Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002321.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Reverse (-)

151515 .. 158320

Gene Structure 6806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002321.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atgttgcttgtccagagtccaagtcatttgttttacttgataaattactcgacccaagaaggaaacagtgcagttgggattgggacccagcagcaacagcagctcccacatttaaaaaagttgaggcttgttggaatgtacaagctgatgcatctagggcaggatgatgaggaggataactcacaatcagccccccgcatcccaaattttccgaacctgcaaattctattcgtgaatgcttgtgacagcttaaggaatctgagatcatccgcaatatccttaaacaatctaacaagcttggaagtaagtttttgcgatggattgaaatacttgataacttactccatggccaaaagtttaatgcaactcacaacactggaagtcaagaagtgcccaagactggtggagatagtgggaagcgatggagacgacgattcaagacatgagattacattcaggcggttgaaacatttgaaactttctattctgccaagactgcaacgcttttgctccggaaattgcattgctaaattccctatctttcatgctgatattttgtccgatctcccatataacaggtataacataccagagttggctaaaaaatacaaggtttatgctatagacttgctgggcttcggttggagtgaaaaagcactggttgaatatgatgccatgatttggaaagatcaagtagtggacttcttgaaggagatagtgaaagaaccaacagttttggttggaaatagcctaggaggttttactgctttggttgcagcagttggattgcctgagcaagtagttggtgttgcactattgaattcggcaggacagtttggaaatgcaaatagtgaacctgagaagtctgacgaggaaacagtcctacagaagttcaacataaagccactgaaggaagttttccagcgagtagtacttggatttttattctggcaagcaaagcagcctgctcgcattgaatccgttttaaagagtgtgtacaaaaatacctccaatgtggatgactatctggtggattccataacaatgccagcagctgaccccaatgccggagaagtctactacagtatctggtatgcagacagctcaagtggaattgatgcttctgaagtttcgtcggagctaaaatcaaatggacaagttgtggatgaaagtctattcaaagatagcaagatggatgtgactgaggtacaaatagatggttcaatgcaaaaatctcagctgaggataaaggaacctcattgtgaaggagcacaagatttggtagttgccaacgattctaattatgttactattgttcaatctgcgttgccacataaaggaagcgaatccccatgtgctgtgaaaactgttgagcccgtttcattgactctgagttcaactctcactaagagacaggcaagcaagagttcaaatgtgaatgtggctgccactgtaatagagcctaaagaagcttcaaggctgaggcattgggtgattaagatgggaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

503

Amino Acids

55.86

Weight (kDa)

