pycom01g24220

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
21201926 .. 21204536
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24220.4

Sequence Viewer

Length: 1758 bp
ATGGATTTCTCCACCCTTTCAAGAAGAGTGCTCCGCACTCTCTGCAAGAGGAACAAACTCCCAGCCAACCTCACCAATGTCGCCATGGCTGATTCTCTCAAGAATCTCGAACTCGTGGAAGGAATTGAAGACTTGCTGAATCAATCTCCGCAGAAAACAATGAATGGTTCATTAAGTATCCCTCGTACTGCTGGAAGAACCTCTGTTCGAAGAAAGACGATCATTGAAGAGCCAGAAAGCTCACAGACATTGACCCGCAGTCACCGTGGGACAAGGCGAGCAGTTGCTGAAGAGGTGATGGACCAGGAAAAGACTGAGGTGGTGCCTAGGACTCCTGCTGCACCAAGCACCCGGAGAAGGGCTCCTGCCACTTCAGCTTGCAAGAAGATGGAAACCCAGAAGGAGACAGCTTCGGTGCAGAAGAGCGTGTATAACACTAGGCGATCCGTGAGGCTGCTGGAAAAGACCATGGCTAGCTTGAGCTTGGGGTATGAAAACACTATGCCTCTTAAGATGAATGAACTTTCCACAGAAATGAACAATGATTCCGAGAAGACTGATGATGGCTTAGTTGATGAGGGGTCTAGTATGCAGACAGTCTCGGAGACGAGCTCAGAGAGAGTTGATGTTTCTGAAGTTTCACTGGAGAATGAAGGGCAGTTGAAGGGTGATGTGGAGGAAAATAGCAAGGCTGATGTGATTGAAGTAGATGATATCGAGCAAAAATCTGAACCGGAATCTGAGGTATGTGAATCAAAGTCAGCCTCAGATGACATTGTGGTTTCAGAAGTTATGGATGCAGCAGATGACAAGAAACCGAATGATGAAGGAACCGAAAACTGTTTGGCTGCTAAAGTTTCTGATGATGTTTCTGCTGAGGACATGGACCATTTTATTGCTGCTGAGAACCCGGAAGATGATATCACTTCGGTGGAGGATCAAAATCTTGAGAATGACGATTCTAACTCGAAATCTGCTGCTGGGGAGACTGAAGAAGTTAAGGATGTGGCTAATGTAGAAGAAGCTGCTAAGCCTAAGGCATTGACTCTGAGCTTGTCTGGTGAACAGCAGCCTATGCTTGGTGGCAAGGAATCAATGTATGAGGTGCCAGAGGCTGATTATAACGAGAAATTCGATTTTGAATCAGACTCTATCAAGGACGGAAGTTCTGGATCAGACTTCACTGAAGGAGAATTTAGTGAAGATGAAGCCACGGATGAAAACTCAGTTGAGTGTGAGGAATTTGAATCTTCGGAAGGAGAAGAATTTGGTGATGAAAGTTTGGTTGATGCTAATAATGTGACTGCAGTAGCAGAAGTTGTCACCAGGGCAAAGATGCAAGAGATCAATAACTCTGAAGTTGATGTTTGTGCAAAAAGCGATCCAGCTTTGGACAAAGCTCCAATATTGGCACCCTTTGAAGCTGAGCAGCTTTCACTTCAGTTTCCCCGTCCAACTTTCTCAAAACCCGGGAAGTCTGCAAGCAAGAAGCGATTGGAAGTCATGAGCTACATCTTTGACGACAATGAGGAGAACATTGATGATGGCACTGACAATGGAGGAGTTGAGATCAAGAGAGACGCGGATGCCACTGACAAGGATAGTGTGGCGAGCGAATTGGAGGCTAAGAGTCTAAGGCAGCTAAGGAAAATGCTCAAAAGTCAATTAAAGATCAAGACAGAAGATAAGATGCTAGAGAAGCCAAGAACTGCATTGCAGGAAGTACCAGAGAACCAAATGGTAGGCGGTGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

586

Amino Acids

64.27

Weight (kDa)

