Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8173668.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 676

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8173668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

gttgaaggacttgaagagttgttgaaccaatctccagagaaagttatgattggatcagcaagtgtctctcgtactgcggctagaaccaccactcggagaaaggccgtcaatgaagagccagagagctcacagccattgactcgcaccactaggcgtgctgtgacgaagaagactgttgctgaagaggtggaccaggaaaagacacaggttccacctaagactcctgctgcaccaagcaccaggaggagggctccagcggcttcagcttgccagaagacagagaccctaactgaaacaacttctgtgcagcgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.35

Weight (kDa)

9.88

Isoelectric Point (pI)

81.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 257
AclWI	GGATC	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	201, 246
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	93, 246
AgsI	TTSAA	3 cut(s)	5, 14, 25
AjnI	CCWGG	2 cut(s)	192, 239
AluBI	AGCT	2 cut(s)	126, 266
AluI	AGCT	2 cut(s)	126, 266
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	70, 275
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	227, 307
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	128, 253
BbsI	GAAGAC	2 cut(s)	176, 281
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	194, 241
BcoDI	GTCTC	2 cut(s)	70, 275
BfaI	CTAG	2 cut(s)	81, 150
BisI	GCNGC	4 cut(s)	78, 228, 258, 308
BlsI	GCNGC	4 cut(s)	79, 229, 259, 309
Bme1390I	CCNGG	2 cut(s)	194, 241
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	210, 252
BmrFI	CCNGG	2 cut(s)	194, 241
BpiI	GAAGAC	2 cut(s)	176, 281
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	2 cut(s)	18, 237
BsaI	GGTCTC	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 246
BseBI	CCWGG	2 cut(s)	194, 241
BseLI	CCNNNNNNNGG	2 cut(s)	93, 246
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	93, 246
BsmAI	GTCTC	2 cut(s)	70, 275
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	128, 253
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	77, 257
BspANI	GGCC	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	210, 252
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	275
BssMI	GATC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	194, 241
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	3 cut(s)	9, 108, 177
BstC8I	GCNNGC	2 cut(s)	156, 268
BstDEI	CTNAG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	70, 275
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 263
BstNI	CCWGG	2 cut(s)	194, 241
BstSCI	CCNGG	2 cut(s)	192, 239
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	176, 281
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	156, 268
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	72
CviJI	RGCY	8 cut(s)	80, 104, 118, 126, 133, 251, 260, 266
CviKI_1	RGCY	8 cut(s)	80, 104, 118, 126, 133, 251, 260, 266
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eam1104I	CTCTTC	3 cut(s)	9, 108, 177
EarI	CTCTTC	3 cut(s)	9, 108, 177
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	128, 253
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	201, 246
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	2 cut(s)	192, 239
EcoT38I	GRGCYC	2 cut(s)	128, 253
FaiI	YATR	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	78, 228, 258, 308
FriOI	GRGCYC	2 cut(s)	128, 253
Fsp4HI	GCNGC	4 cut(s)	78, 228, 258, 308
FspBI	CTAG	2 cut(s)	81, 150
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	78, 228, 258, 308
GsuI	CTGGAG	2 cut(s)	18, 237
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	139, 220
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	230, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 263
HpyF3I	CTNAG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	53
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	81, 150
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	6 cut(s)	26, 125, 178, 181, 194, 286
MhlI	GDGCHC	2 cut(s)	128, 253
MlyI	GAGTC	2 cut(s)	133, 214
MnlI	CCTC	3 cut(s)	178, 237, 240
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	194, 241
MvaI	CCWGG	2 cut(s)	194, 241
MwoI	GCNNNNNNNGC	2 cut(s)	257, 263
NdeII	GATC	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	210, 252
NmuCI	GTSAC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	79, 229, 259, 309
PleI	GAGTC	2 cut(s)	133, 214
PpsI	GAGTC	2 cut(s)	133, 214
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	192, 239
PspGI	CCWGG	2 cut(s)	192, 239
PspN4I	GGNNCC	2 cut(s)	210, 252
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	78, 228, 258, 308
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	133, 214
ScrFI	CCNGG	2 cut(s)	194, 241
SduI	GDGCHC	2 cut(s)	128, 253
SetI	ASST	5 cut(s)	128, 189, 210, 217, 268
SinI	GGWCC	1 cut(s)	190
SsiI	CCGC	2 cut(s)	77, 257
SspMI	CTAG	2 cut(s)	81, 150
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	192, 239
TaaI	ACNGT	1 cut(s)	175
TauI	GCSGC	2 cut(s)	80, 260
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	227, 307
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	190
XspI	CTAG	2 cut(s)	81, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.