Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232707.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 759

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

aacctcattgtgaaggagcacaagatttggtagttgccaaagattctgatcatgttgcggctgttcaatctgcgctgccacaagaagtaaacgaacctccaagtgctgtgaaaactgttgagcccatttcattgactctgagttcaactcctaccaagagccaggcaagcaagaggcctaatgtgaatgtggctaccactgtaatagagcctaaagaagctcccaaggctgaagcattgggtgaatacagtggaaaatttgattttgaatcaggttttagcacagaaggagattctgaggacgagggcactgaagatgaggcagtggctgaagcttcatatgagcttcaggataacatgaatgatatgagggaagcaaatgaagaggaagattctgattatgaaagcactgaaggagaatctagtgaagaggaagactctgatgatgacatcaccgaagaagaatctagtgaggatgaggctgttgctgataaaccagaaaagcaaagtgctcagaagagcttgattgttgaaaatgctgatgctaatatgagtgaagcagcagaagttgccaaggcagaagtctttgccacgatgactaagacatcctcacctttgccggtcaaccttgcaactcagtttcctcgtccaacttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.37

Weight (kDa)

4.05

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	6 cut(s)	251, 331, 332, 350, 431, 638
AgsI	TTSAA	4 cut(s)	67, 146, 268, 532
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	220, 334, 345, 521
AluI	AGCT	4 cut(s)	220, 334, 345, 521
Alw21I	GWGCWC	2 cut(s)	21, 513
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	75, 559
ApoI	RAATTY	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	253, 444, 602
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	21, 513
BbvI	GCAGC	2 cut(s)	62, 571
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	2 cut(s)	422, 467
BisI	GCNGC	3 cut(s)	59, 76, 560
BlsI	GCNGC	3 cut(s)	60, 77, 561
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	4 cut(s)	132, 164, 421, 453
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	224, 572
Bse118I	RCCGGY	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	224, 572
BseGI	GGATG	2 cut(s)	480, 604
BseJI	GATNNNNATC	1 cut(s)	47
BseMII	CTCAG	4 cut(s)	130, 287, 526, 649
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	62, 571
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	21, 513
BsiSI	CCGG	1 cut(s)	619
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	4 cut(s)	21, 125, 310, 513
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	4 cut(s)	131, 288, 525, 648
BspQI	GCTCTTC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	618
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	2 cut(s)	224, 572
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	224, 572
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	117, 201, 250
Bst6I	CTCTTC	3 cut(s)	377, 422, 511
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	5 cut(s)	139, 296, 512, 599, 635
BstF5I	GGATG	2 cut(s)	480, 604
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 226, 568
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	62, 571
BstV2I	GAAGAC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	480, 604
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	5 cut(s)	197, 255, 308, 329, 407
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	618
CviAII	CATG	2 cut(s)	52, 357
DdeI	CTNAG	5 cut(s)	139, 296, 512, 599, 635
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	377, 422, 511
EarI	CTCTTC	3 cut(s)	377, 422, 511
Eco130I	CCWWGG	2 cut(s)	224, 572
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	125
Eco57I	CTGAAG	6 cut(s)	251, 331, 332, 350, 431, 638
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	224, 572
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	224, 572
FaeI	CATG	2 cut(s)	55, 360
FaiI	YATR	7 cut(s)	53, 339, 341, 358, 367, 401, 550
FatI	CATG	2 cut(s)	51, 356
FauNDI	CATATG	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	59, 76, 560
FokI	GGATG	2 cut(s)	487, 591
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	59, 76, 560
FspBI	CTAG	2 cut(s)	422, 467
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	59, 76, 560
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	619
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	55, 360
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	8 cut(s)	43, 135, 268, 292, 391, 418, 436, 463
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	3 cut(s)	253, 444, 602
Hpy166II	GTNNAC	2 cut(s)	90, 624
Hpy188I	TCNGA	6 cut(s)	48, 140, 297, 396, 441, 515
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	90, 624
HpyAV	CCTTC	3 cut(s)	7, 280, 406
HpyCH4III	ACNGT	3 cut(s)	117, 201, 250
HpyCH4V	TGCA	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 226, 568
HpyF3I	CTNAG	5 cut(s)	139, 296, 512, 599, 635
Hsp92II	CATG	2 cut(s)	55, 360
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	16, 225
LpnPI	CCDG	6 cut(s)	148, 175, 257, 334, 509, 632
Lsp1109I	GCAGC	2 cut(s)	62, 571
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	422, 467
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	8 cut(s)	325, 394, 400, 439, 445, 469, 472, 528
MhlI	GDGCHC	4 cut(s)	21, 125, 310, 513
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	2 cut(s)	129, 430
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	167, 226, 568
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	55, 360
PceI	AGGCCT	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	511
PfeI	GAWTC	6 cut(s)	43, 268, 292, 391, 418, 463
PkrI	GCNGC	3 cut(s)	60, 77, 561
PleI	GAGTC	2 cut(s)	129, 430
PpsI	GAGTC	2 cut(s)	129, 430
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	511
SatI	GCNGC	3 cut(s)	59, 76, 560
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	129, 430
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	4 cut(s)	21, 125, 310, 513
SetI	ASST	9 cut(s)	6, 99, 222, 276, 336, 347, 523, 615, 629
SfaNI	GCATC	1 cut(s)	531
Sse9I	AATT	1 cut(s)	256
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	422, 467
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	224, 572
TaaI	ACNGT	3 cut(s)	117, 201, 250
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	6 cut(s)	43, 268, 292, 391, 418, 463
TscAI	CASTG	5 cut(s)	204, 255, 315, 329, 414
TseI	GCWGC	2 cut(s)	75, 559
TspDTI	ATGAA	5 cut(s)	119, 326, 373, 395, 416
TspRI	CASTG	5 cut(s)	204, 255, 315, 329, 414
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	2 cut(s)	422, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.