5.93

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	1077
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	3 cut(s)	196, 270, 460
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	4 cut(s)	205, 222, 530, 820
AcuI	CTGAAG	2 cut(s)	929, 1146
AfaI	GTAC	4 cut(s)	140, 933, 998, 1209
AfiI	CCNNNNNNNGG	4 cut(s)	400, 681, 1067, 1337
AflII	CTTAAG	1 cut(s)	250
AluBI	AGCT	9 cut(s)	103, 145, 249, 297, 1055, 1104, 1141, 1240, 1472
AluI	AGCT	9 cut(s)	103, 145, 249, 297, 1055, 1104, 1141, 1240, 1472
Alw21I	GWGCWC	1 cut(s)	1273
Alw26I	GTCTC	2 cut(s)	420, 1405
AlwNI	CAGNNNCTG	2 cut(s)	1055, 1089
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	6 cut(s)	91, 100, 776, 961, 1052, 1445
ApoI	RAATTY	4 cut(s)	205, 222, 530, 820
AspA2I	CCTAGG	1 cut(s)	751
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	1504
AvaII	GGWCC	1 cut(s)	84
AvrII	CCTAGG	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	1069, 1102
BalI	TGGCCA	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	1377
Bbv12I	GWGCWC	1 cut(s)	1273
BbvCI	CCTCAGC	2 cut(s)	1241, 1481
BbvI	GCAGC	6 cut(s)	103, 112, 788, 973, 1064, 1432
BccI	CCATC	5 cut(s)	311, 416, 1186, 1211, 1495
BcgI	CGANNNNNNTGC	2 cut(s)	950, 984
BcoDI	GTCTC	2 cut(s)	420, 1405
BfaI	CTAG	2 cut(s)	155, 752
BfmI	CTRYAG	3 cut(s)	621, 884, 1081
BfrI	CTTAAG	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	6 cut(s)	92, 101, 777, 962, 1053, 1446
BlnI	CCTAGG	1 cut(s)	751
BlsI	GCNGC	6 cut(s)	93, 102, 778, 963, 1054, 1447
BmcAI	AGTACT	1 cut(s)	933
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	3 cut(s)	85, 86, 1254
BmsI	GCATC	5 cut(s)	138, 160, 207, 661, 1108
BplI	GAGNNNNNCTC	4 cut(s)	164, 196, 1384, 1416
Bpu10I	CCTNAGC	3 cut(s)	792, 1241, 1481
BpuEI	CTTGAG	1 cut(s)	1090
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaJI	CCNNGG	2 cut(s)	345, 751
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 681, 1067, 1337
Bse1I	ACTGG	3 cut(s)	381, 405, 663
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	1023
BseAI	TCCGGA	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	345, 751
BseGI	GGATG	6 cut(s)	169, 198, 266, 1024, 1171, 1201
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	4 cut(s)	400, 681, 1067, 1337
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	8 cut(s)	251, 783, 849, 1194, 1232, 1250, 1382, 1472
BseNI	ACTGG	3 cut(s)	381, 405, 663
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	6 cut(s)	103, 112, 788, 973, 1064, 1432
BseYI	CCCAGC	2 cut(s)	87, 631
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	1273
BsiSI	CCGG	2 cut(s)	513, 1068
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	4 cut(s)	400, 681, 1067, 1337
BsmAI	GTCTC	2 cut(s)	420, 1405
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	395, 1273, 1377
Bsp13I	TCCGGA	1 cut(s)	512
Bsp1407I	TGTACA	2 cut(s)	138, 996
Bsp143I	GATC	3 cut(s)	263, 562, 688
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	3 cut(s)	196, 270, 460
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	8 cut(s)	252, 784, 850, 1195, 1233, 1249, 1383, 1473
BspEI	TCCGGA	1 cut(s)	512
BspLI	GGNNCC	3 cut(s)	85, 86, 1254
BspMI	ACCTGC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	522
BsrGI	TGTACA	2 cut(s)	138, 996
BsrI	ACTGG	3 cut(s)	381, 405, 663
