Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020611.1

Orthogroup ID

OG0002478

Physical Location & Seq

Genomic Coordinates Forward (+)

66317 .. 67111

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020611.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggatgtgaccaagaggttatggatggatctgatgaaaagatctcagttgaggataaaagaacctcattgtgaaggagcacaagatttggtagttgtgaaagattctaattatgttactactgttcaatatgtgttgccacatacagtaaacgaagccccaagtgctgtgaaaactgttgagcccatttcattgactctgagttcaattcccactaagagaccggcaagcaagagttttgatgtgaatgtggctgccattgtgatagagcctaaagaagcttcaaggctgaggcattgggataacataaatgttatcatggaggcaagtgaagaagaagatcctgaggatgagatctctgaagatgagtcggttgatgaagcttcatctgagcttcaggataacatgaatgatatcaggaaacaaatgaagaggaaggctgttgcctctgagagtgagacagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

4.74

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03130 AT5G17160
fragaria_vesca	FvH4_1g07490 FvH4_2g06690 FvH4_2g06700 FvH4_5g14120 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621 FvH4_7g33621
malus_domestica	MD01G1233900.v1.1 MD07G1306000.v1.1
prunus_persica	Prupe.2G324100_v2.0.a1
pyrus_communis	pycom01g24220 pycom07g27920
rosa_chinensis	RchiOBHm_Chr1g0383881 RchiOBHm_Chr4g0397811
rosa_laevigata	RLG00000009396 RLG00000013940 RLG00000026089
rosa_multiflora	Rmu_co8173668.1_g000001 Rmu_co8232707.1_g000001 Rmu_sc0002148.1_g000005 Rmu_sc0002321.1_g000010 Rmu_sc0002321.1_g000020 Rmu_sc0002378.1_g000002 Rmu_sc0005139.1_g000031 Rmu_sc0012471.1_g000003 Rmu_sc0013807.1_g000006 Rmu_sc0020611.1_g000016 Rmu_sc0028224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277180 Rroxscaffold_5G00342610
rosa_rugosa	Rorug01G0442700
rosa_samantha	Rh1AG468700 Rh1BG426400 Rh1CG439100 Rh1DG459200 Rh4CG087100 Rh4CG091100
rosa_wichuraiana	Rw1G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	36, 335
AcuI	CTGAAG	2 cut(s)	380, 381
AgsI	TTSAA	3 cut(s)	128, 207, 285
AluBI	AGCT	3 cut(s)	281, 383, 394
AluI	AGCT	3 cut(s)	281, 383, 394
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	214, 452
AlwI	GGATC	2 cut(s)	36, 335
ApeKI	GCWGC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	214, 452
BglII	AGATCT	2 cut(s)	41, 354
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	345
BseGI	GGATG	3 cut(s)	10, 30, 355
BseMII	CTCAG	6 cut(s)	59, 191, 281, 336, 381, 441
BseXI	GCAGC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	214, 452
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	82, 186
Bsp143I	GATC	4 cut(s)	28, 41, 340, 354
BspCNI	CTCAG	6 cut(s)	58, 192, 282, 337, 382, 442
BspPI	GGATC	2 cut(s)	36, 335
BspTNI	GGTCTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	4 cut(s)	28, 41, 340, 354
Bst4CI	ACNGT	4 cut(s)	124, 148, 178, 463
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	7 cut(s)	45, 200, 216, 290, 345, 390, 450
BstF5I	GGATG	3 cut(s)	10, 30, 355
BstKTI	GATC	4 cut(s)	31, 44, 343, 357
BstMAI	GTCTC	2 cut(s)	214, 452
BstMBI	GATC	4 cut(s)	28, 41, 340, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	4 cut(s)	28, 41, 340, 354
BstYI	RGATCY	4 cut(s)	28, 41, 340, 354
Bsu36I	CCTNAGG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	10, 30, 355
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	223
CviAII	CATG	2 cut(s)	319, 406
CviJI	RGCY	9 cut(s)	158, 184, 254, 271, 281, 289, 383, 394, 440
CviKI_1	RGCY	9 cut(s)	158, 184, 254, 271, 281, 289, 383, 394, 440
DdeI	CTNAG	7 cut(s)	45, 200, 216, 290, 345, 390, 450
DpnI	GATC	4 cut(s)	30, 43, 342, 356
DpnII	GATC	4 cut(s)	28, 41, 340, 354
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	380, 381
Eco81I	CCTNAGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	2 cut(s)	322, 409
FaiI	YATR	8 cut(s)	22, 114, 132, 144, 308, 320, 407, 466
FatI	CATG	2 cut(s)	318, 405
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	3 cut(s)	17, 37, 362
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	322, 409
HindIII	AAGCTT	2 cut(s)	279, 381
HinfI	GANTC	3 cut(s)	104, 196, 368
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	5 cut(s)	33, 201, 361, 391, 451
Hpy188III	TCNNGA	3 cut(s)	344, 398, 418
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	68, 430
HpyCH4III	ACNGT	4 cut(s)	124, 148, 178, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	7 cut(s)	45, 200, 216, 290, 345, 390, 450
Hsp92II	CATG	2 cut(s)	322, 409
Kzo9I	GATC	4 cut(s)	28, 41, 340, 354
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	4 cut(s)	237, 357, 383, 403
Lsp1109I	GCAGC	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	7, 115
MalI	GATC	4 cut(s)	30, 43, 342, 356
MboI	GATC	4 cut(s)	28, 41, 340, 354
MboII	GAAGA	5 cut(s)	344, 347, 350, 374, 442
MflI	RGATCY	4 cut(s)	28, 41, 340, 354
MhlI	GDGCHC	2 cut(s)	82, 186
MluCI	AATT	2 cut(s)	109, 207
MlyI	GAGTC	2 cut(s)	190, 377
MnlI	CCTC	8 cut(s)	9, 45, 75, 285, 316, 340, 426, 457
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	4 cut(s)	28, 41, 340, 354
NlaIII	CATG	2 cut(s)	322, 409
NmuCI	GTSAC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	190, 376
PpsI	GAGTC	2 cut(s)	190, 376
PsuI	RGATCY	4 cut(s)	28, 41, 340, 354
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	28, 41, 340, 354
SchI	GAGTC	2 cut(s)	190, 377
SduI	GDGCHC	2 cut(s)	82, 186
SetI	ASST	5 cut(s)	20, 67, 283, 385, 396
Sse9I	AATT	2 cut(s)	109, 207
TaaI	ACNGT	4 cut(s)	124, 148, 178, 463
TasI	AATT	2 cut(s)	109, 207
TfiI	GAWTC	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	6 cut(s)	50, 180, 375, 393, 422, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.