Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

159677 .. 160822

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggatttccacaccctcaccaggaaggcgctccaggctctgtgcaagcagaatggaatcccagctaacatcaccaatgtcgccatggccgattctctctctgctcttcaacatgttgaaggacttgaagagttgttgaaccaatctccagagaaagttatgattggatcagcaagtgtctctcgtactgcggctagaaccaccactcggagaaaggctgtgaatgaagagccagagagctcacagccattgactcgcaccactaggcgtgctgtgacgaagaagactgttgctgaagaggtggaccaggaaaagacacaggttccacctaagactcctgctgcaccaagcaccaggaggagggctccagcggcttcagcttgccagaagacagagaccctaactgaaacaacttctgtgcagcgcccttatagcacccggcgatcagtaaggttgttggggaagaccatggcgaacatgagcctggataaggataacactatgacttctagcattgatgaactttctgcagataccatggattgctcagagcaatctgagagctcagttgttaagggtaagtccggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.28

Weight (kDa)

9.24

Isoelectric Point (pI)

67.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 371
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	315, 360
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	4 cut(s)	21, 207, 360, 490
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	110, 119, 128, 139
AjnI	CCWGG	5 cut(s)	20, 33, 306, 353, 483
AluBI	AGCT	4 cut(s)	65, 240, 380, 564
AluI	AGCT	4 cut(s)	65, 240, 380, 564
Alw21I	GWGCWC	2 cut(s)	242, 566
Alw26I	GTCTC	2 cut(s)	184, 389
AlwI	GGATC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	341, 421
AspLEI	GCGC	2 cut(s)	31, 426
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	2 cut(s)	10, 64
AvaII	GGWCC	1 cut(s)	304
BanII	GRGCYC	3 cut(s)	242, 367, 566
BbsI	GAAGAC	3 cut(s)	290, 395, 470
Bbv12I	GWGCWC	2 cut(s)	242, 566
BbvI	GCAGC	2 cut(s)	328, 433
BciT130I	CCWGG	5 cut(s)	22, 35, 308, 355, 485
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	184, 389
BfaI	CTAG	3 cut(s)	195, 264, 510
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	2 cut(s)	32, 427
BisI	GCNGC	4 cut(s)	192, 342, 372, 422
BlsI	GCNGC	4 cut(s)	193, 343, 373, 423
Bme1390I	CCNGG	6 cut(s)	22, 35, 308, 355, 439, 485
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	324, 366
BmrFI	CCNGG	6 cut(s)	22, 35, 308, 355, 439, 485
BpiI	GAAGAC	3 cut(s)	290, 395, 470
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	3 cut(s)	17, 132, 351
BpuMI	CCSGG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	84, 468, 537
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 207, 360, 490
BseBI	CCWGG	5 cut(s)	22, 35, 308, 355, 485
BseDI	CCNNGG	3 cut(s)	84, 468, 537
BseLI	CCNNNNNNNGG	4 cut(s)	21, 207, 360, 490
BseMII	CTCAG	3 cut(s)	549, 561, 579
BseRI	GAGGAG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	328, 433
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	2 cut(s)	327, 440
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	242, 566
BsiSI	CCGG	2 cut(s)	439, 585
BslI	CCNNNNNNNGG	4 cut(s)	21, 207, 360, 490
BsmAI	GTCTC	2 cut(s)	184, 389
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	242, 367, 566
Bsp143I	GATC	2 cut(s)	167, 443
Bsp19I	CCATGG	3 cut(s)	84, 468, 537
BspACI	CCGC	2 cut(s)	191, 371
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	550, 560, 578
BspLI	GGNNCC	2 cut(s)	324, 366
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	2 cut(s)	111, 222
BspTNI	GGTCTC	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	84, 468, 537
BssMI	GATC	2 cut(s)	167, 443
BssT1I	CCWWGG	3 cut(s)	84, 468, 537
Bst2UI	CCWGG	5 cut(s)	22, 35, 308, 355, 485
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	4 cut(s)	111, 123, 222, 291
BstC8I	GCNNGC	3 cut(s)	47, 270, 382
BstDEI	CTNAG	4 cut(s)	330, 547, 558, 565
BstDSI	CCRYGG	3 cut(s)	84, 468, 537
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstH2I	RGCGCY	2 cut(s)	32, 427
BstHHI	GCGC	2 cut(s)	31, 426
BstKTI	GATC	2 cut(s)	170, 446
BstMAI	GTCTC	2 cut(s)	184, 389
BstMBI	GATC	2 cut(s)	167, 443
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 371, 377, 432
BstNI	CCWGG	5 cut(s)	22, 35, 308, 355, 485
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	6 cut(s)	20, 33, 306, 353, 437, 483
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	328, 433
BstV2I	GAAGAC	3 cut(s)	290, 395, 470
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	3 cut(s)	84, 468, 537
Cac8I	GCNNGC	3 cut(s)	47, 270, 382
CaiI	CAGNNNCTG	1 cut(s)	40
CfoI	GCGC	2 cut(s)	31, 426
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	5 cut(s)	85, 113, 469, 478, 538
