Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028224.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 833

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028224.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

ccaagcaccaggaggagggctccagcggcttcagcttgccagaagacagagaccctaactgaaacaacttctgtgcagcgcccttatagcacccggcgatcagtaaggttgttggggaagaccatggcgaacatgagcctggataaggataacactatgacttctagcattgatgaactttctgcagataccatggattgctcagagcaatctgagagctcagttgttaagggatctgacatgcaaacagtgtcagaggggacgtcaaatggacttgatgcttctgaagtctcctcgaagctaaaatcaaatggacaagttgtggatgaaagtctgttgaaagagagcaggatgaatgtgactgaagatggttcaatgcagaaatcaggagtggaatctgagatgtctgcaccaaagtcagcttcagatgtcattatgatttcagaggttatgggtgaatctaatgaagagagctcagctgaggataagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.45

Weight (kDa)

4.57

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	4 cut(s)	15, 306, 384, 408
AcyI	GRCGYC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	15, 145
AgsI	TTSAA	2 cut(s)	340, 375
AjnI	CCWGG	2 cut(s)	8, 138
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	6 cut(s)	35, 219, 301, 422, 474, 479
AluI	AGCT	6 cut(s)	35, 219, 301, 422, 474, 479
Alw21I	GWGCWC	2 cut(s)	221, 476
Alw26I	GTCTC	2 cut(s)	44, 295
AlwI	GGATC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	467
BanII	GRGCYC	3 cut(s)	22, 221, 476
BbsI	GAAGAC	2 cut(s)	50, 125
Bbv12I	GWGCWC	2 cut(s)	221, 476
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	10, 140
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	44, 295
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	2 cut(s)	27, 77
BlpI	GCTNAGC	1 cut(s)	475
BlsI	GCNGC	2 cut(s)	28, 78
Bme1390I	CCNGG	3 cut(s)	10, 94, 140
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	3 cut(s)	10, 94, 140
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	2 cut(s)	50, 125
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	123, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 145
BseBI	CCWGG	2 cut(s)	10, 140
BseDI	CCNNGG	2 cut(s)	123, 192
BseGI	GGATG	2 cut(s)	331, 357
BseLI	CCNNNNNNNGG	2 cut(s)	15, 145
BseMII	CTCAG	6 cut(s)	204, 216, 234, 390, 471, 489
BseRI	GAGGAG	2 cut(s)	28, 283
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	2 cut(s)	95, 393
BsiHKAI	GWGCWC	2 cut(s)	221, 476
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	15, 145
BsmAI	GTCTC	2 cut(s)	44, 295
BsmFI	GGGAC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	3 cut(s)	22, 221, 476
Bsp143I	GATC	2 cut(s)	98, 233
Bsp1720I	GCTNAGC	1 cut(s)	475
Bsp19I	CCATGG	2 cut(s)	123, 192
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	6 cut(s)	205, 215, 233, 391, 472, 488
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	123, 192
BssMI	GATC	2 cut(s)	98, 233
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	123, 192
Bst2UI	CCWGG	2 cut(s)	10, 140
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	6 cut(s)	202, 213, 220, 399, 475, 480
BstDSI	CCRYGG	2 cut(s)	123, 192
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	331, 357
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	101, 236
BstMAI	GTCTC	2 cut(s)	44, 295
BstMBI	GATC	2 cut(s)	98, 233
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 32, 87
BstNI	CCWGG	2 cut(s)	10, 140
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	8, 92, 138
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	50, 125
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BtgI	CCRYGG	2 cut(s)	123, 192
BtsCI	GGATG	2 cut(s)	331, 357
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	81
CviAII	CATG	4 cut(s)	124, 133, 193, 241
CviJI	RGCY	9 cut(s)	20, 29, 35, 138, 219, 301, 422, 474, 479
CviKI_1	RGCY	9 cut(s)	20, 29, 35, 138, 219, 301, 422, 474, 479
DdeI	CTNAG	6 cut(s)	202, 213, 220, 399, 475, 480
DpnI	GATC	2 cut(s)	100, 235
DpnII	GATC	2 cut(s)	98, 233
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	2 cut(s)	219, 474
Eco130I	CCWWGG	2 cut(s)	123, 192
Eco24I	GRGCYC	3 cut(s)	22, 221, 476
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	2 cut(s)	219, 474
Eco57I	CTGAAG	4 cut(s)	15, 306, 384, 408
EcoICRI	GAGCTC	2 cut(s)	219, 474
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	8, 138
EcoT14I	CCWWGG	2 cut(s)	123, 192
EcoT38I	GRGCYC	3 cut(s)	22, 221, 476
ErhI	CCWWGG	2 cut(s)	123, 192
FaeI	CATG	4 cut(s)	127, 136, 196, 244
FaiI	YATR	8 cut(s)	87, 125, 134, 158, 194, 242, 437, 452
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	4 cut(s)	123, 132, 192, 240
Fnu4HI	GCNGC	2 cut(s)	27, 77
FokI	GGATG	2 cut(s)	338, 364
FriOI	GRGCYC	3 cut(s)	22, 221, 476
Fsp4HI	GCNGC	2 cut(s)	27, 77
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	27, 77
GsuI	CTGGAG	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	82
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	127, 136, 196, 244
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	395, 458
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	467
Hpy188I	TCNGA	8 cut(s)	205, 214, 238, 256, 286, 400, 427, 445
Hpy188III	TCNNGA	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	76, 185, 244, 379, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 32, 87
HpyF3I	CTNAG	6 cut(s)	202, 213, 220, 399, 475, 480
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	127, 136, 196, 244
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	98, 233
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	22, 36, 53, 107, 125, 152, 334, 372
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	100, 235
MboI	GATC	2 cut(s)	98, 233
MboII	GAAGA	4 cut(s)	55, 130, 377, 479
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	3 cut(s)	22, 221, 476
MnlI	CCTC	6 cut(s)	6, 9, 250, 304, 439, 475
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	26, 479
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	3 cut(s)	10, 94, 140
MvaI	CCWGG	2 cut(s)	10, 140
MwoI	GCNNNNNNNGC	3 cut(s)	26, 32, 87
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	123, 192
NdeII	GATC	2 cut(s)	98, 233
NlaIII	CATG	4 cut(s)	127, 136, 196, 244
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	395, 458
PkrI	GCNGC	2 cut(s)	28, 78
Psp124BI	GAGCTC	2 cut(s)	221, 476
Psp6I	CCWGG	2 cut(s)	8, 138
PspGI	CCWGG	2 cut(s)	8, 138
PspN4I	GGNNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	479
SacI	GAGCTC	2 cut(s)	221, 476
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	27, 77
Sau3AI	GATC	2 cut(s)	98, 233
ScrFI	CCNGG	3 cut(s)	10, 94, 140
SduI	GDGCHC	3 cut(s)	22, 221, 476
SetI	ASST	9 cut(s)	37, 110, 221, 266, 303, 424, 450, 476, 481
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	183
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	2 cut(s)	221, 476
StyD4I	CCNGG	3 cut(s)	8, 92, 138
StyI	CCWWGG	2 cut(s)	123, 192
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	296
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	395, 458
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	189, 342, 368, 480
TspRI	CASTG	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.