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	76, 313, 655
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	3 cut(s)	607, 619, 705
DdeI	CTNAG	5 cut(s)	345, 461, 516, 590, 645
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	657
Eco57I	CTGAAG	3 cut(s)	288, 679, 681
EcoICRI	GAGCTC	1 cut(s)	657
EcoRV	GATATC	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	659
FaeI	CATG	3 cut(s)	610, 622, 708
FatI	CATG	3 cut(s)	606, 618, 704
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	3 cut(s)	63, 320, 662
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	3 cut(s)	610, 622, 708
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	3 cut(s)	455, 581, 641
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	7 cut(s)	164, 238, 268, 280, 541, 646, 661
Hpy188III	TCNNGA	2 cut(s)	89, 697
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	124, 368
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4V	TGCA	3 cut(s)	25, 159, 352
HpyF3I	CTNAG	5 cut(s)	345, 461, 516, 590, 645
Hsp92II	CATG	3 cut(s)	610, 622, 708
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	280, 377
LpnPI	CCDG	3 cut(s)	93, 509, 682
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	4 cut(s)	34, 168, 250, 339
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	5 cut(s)	590, 644, 647, 650, 674
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	382, 659
MluCI	AATT	5 cut(s)	183, 255, 337, 409, 474
MnlI	CCTC	6 cut(s)	108, 158, 232, 375, 585, 640
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	81
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	610, 622, 708
PfeI	GAWTC	3 cut(s)	455, 581, 641
PkrI	GCNGC	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	659
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	382, 659
SetI	ASST	8 cut(s)	50, 76, 248, 285, 367, 659, 684, 695
SfaNI	GCATC	4 cut(s)	34, 168, 250, 339
Sse9I	AATT	5 cut(s)	183, 255, 337, 409, 474
SsiI	CCGC	1 cut(s)	16
SstI	GAGCTC	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	562
TasI	AATT	5 cut(s)	183, 255, 337, 409, 474
TfiI	GAWTC	3 cut(s)	455, 581, 641
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	1 cut(s)	554
TspRI	CASTG	1 cut(s)	565
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.