4.4

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AccB1I GGYRCC 3 cut(s) 322, 1105, 1411
AccII CGCG 1 cut(s) 1583
AciI CCGC 5 cut(s) 34, 149, 256, 1583, 1746
AclWI GGATC 4 cut(s) 438, 945, 1180, 1376
AcsI RAATTY 4 cut(s) 1130, 1193, 1241, 1265
AcuI CTGAAG 7 cut(s) 309, 357, 654, 1011, 1206, 1377, 1424
AfaI GTAC 2 cut(s) 187, 1725
AfiI CCNNNNNNNGG 3 cut(s) 357, 358, 1079
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 8 cut(s) 21, 128, 227, 664, 704, 1142, 1247, 1421
AhdI GACNNNNNGTC 1 cut(s) 258
AjnI CCWGG 2 cut(s) 303, 1325
AleI CACNNNNGTG 1 cut(s) 929
AloI GAACNNNNNNTCC 2 cut(s) 530, 562
Alw21I GWGCWC 2 cut(s) 33, 614
Alw26I GTCTC 5 cut(s) 398, 599, 604, 980, 1572
AlwI GGATC 4 cut(s) 438, 945, 1180, 1376
AlwNI CAGNNNCTG 2 cut(s) 287, 1115
Ama87I CYCGRG 1 cut(s) 1469
ApoI RAATTY 4 cut(s) 1130, 1193, 1241, 1265
AspA2I CCTAGG 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 301, 886
AsuC2I CCSGG 4 cut(s) 352, 911, 1470, 1471
AsuHPI GGTGA 7 cut(s) 64, 254, 307, 680, 1073, 1283, 1315
AsuII TTCGAA 1 cut(s) 208
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 1469
AvaII GGWCC 2 cut(s) 301, 886
AvrII CCTAGG 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 1035
BanI GGYRCC 3 cut(s) 322, 1105, 1411
BanII GRGCYC 2 cut(s) 364, 614
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 135, 560
Bbv12I GWGCWC 2 cut(s) 33, 614
BbvCI CCTCAGC 1 cut(s) 876
BccI CCATC 4 cut(s) 292, 382, 557, 1538
BciT130I CCWGG 2 cut(s) 305, 1327
BciVI GTATCC 1 cut(s) 188
BcnI CCSGG 4 cut(s) 352, 911, 1470, 1471
BcoDI GTCTC 5 cut(s) 398, 599, 604, 980, 1572
BfaI CTAG 5 cut(s) 327, 438, 474, 585, 1694
BfmI CTRYAG 1 cut(s) 1305
BfrI CTTAAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 188
BlnI CCTAGG 1 cut(s) 326
BlpI GCTNAGC 2 cut(s) 1029, 1425
Bme1390I CCNGG 6 cut(s) 305, 352, 911, 1327, 1470, 1471
Bme18I GGWCC 2 cut(s) 301, 886
BmeRI GACNNNNNGTC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 1469
BmgT120I GGNCC 2 cut(s) 301, 886
BmiI GGNNCC 5 cut(s) 324, 363, 832, 1107, 1413
BmrFI CCNGG 6 cut(s) 305, 352, 911, 1327, 1470, 1471
BmsI GCATC 5 cut(s) 787, 1279, 1326, 1576, 1680
BmtI GCTAGC 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 135, 560
BplI GAGNNNNNCTC 4 cut(s) 346, 378, 596, 628
BpmI CTGGAG 1 cut(s) 665
Bpu10I CCTNAGC 2 cut(s) 876, 1643
Bpu1102I GCTNAGC 2 cut(s) 1029, 1425
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 3 cut(s) 83, 499, 968
BpuMI CCSGG 4 cut(s) 352, 911, 1470, 1471
BsaBI GATNNNNATC 1 cut(s) 942
BsaJI CCNNGG 7 cut(s) 84, 265, 326, 468, 1212, 1326, 1469
BsaWI WCCGGW 1 cut(s) 733
Bsc4I CCNNNNNNNGG 3 cut(s) 357, 358, 1079
Bse1I ACTGG 1 cut(s) 648
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 1712
