Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Forward (+)

52247185 .. 52250845

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAATATGATACCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATCTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGTACTGTTGAGCAGAAGGCAAAATGGATTTTCAACAAGCTGAAAGGAGATTATACACTATCAGAGGGGAGCTCAAATGGAATTGATGCTTCTGAAGTTTCGTCAGAGCTAACATCAAATGGACAAGTTGTGGATGAAAGTCTGTTCAAAGATAGCAAGATGGATGTGACTGAGAGGTTATGGATGGATCTGATGAAAAGATCTCAGCTGAGGATAAAGGAACCTCATTGTGAAGGAGCACAAGATTTGGTAGTTGCCAAAGATTCTAATTATGTTACTATTGTTCCATCTGCGTTGCCACATACACCCATTTCATTGACTCTGAGTTCAACTCCCTCTAGGAGACCGGCAAGCAAGAGTTTTGATGTGAATGTGGATAACATGAATGCGATCATGGAAGCAAGTGAAGAAGAAGATTCTGAGGATGAGAGCTCTGAAGATGAGTCTGTTGATGAAGCTTCATCTGAGCTTCAGGATAACATGAATGATATCAGGAAACAAATGGAGAGGAAGGCTGTTACCTCTGAGAGTGAGACAGTATATTGTGTTTGTGTAGCCTACTTAGAATTTACATTTTTGAAATGTGTCAATATGCACCGACATGTCTTTTGGATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.72

Weight (kDa)