BssECI	CCNNGG	2 cut(s)	345, 751
BssMI	GATC	3 cut(s)	263, 562, 688
BssT1I	CCWWGG	2 cut(s)	345, 751
Bst4CI	ACNGT	7 cut(s)	68, 733, 834, 880, 1085, 1369, 1453
BstAFI	CTTAAG	1 cut(s)	250
BstAUI	TGTACA	2 cut(s)	138, 996
BstC8I	GCNNGC	5 cut(s)	954, 966, 970, 1050, 1420
BstDEI	CTNAG	9 cut(s)	260, 792, 858, 1203, 1236, 1241, 1391, 1407, 1481
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	6 cut(s)	169, 198, 266, 1024, 1171, 1201
BstKTI	GATC	3 cut(s)	266, 565, 691
BstMAI	GTCTC	2 cut(s)	420, 1405
BstMBI	GATC	3 cut(s)	263, 562, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 100, 157, 496, 773, 958
BstSFI	CTRYAG	3 cut(s)	621, 884, 1081
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	6 cut(s)	103, 112, 788, 973, 1064, 1432
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	2 cut(s)	330, 435
BtsCI	GGATG	6 cut(s)	169, 198, 266, 1024, 1171, 1201
BtsIMutI	CAGTG	5 cut(s)	73, 374, 656, 905, 1449
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	5 cut(s)	954, 966, 970, 1050, 1420
CaiI	CAGNNNCTG	2 cut(s)	1055, 1089
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	4 cut(s)	139, 932, 997, 1208
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	5 cut(s)	346, 443, 545, 676, 1353
CviQI	GTAC	4 cut(s)	139, 932, 997, 1208
DdeI	CTNAG	9 cut(s)	260, 792, 858, 1203, 1236, 1241, 1391, 1407, 1481
DpnI	GATC	3 cut(s)	265, 564, 690
DpnII	GATC	3 cut(s)	263, 562, 688
DraI	TTTAAA	2 cut(s)	114, 987
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	345, 751
Eco24I	GRGCYC	1 cut(s)	1377
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	929, 1146
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	345, 751
EcoT22I	ATGCAT	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	1377
ErhI	CCWWGG	2 cut(s)	345, 751
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	5 cut(s)	349, 446, 548, 679, 1356
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	345, 442, 544, 675, 1352
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	1077
Fnu4HI	GCNGC	6 cut(s)	92, 101, 777, 962, 1053, 1446
FokI	GGATG	6 cut(s)	176, 185, 253, 1031, 1178, 1208
FriOI	GRGCYC	1 cut(s)	1377
Fsp4HI	GCNGC	6 cut(s)	92, 101, 777, 962, 1053, 1446
FspBI	CTAG	2 cut(s)	155, 752
GluI	GCNGC	6 cut(s)	92, 101, 777, 962, 1053, 1446
GsaI	CCCAGC	2 cut(s)	91, 635
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	513, 1068
Hin1II	CATG	5 cut(s)	349, 446, 548, 679, 1356
HindIII	AAGCTT	2 cut(s)	295, 1470
HinfI	GANTC	8 cut(s)	16, 256, 434, 977, 1034, 1295, 1346, 1387
HpaII	CCGG	2 cut(s)	513, 1068
HphI	GGTGA	1 cut(s)	1504
Hpy166II	GTNNAC	4 cut(s)	700, 854, 997, 1078
Hpy188I	TCNGA	7 cut(s)	213, 261, 562, 868, 1126, 1138, 1392
Hpy188III	TCNNGA	6 cut(s)	13, 232, 385, 438, 513, 706
Hpy8I	GTNNAC	4 cut(s)	700, 854, 997, 1078
Hpy99I	CGWCG	2 cut(s)	434, 1138
HpyAV	CCTTC	4 cut(s)	53, 703, 904, 1259
HpyCH4III	ACNGT	7 cut(s)	68, 733, 834, 880, 1085, 1369, 1453
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 100, 157, 496, 773, 958
HpyF3I	CTNAG	9 cut(s)	260, 792, 858, 1203, 1236, 1241, 1391, 1407, 1481
Hsp92II	CATG	5 cut(s)	349, 446, 548, 679, 1356
KflI	GGGWCCC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	263, 562, 688
LmnI	GCTCC	4 cut(s)	108, 515, 1138, 1268
