Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Forward (+)

5551344 .. 5552219

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGTTGCATAACGCAAGGTATTTCAAACCTGCCTCAATTACTGAAAACACTTTCATATCCTCACTTCGCTCACCTTTAGCCGCATCTCATTGTGAAGGAGCACAAGATTTGGTCAAAGATTCCGATGATGTTTTTGCTGCTCAATCTGCACTGCCACAAGAAGTAAACGAACCACCAAGTGCTGTGAAAACTGTTGAGCTCATTTCATTGACTCTCAGTTCCACTCCCACTAAGAGCCCGGCAAGCAAAATTTCTGATGTGAATGTGGCTGCCACCACAATAGAGCCTGAAGAAGCTCCCAAGACTGAGGCATTGGGTGATTACAATGGAAAATTTGATTTTGAATCAGGTTCCAGCACAGAAGGAGATTCTGAGGATGAGGGCACTGAAGATGAGTCGGTGGATGAAGCTTCTTCTGAACTTCAGGATAACATGAATGATATCAGGGAAGCAAGTGAAGAAGAAGATTCCGATGATGAAAGCACTAAAGGAGAATCTAGTGAAGAGGAAGAGTATGATGATGACATCACAGAAGAAGAATCTAGTGAGGATGAGGCTGTTGCTGATAAATCAGAAAAGCCAAGTGCTCAGAAGAGCTTGATTGTTGAAAATGCTGATGCTAATATGAGTGAAGCAGTTGTAGTTGCCAAGGAAGACAGCTTTACCATGATGAATCAAACATCCTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

24.84

Weight (kDa)

4.05

Isoelectric Point (pI)

71.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	252, 335
AcuI	CTGAAG	3 cut(s)	312, 410, 411
AdeI	CACNNNGTG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	28, 347, 611
AluBI	AGCT	5 cut(s)	202, 299, 413, 600, 663
AluI	AGCT	5 cut(s)	202, 299, 413, 600, 663
Alw21I	GWGCWC	3 cut(s)	106, 204, 592
ApeKI	GCWGC	2 cut(s)	140, 272
ApoI	RAATTY	2 cut(s)	252, 335
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	66, 332, 681
BaeGI	GKGCMC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	204, 242
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	3 cut(s)	106, 204, 592
BbvI	GCAGC	2 cut(s)	127, 259
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	501, 546, 694
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	84, 141, 273
BlsI	GCNGC	3 cut(s)	85, 142, 274
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	95, 610
BpiI	GAAGAC	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	4 cut(s)	385, 412, 559, 683
BseMII	CTCAG	4 cut(s)	232, 300, 366, 605
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	127, 259
BsgI	GTGCAG	1 cut(s)	135
BsiHKAI	GWGCWC	3 cut(s)	106, 204, 592
BsiSI	CCGG	1 cut(s)	242
Bsp1286I	GDGCHC	5 cut(s)	106, 204, 242, 389, 592
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	4 cut(s)	231, 301, 367, 604
BspLI	GGNNCC	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	3 cut(s)	501, 507, 590
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	5 cut(s)	218, 234, 309, 375, 591
BstF5I	GGATG	4 cut(s)	385, 412, 559, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 246
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	127, 259
BstV2I	GAAGAC	1 cut(s)	663
BtsCI	GGATG	4 cut(s)	385, 412, 559, 683
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	152, 387
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	247
CviAII	CATG	2 cut(s)	436, 670
DdeI	CTNAG	5 cut(s)	218, 234, 309, 375, 591
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	3 cut(s)	501, 507, 590
EarI	CTCTTC	3 cut(s)	501, 507, 590
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	204, 242
Eco32I	GATATC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	312, 410, 411
EcoICRI	GAGCTC	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	204, 242
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	2 cut(s)	439, 673
FaiI	YATR	6 cut(s)	12, 59, 437, 519, 629, 671
FatI	CATG	2 cut(s)	435, 669
Fnu4HI	GCNGC	3 cut(s)	84, 141, 273
FokI	GGATG	4 cut(s)	392, 419, 566, 670
FriOI	GRGCYC	2 cut(s)	204, 242
Fsp4HI	GCNGC	3 cut(s)	84, 141, 273
FspBI	CTAG	3 cut(s)	501, 546, 694
GluI	GCNGC	3 cut(s)	84, 141, 273
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	439, 673
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	9 cut(s)	122, 214, 347, 371, 398, 470, 497, 542, 676
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	66, 332, 681
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	7 cut(s)	127, 259, 376, 421, 475, 577, 594
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	92, 359
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	10, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 246
HpyF3I	CTNAG	5 cut(s)	218, 234, 309, 375, 591
Hsp92II	CATG	2 cut(s)	439, 673
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	2 cut(s)	101, 304
LpnPI	CCDG	7 cut(s)	45, 255, 303, 336, 370, 413, 433
Lsp1109I	GCAGC	2 cut(s)	127, 259
LweI	GCATC	2 cut(s)	95, 610
MaeI	CTAG	3 cut(s)	501, 546, 694
MhlI	GDGCHC	5 cut(s)	106, 204, 242, 389, 592
MluCI	AATT	3 cut(s)	39, 252, 335
MlyI	GAGTC	2 cut(s)	208, 407
MnlI	CCTC	8 cut(s)	46, 73, 304, 370, 376, 502, 544, 550
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	149, 246
NciI	CCSGG	1 cut(s)	242
NlaIII	CATG	2 cut(s)	439, 673
NlaIV	GGNNCC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	590
PfeI	GAWTC	7 cut(s)	122, 347, 371, 470, 497, 542, 676
PkrI	GCNGC	3 cut(s)	85, 142, 274
PleI	GAGTC	2 cut(s)	208, 406
PpsI	GAGTC	2 cut(s)	208, 406
Psp124BI	GAGCTC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	590
SatI	GCNGC	3 cut(s)	84, 141, 273
SchI	GAGTC	2 cut(s)	208, 407
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	5 cut(s)	106, 204, 242, 389, 592
SetI	ASST	9 cut(s)	23, 34, 79, 204, 301, 355, 415, 602, 665
SfaNI	GCATC	2 cut(s)	95, 610
Sse9I	AATT	3 cut(s)	39, 252, 335
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	501, 546, 694
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	3 cut(s)	39, 252, 335
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	7 cut(s)	122, 347, 371, 470, 497, 542, 676
TscAI	CASTG	2 cut(s)	159, 394
TseI	GCWGC	2 cut(s)	140, 272
TspDTI	ATGAA	6 cut(s)	46, 198, 423, 452, 495, 689
TspRI	CASTG	2 cut(s)	159, 394
XapI	RAATTY	2 cut(s)	252, 335
XspI	CTAG	3 cut(s)	501, 546, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.