4.57

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	309, 734
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	3 cut(s)	228, 569, 570
AfaI	GTAC	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	148, 262, 444, 694
AluBI	AGCT	7 cut(s)	154, 186, 223, 322, 546, 572, 583
AluI	AGCT	7 cut(s)	154, 186, 223, 322, 546, 572, 583
Alw21I	GWGCWC	3 cut(s)	188, 355, 548
Alw26I	GTCTC	2 cut(s)	451, 641
AlwI	GGATC	2 cut(s)	309, 734
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	1 cut(s)	705
BaeI	ACNNNNGTAYC	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	188, 548
Bbv12I	GWGCWC	3 cut(s)	188, 355, 548
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	3 cut(s)	268, 292, 409
BcoDI	GTCTC	2 cut(s)	451, 641
BfaI	CTAG	1 cut(s)	453
BglII	AGATCT	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	1 cut(s)	190
BplI	GAGNNNNNCTC	4 cut(s)	170, 202, 430, 462
Bpu10I	CCTNAGC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	451
Bse118I	RCCGGY	1 cut(s)	460
BseGI	GGATG	4 cut(s)	253, 283, 303, 544
BseMII	CTCAG	7 cut(s)	276, 314, 332, 428, 525, 570, 630
BsiHKAI	GWGCWC	3 cut(s)	188, 355, 548
BsiSI	CCGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	451, 641
BsmI	GAATGC	2 cut(s)	24, 505
Bso31I	GGTCTC	1 cut(s)	451
Bsp1286I	GDGCHC	3 cut(s)	188, 355, 548
Bsp143I	GATC	4 cut(s)	301, 314, 504, 726
BspCNI	CTCAG	7 cut(s)	277, 315, 331, 429, 526, 571, 631
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	309, 734
BspTNI	GGTCTC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	460
BssMI	GATC	4 cut(s)	301, 314, 504, 726
Bst4CI	ACNGT	2 cut(s)	121, 652
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	8 cut(s)	285, 318, 323, 437, 534, 579, 639, 676
BstF5I	GGATG	4 cut(s)	253, 283, 303, 544
BstKTI	GATC	4 cut(s)	304, 317, 507, 729
BstMAI	GTCTC	2 cut(s)	451, 641
BstMBI	GATC	4 cut(s)	301, 314, 504, 726
BstNSI	RCATGY	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	301, 314
BstYI	RGATCY	2 cut(s)	301, 314
BtsCI	GGATG	4 cut(s)	253, 283, 303, 544
Cac8I	GCNNGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	496, 508, 595, 716
CviJI	RGCY	9 cut(s)	154, 186, 223, 322, 546, 572, 583, 629, 671
CviKI_1	RGCY	9 cut(s)	154, 186, 223, 322, 546, 572, 583, 629, 671
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	8 cut(s)	285, 318, 323, 437, 534, 579, 639, 676
DpnI	GATC	4 cut(s)	303, 316, 506, 728
DpnII	GATC	4 cut(s)	301, 314, 504, 726
Ecl136II	GAGCTC	2 cut(s)	186, 546
Eco24I	GRGCYC	2 cut(s)	188, 548
Eco31I	GGTCTC	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	604
Eco53kI	GAGCTC	2 cut(s)	186, 546
Eco57I	CTGAAG	3 cut(s)	228, 569, 570
EcoICRI	GAGCTC	2 cut(s)	186, 546
EcoRV	GATATC	1 cut(s)	604
EcoT38I	GRGCYC	2 cut(s)	188, 548
FaeI	CATG	4 cut(s)	499, 511, 598, 719
FatI	CATG	4 cut(s)	495, 507, 594, 715
FokI	GGATG	4 cut(s)	260, 290, 310, 551
FriOI	GRGCYC	2 cut(s)	188, 548
FspBI	CTAG	1 cut(s)	453
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	4 cut(s)	499, 511, 598, 719
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	4 cut(s)	377, 433, 530, 557
HpaII	CCGG	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	587, 607
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	5 cut(s)	44, 79, 124, 341, 619
HpyCH4III	ACNGT	2 cut(s)	121, 652
HpyCH4V	TGCA	1 cut(s)	709
HpyF3I	CTNAG	8 cut(s)	285, 318, 323, 437, 534, 579, 639, 676
Hsp92II	CATG	4 cut(s)	499, 511, 598, 719
Kzo9I	GATC	4 cut(s)	301, 314, 504, 726
LmnI	GCTCC	2 cut(s)	183, 350
LpnPI	CCDG	3 cut(s)	474, 572, 592
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	280, 388, 631
MalI	GATC	4 cut(s)	303, 316, 506, 728
MboI	GATC	4 cut(s)	301, 314, 504, 726
MboII	GAAGA	4 cut(s)	533, 536, 539, 563
MflI	RGATCY	2 cut(s)	301, 314
MhlI	GDGCHC	3 cut(s)	188, 355, 548
MluCI	AATT	4 cut(s)	55, 195, 382, 680
MlyI	GAGTC	2 cut(s)	427, 566
MnlI	CCTC	8 cut(s)	172, 282, 318, 348, 460, 529, 615, 646
MslI	CAYNNNNRTG	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	461
Mva1269I	GAATGC	2 cut(s)	24, 505
NdeII	GATC	4 cut(s)	301, 314, 504, 726
NlaIII	CATG	4 cut(s)	499, 511, 598, 719
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	719
PciI	ACATGT	1 cut(s)	715
PctI	GAATGC	2 cut(s)	24, 505
PfeI	GAWTC	2 cut(s)	377, 530
PleI	GAGTC	2 cut(s)	427, 565
PpsI	GAGTC	2 cut(s)	427, 565
PscI	ACATGT	1 cut(s)	715
Psp124BI	GAGCTC	2 cut(s)	188, 548
PspN4I	GGNNCC	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	301, 314
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	714
SacI	GAGCTC	2 cut(s)	188, 548
Sau3AI	GATC	4 cut(s)	301, 314, 504, 726
SchI	GAGTC	2 cut(s)	427, 566
SduI	GDGCHC	3 cut(s)	188, 355, 548
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	4 cut(s)	55, 195, 382, 680
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	2 cut(s)	188, 548
TaaI	ACNGT	2 cut(s)	121, 652
TaqI	TCGA	1 cut(s)	729
TasI	AATT	4 cut(s)	55, 195, 382, 680
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	377, 530
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	8 cut(s)	17, 264, 323, 417, 512, 564, 582, 611
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	719
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.