Lsp1109I	GCAGC	6 cut(s)	103, 112, 788, 973, 1064, 1432
LweI	GCATC	5 cut(s)	138, 160, 207, 661, 1108
MaeI	CTAG	2 cut(s)	155, 752
MaeIII	GTNAC	3 cut(s)	242, 1198, 1306
MalI	GATC	3 cut(s)	265, 564, 690
MboI	GATC	3 cut(s)	263, 562, 688
MhlI	GDGCHC	3 cut(s)	395, 1273, 1377
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	9 cut(s)	43, 205, 222, 517, 530, 820, 1113, 1300, 1507
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	25, 1381
MmeI	TCCRAC	5 cut(s)	112, 623, 721, 763, 1116
Mox20I	TGGCCA	1 cut(s)	350
Mph1103I	ATGCAT	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	6 cut(s)	113, 251, 281, 359, 986, 1497
MslI	CAYNNNNRTG	1 cut(s)	1043
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	2 cut(s)	1055, 1240
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	513, 1068
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	6 cut(s)	97, 100, 157, 496, 773, 958
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	3 cut(s)	263, 562, 688
NlaIII	CATG	5 cut(s)	349, 446, 548, 679, 1356
NlaIV	GGNNCC	3 cut(s)	85, 86, 1254
NmuCI	GTSAC	2 cut(s)	242, 1198
NsiI	ATGCAT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	6 cut(s)	256, 434, 977, 1034, 1295, 1346
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	6 cut(s)	93, 102, 778, 963, 1054, 1447
PleI	GAGTC	2 cut(s)	24, 1381
PpsI	GAGTC	2 cut(s)	24, 1381
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
PspFI	CCCAGC	2 cut(s)	87, 631
PspN4I	GGNNCC	3 cut(s)	85, 86, 1254
PspPI	GGNCC	1 cut(s)	84
PspPPI	RGGWCCY	1 cut(s)	84
PstNI	CAGNNNCTG	2 cut(s)	1055, 1089
PvuII	CAGCTG	2 cut(s)	1055, 1240
RsaI	GTAC	4 cut(s)	140, 933, 998, 1209
RsaNI	GTAC	4 cut(s)	139, 932, 997, 1208
RseI	CAYNNNNRTG	1 cut(s)	1043
SaqAI	TTAA	6 cut(s)	113, 251, 281, 359, 986, 1497
SatI	GCNGC	6 cut(s)	92, 101, 777, 962, 1053, 1446
Sau3AI	GATC	3 cut(s)	263, 562, 688
Sau96I	GGNCC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	2 cut(s)	25, 1381
SduI	GDGCHC	3 cut(s)	395, 1273, 1377
SfaNI	GCATC	5 cut(s)	138, 160, 207, 661, 1108
SfcI	CTRYAG	3 cut(s)	621, 884, 1081
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	1043
SmlI	CTYRAG	2 cut(s)	250, 1105
SmoI	CTYRAG	2 cut(s)	250, 1105
Sse9I	AATT	9 cut(s)	43, 205, 222, 517, 530, 820, 1113, 1300, 1507
SsiI	CCGC	3 cut(s)	196, 270, 460
SspMI	CTAG	2 cut(s)	155, 752
StyI	CCWWGG	2 cut(s)	345, 751
TaaI	ACNGT	7 cut(s)	68, 733, 834, 880, 1085, 1369, 1453
TaqI	TCGA	1 cut(s)	50
TasI	AATT	9 cut(s)	43, 205, 222, 517, 530, 820, 1113, 1300, 1507
TatI	WGTACW	3 cut(s)	138, 931, 996
TfiI	GAWTC	6 cut(s)	256, 434, 977, 1034, 1295, 1346
Tru1I	TTAA	6 cut(s)	113, 251, 281, 359, 986, 1497
Tru9I	TTAA	6 cut(s)	113, 251, 281, 359, 986, 1497
TscAI	CASTG	5 cut(s)	73, 381, 663, 912, 1456
TseFI	GTSAC	2 cut(s)	242, 1198
TseI	GCWGC	6 cut(s)	91, 100, 776, 961, 1052, 1445
Tsp45I	GTSAC	2 cut(s)	242, 1198
TspDTI	ATGAA	3 cut(s)	533, 1182, 1371
TspGWI	ACGGA	1 cut(s)	970
TspRI	CASTG	5 cut(s)	73, 381, 663, 912, 1456
Van91I	CCANNNNNTGG	1 cut(s)	681
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	4 cut(s)	205, 222, 530, 820
XmaJI	CCTAGG	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	1077
XspI	CTAG	2 cut(s)	155, 752
ZrmI	AGTACT	1 cut(s)	933
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.