Bse8I GATNNNNATC 1 cut(s) 942
BseBI CCWGG 2 cut(s) 305, 1327
BseDI CCNNGG 7 cut(s) 84, 265, 326, 468, 1212, 1326, 1469
BseGI GGATG 4 cut(s) 802, 1009, 1222, 1591
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 3 cut(s) 357, 358, 1079
BseMI GCAATG 1 cut(s) 1712
BseMII CTCAG 9 cut(s) 306, 627, 732, 780, 867, 894, 1040, 1239, 1416
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 1544, 1575
BseYI CCCAGC 2 cut(s) 61, 980
BsgI GTGCAG 2 cut(s) 324, 437
Bsh1236I CGCG 1 cut(s) 1583
BshNI GGYRCC 3 cut(s) 322, 1105, 1411
BsiHKAI GWGCWC 2 cut(s) 33, 614
BsiHKCI CYCGRG 1 cut(s) 1469
BsiSI CCGG 4 cut(s) 352, 734, 911, 1470
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 357, 358, 1079
BsmAI GTCTC 5 cut(s) 398, 599, 604, 980, 1572
BsmBI CGTCTC 2 cut(s) 599, 1572
BsmFI GGGAC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 1469
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 3 cut(s) 33, 364, 614
Bsp143I GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
Bsp1720I GCTNAGC 2 cut(s) 1029, 1425
Bsp19I CCATGG 2 cut(s) 84, 468
BspACI CCGC 5 cut(s) 34, 149, 256, 1583, 1746
BspCNI CTCAG 9 cut(s) 307, 626, 733, 779, 868, 895, 1041, 1238, 1417
BspFNI CGCG 1 cut(s) 1583
BspHI TCATGA 1 cut(s) 1503
BspLI GGNNCC 5 cut(s) 324, 363, 832, 1107, 1413
BspMAI CTGCAG 1 cut(s) 1309
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 4 cut(s) 438, 945, 1180, 1376
BspQI GCTCTTC 2 cut(s) 222, 416
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 3 cut(s) 322, 1105, 1411
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 1712
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 7 cut(s) 84, 265, 326, 468, 1212, 1326, 1469
BssMI GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 3 cut(s) 84, 326, 468
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 305, 1327
Bst4CI ACNGT 3 cut(s) 266, 598, 842
Bst6I CTCTTC 4 cut(s) 19, 222, 285, 416
BstAFI CTTAAG 1 cut(s) 509
BstAPI GCANNNNNTGC 2 cut(s) 42, 1075
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 5 cut(s) 279, 379, 475, 1483, 1612
BstDSI CCRYGG 4 cut(s) 84, 265, 468, 1212
BstF5I GGATG 4 cut(s) 802, 1009, 1222, 1591
BstFNI CGCG 1 cut(s) 1583
BstKTI GATC 8 cut(s) 222, 446, 940, 1175, 1347, 1384, 1572, 1674
BstMAI GTCTC 5 cut(s) 398, 599, 604, 980, 1572
BstMBI GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
BstMWI GCNNNNNNNGC 4 cut(s) 42, 374, 1075, 1699
BstNI CCWGG 2 cut(s) 305, 1327
BstSCI CCNGG 6 cut(s) 303, 350, 909, 1325, 1468, 1469
BstSFI CTRYAG 1 cut(s) 1305
BstUI CGCG 1 cut(s) 1583
BstV2I GAAGAC 2 cut(s) 135, 560
Bsu36I CCTNAGG 1 cut(s) 1035
BsuI GTATCC 1 cut(s) 188
BtgI CCRYGG 4 cut(s) 84, 265, 468, 1212
BtsCI GGATG 4 cut(s) 802, 1009, 1222, 1591