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	4 cut(s)	330, 547, 558, 565
DpnI	GATC	2 cut(s)	169, 445
DpnII	GATC	2 cut(s)	167, 443
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	111, 123, 222, 291
EarI	CTCTTC	4 cut(s)	111, 123, 222, 291
Ecl136II	GAGCTC	2 cut(s)	240, 564
Eco130I	CCWWGG	3 cut(s)	84, 468, 537
Eco24I	GRGCYC	3 cut(s)	242, 367, 566
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	2 cut(s)	240, 564
Eco57I	CTGAAG	2 cut(s)	315, 360
EcoICRI	GAGCTC	2 cut(s)	240, 564
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoRII	CCWGG	5 cut(s)	20, 33, 306, 353, 483
EcoT14I	CCWWGG	3 cut(s)	84, 468, 537
EcoT38I	GRGCYC	3 cut(s)	242, 367, 566
ErhI	CCWWGG	3 cut(s)	84, 468, 537
FaeI	CATG	5 cut(s)	88, 116, 472, 481, 541
FaiI	YATR	8 cut(s)	86, 114, 161, 432, 470, 479, 503, 539
FatI	CATG	5 cut(s)	84, 112, 468, 477, 537
Fnu4HI	GCNGC	4 cut(s)	192, 342, 372, 422
FriOI	GRGCYC	3 cut(s)	242, 367, 566
Fsp4HI	GCNGC	4 cut(s)	192, 342, 372, 422
FspBI	CTAG	3 cut(s)	195, 264, 510
GlaI	GCGC	2 cut(s)	30, 425
GluI	GCNGC	4 cut(s)	192, 342, 372, 422
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	3 cut(s)	17, 132, 351
HaeII	RGCGCY	2 cut(s)	32, 427
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	439, 585
HhaI	GCGC	2 cut(s)	31, 426
Hin1II	CATG	5 cut(s)	88, 116, 472, 481, 541
Hin6I	GCGC	2 cut(s)	29, 424
HinP1I	GCGC	2 cut(s)	29, 424
HinfI	GANTC	4 cut(s)	57, 92, 253, 334
HpaII	CCGG	2 cut(s)	439, 585
HphI	GGTGA	2 cut(s)	10, 64
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	210, 550, 559
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	19, 113
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	45, 344, 421, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 371, 377, 432
HpyF3I	CTNAG	4 cut(s)	330, 547, 558, 565
Hsp92II	CATG	5 cut(s)	88, 116, 472, 481, 541
HspAI	GCGC	2 cut(s)	29, 424
Kzo9I	GATC	2 cut(s)	167, 443
LguI	GCTCTTC	2 cut(s)	111, 222
LmnI	GCTCC	2 cut(s)	36, 370
Lsp1109I	GCAGC	2 cut(s)	328, 433
MaeI	CTAG	3 cut(s)	195, 264, 510
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	169, 445
MboI	GATC	2 cut(s)	167, 443
MboII	GAAGA	8 cut(s)	98, 140, 239, 292, 295, 308, 400, 475
MhlI	GDGCHC	3 cut(s)	242, 367, 566
MlyI	GAGTC	2 cut(s)	247, 328
MnlI	CCTC	4 cut(s)	26, 292, 351, 354
MseI	TTAA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	439, 585
MspR9I	CCNGG	6 cut(s)	22, 35, 308, 355, 439, 485
MvaI	CCWGG	5 cut(s)	22, 35, 308, 355, 485
MwoI	GCNNNNNNNGC	4 cut(s)	35, 371, 377, 432
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	3 cut(s)	84, 468, 537
NdeII	GATC	2 cut(s)	167, 443
NlaIII	CATG	5 cut(s)	88, 116, 472, 481, 541
NlaIV	GGNNCC	2 cut(s)	324, 366
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	116
PciI	ACATGT	1 cut(s)	112
PciSI	GCTCTTC	2 cut(s)	111, 222
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	57, 92
PkrI	GCNGC	4 cut(s)	193, 343, 373, 423
PleI	GAGTC	2 cut(s)	247, 328
PpsI	GAGTC	2 cut(s)	247, 328
PscI	ACATGT	1 cut(s)	112
Psp124BI	GAGCTC	2 cut(s)	242, 566
Psp6I	CCWGG	5 cut(s)	20, 33, 306, 353, 483
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	5 cut(s)	20, 33, 306, 353, 483
PspN4I	GGNNCC	2 cut(s)	324, 366
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacI	GAGCTC	2 cut(s)	242, 566
SapI	GCTCTTC	2 cut(s)	111, 222
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	4 cut(s)	192, 342, 372, 422
Sau3AI	GATC	2 cut(s)	167, 443
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	247, 328
ScrFI	CCNGG	6 cut(s)	22, 35, 308, 355, 439, 485
SduI	GDGCHC	3 cut(s)	242, 367, 566
SetI	ASST	8 cut(s)	67, 242, 303, 324, 331, 382, 455, 566
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	304
SsiI	CCGC	2 cut(s)	191, 371
SspMI	CTAG	3 cut(s)	195, 264, 510
SstI	GAGCTC	2 cut(s)	242, 566
StyD4I	CCNGG	6 cut(s)	20, 33, 306, 353, 437, 483
StyI	CCWWGG	3 cut(s)	84, 468, 537
TaaI	ACNGT	1 cut(s)	289
TauI	GCSGC	2 cut(s)	194, 374
TfiI	GAWTC	2 cut(s)	57, 92
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	341, 421
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	240, 534
VpaK11BI	GGWCC	1 cut(s)	304
XagI	CCTNNNNNAGG	1 cut(s)	488
XceI	RCATGY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	3 cut(s)	195, 264, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.