BtsIMutI CAGTG 4 cut(s) 641, 1182, 1548, 1590
Cac8I GCNNGC 5 cut(s) 279, 379, 475, 1483, 1612
CaiI CAGNNNCTG 2 cut(s) 287, 1115
CciI TCATGA 1 cut(s) 1503
Cfr13I GGNCC 2 cut(s) 301, 886
Cfr9I CCCGGG 1 cut(s) 1469
CseI GACGC 1 cut(s) 1589
Csp6I GTAC 2 cut(s) 186, 1724
CviAII CATG 4 cut(s) 85, 469, 883, 1504
CviQI GTAC 2 cut(s) 186, 1724
DpnI GATC 8 cut(s) 221, 445, 939, 1174, 1346, 1383, 1571, 1673
DpnII GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
DriI GACNNNNNGTC 1 cut(s) 258
Eam1104I CTCTTC 4 cut(s) 19, 222, 285, 416
Eam1105I GACNNNNNGTC 1 cut(s) 258
EarI CTCTTC 4 cut(s) 19, 222, 285, 416
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 3 cut(s) 84, 326, 468
Eco24I GRGCYC 2 cut(s) 364, 614
Eco32I GATATC 2 cut(s) 715, 922
Eco47I GGWCC 2 cut(s) 301, 886
Eco53kI GAGCTC 1 cut(s) 612
Eco57I CTGAAG 7 cut(s) 309, 357, 654, 1011, 1206, 1377, 1424
Eco81I CCTNAGG 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 1469
EcoICRI GAGCTC 1 cut(s) 612
EcoRII CCWGG 2 cut(s) 303, 1325
EcoRV GATATC 2 cut(s) 715, 922
EcoT14I CCWWGG 3 cut(s) 84, 326, 468
EcoT38I GRGCYC 2 cut(s) 364, 614
ErhI CCWWGG 3 cut(s) 84, 326, 468
Esp3I CGTCTC 2 cut(s) 599, 1572
FaeI CATG 4 cut(s) 88, 472, 886, 1507
FaqI GGGAC 1 cut(s) 283
FatI CATG 4 cut(s) 84, 468, 882, 1503
FauI CCCGC 1 cut(s) 263
FokI GGATG 4 cut(s) 809, 1016, 1229, 1598
FriOI GRGCYC 2 cut(s) 364, 614
FspBI CTAG 5 cut(s) 327, 438, 474, 585, 1694
GsaI CCCAGC 2 cut(s) 65, 984
GsuI CTGGAG 1 cut(s) 665
HapII CCGG 4 cut(s) 352, 734, 911, 1470
HgaI GACGC 1 cut(s) 1589
Hin1II CATG 4 cut(s) 88, 472, 886, 1507
HpaII CCGG 4 cut(s) 352, 734, 911, 1470
HphI GGTGA 7 cut(s) 64, 254, 307, 680, 1073, 1283, 1315
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188III TCNNGA 8 cut(s) 21, 100, 107, 947, 1170, 1504, 1573, 1675
Hpy8I GTNNAC 1 cut(s) 1064
HpyAV CCTTC 8 cut(s) 113, 351, 394, 647, 658, 821, 1181, 1250
HpyCH4III ACNGT 3 cut(s) 266, 598, 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 374, 1075, 1699
Hsp92II CATG 4 cut(s) 88, 472, 886, 1507
Kzo9I GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
LguI GCTCTTC 2 cut(s) 222, 416
LmnI GCTCC 3 cut(s) 36, 367, 1405
LweI GCATC 5 cut(s) 787, 1279, 1326, 1576, 1680
MaeI CTAG 5 cut(s) 327, 438, 474, 585, 1694
MaeIII GTNAC 3 cut(s) 260, 1300, 1321
MalI GATC 8 cut(s) 221, 445, 939, 1174, 1346, 1383, 1571, 1673
MboI GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
MhlI GDGCHC 3 cut(s) 33, 364, 614
MluCI AATT 7 cut(s) 123, 1130, 1193, 1241, 1265, 1616, 1664
MlyI GAGTC 4 cut(s) 325, 1039, 1142, 1639
MmeI TCCRAC 1 cut(s) 1478
MseI TTAA 4 cut(s) 173, 510, 999, 1667
MslI CAYNNNNRTG 2 cut(s) 533, 929
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 4 cut(s) 352, 734, 911, 1470
MspR9I CCNGG 6 cut(s) 305, 352, 911, 1327, 1470, 1471
MvaI CCWGG 2 cut(s) 305, 1327
MvnI CGCG 1 cut(s) 1583
MwoI GCNNNNNNNGC 4 cut(s) 42, 374, 1075, 1699
NciI CCSGG 4 cut(s) 352, 911, 1470, 1471
NcoI CCATGG 2 cut(s) 84, 468
NdeII GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 4 cut(s) 88, 472, 886, 1507
NlaIV GGNNCC 5 cut(s) 324, 363, 832, 1107, 1413
NmuCI GTSAC 3 cut(s) 260, 1300, 1321
NspV TTCGAA 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 929
PagI TCATGA 1 cut(s) 1503
PciSI GCTCTTC 2 cut(s) 222, 416
PcsI WCGNNNNNNNCGW 1 cut(s) 1131
PleI GAGTC 4 cut(s) 325, 1039, 1142, 1638
PpsI GAGTC 4 cut(s) 325, 1039, 1142, 1638
PsiI TTATAA 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 303, 1325
PspFI CCCAGC 2 cut(s) 61, 980
PspGI CCWGG 2 cut(s) 303, 1325
PspN4I GGNNCC 5 cut(s) 324, 363, 832, 1107, 1413
PspPI GGNCC 2 cut(s) 301, 886
PstI CTGCAG 1 cut(s) 1309
PstNI CAGNNNCTG 2 cut(s) 287, 1115
RsaI GTAC 2 cut(s) 187, 1725
RsaNI GTAC 2 cut(s) 186, 1724
RseI CAYNNNNRTG 2 cut(s) 533, 929
SacI GAGCTC 1 cut(s) 614
SapI GCTCTTC 2 cut(s) 222, 416
SaqAI TTAA 4 cut(s) 173, 510, 999, 1667
Sau3AI GATC 8 cut(s) 219, 443, 937, 1172, 1344, 1381, 1569, 1671
Sau96I GGNCC 2 cut(s) 301, 886
SchI GAGTC 4 cut(s) 325, 1039, 1142, 1639
ScrFI CCNGG 6 cut(s) 305, 352, 911, 1327, 1470, 1471
SduI GDGCHC 3 cut(s) 33, 364, 614
SfaNI GCATC 5 cut(s) 787, 1279, 1326, 1576, 1680
SfcI CTRYAG 1 cut(s) 1305
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 2 cut(s) 301, 886
SmaI CCCGGG 1 cut(s) 1471
SmiMI CAYNNNNRTG 2 cut(s) 533, 929
SmlI CTYRAG 4 cut(s) 98, 478, 509, 947
SmoI CTYRAG 4 cut(s) 98, 478, 509, 947
Sse9I AATT 7 cut(s) 123, 1130, 1193, 1241, 1265, 1616, 1664
SsiI CCGC 5 cut(s) 34, 149, 256, 1583, 1746
SspI AATATT 1 cut(s) 1407
SspMI CTAG 5 cut(s) 327, 438, 474, 585, 1694
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 6 cut(s) 303, 350, 909, 1325, 1468, 1469
StyI CCWWGG 3 cut(s) 84, 326, 468
TaaI ACNGT 3 cut(s) 266, 598, 842
TaqI TCGA 5 cut(s) 108, 208, 717, 968, 1134
TasI AATT 7 cut(s) 123, 1130, 1193, 1241, 1265, 1616, 1664
Tru1I TTAA 4 cut(s) 173, 510, 999, 1667
Tru9I TTAA 4 cut(s) 173, 510, 999, 1667
TscAI CASTG 4 cut(s) 648, 1189, 1555, 1597
TseFI GTSAC 3 cut(s) 260, 1300, 1321
Tsp45I GTSAC 3 cut(s) 260, 1300, 1321
TspGWI ACGGA 3 cut(s) 436, 1176, 1229
TspMI CCCGGG 1 cut(s) 1469
TspRI CASTG 4 cut(s) 648, 1189, 1555, 1597
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 301, 886
XapI RAATTY 4 cut(s) 1130, 1193, 1241, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmaI CCCGGG 1 cut(s) 1469
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 5 cut(s) 327, 438, 474, 585, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.