AT5G17160

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5639646 .. 5642623
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17160.1

Sequence Viewer

Length: 1710 bp
ATGGATTTCCACAGCCTTTTGAGAAGGGATCTTCAATTTCTCTGCAAGAGGAACAAAATCCCAGCTAATATGACCAATATCGCCATGGCTGATGCTCTCAAATCTCTTGAGATTGTTGATGGTCTTGATGAATACATGAATCAATCTGAATCCAGTGCTCCGCATTCTCCAACCAGTGTAGCAAAGCTGCCACCAAGCACTGCAACTAGAACAACTCGACGGAAGACCACAACAAAAGCTGAGCCTCAGCCATCATCTCAGTTGGTGTCCCGTTCTTGTCGTTCGACGAGCAAGTCTCTTGCTGGAGATATGGACCAGGAAAACATAAACAAGAATGTTGCTCAAGAAATGAAGACTAGCAATGTCAAGTTTGAAGCCAATGTGCTCAAAACTCCAGCAGCAGGAAGCACAAGGAAAACTTCAGCAGCAACTTCTTGCACTAAGAAGGATGAATTGGTCCAGTCGGTCTACAGCACTAGGAGATCAACCAGGCTGTTAGAGAAATGTATGGCCGATCTGAGTTTGAAGACTAAAGAAACTGTGGATAATAAACCTGCCAAGAATGAAGATACAGAACAGAAAGTATCTGCACAGGAGAAGAATCTAACTGGTTCAGAGGGTGAAGTTATCCCAGGTAGAGATTTAAGTGTTTCCATGGAACAAGTATGGGAGAACTTGAAGAATGACAGTGACAAGATAGCTGGAGATCTTGAGGTAATTGTTGTTATGGATGCAAACACGGAGGCCAACAAGGAAGAGATGAATGAAGTTACGGCTGATAAAAAGGAATCTGAGAATAGCTTAGTCCAAGTAGACAAAGAAGAAGAAACGTTGCAGGCCATCTGTGAGGAAGGTCCGAAGAAGAATGACAATGATCAGGAGATTGGAGATCTTGTGATATATGTTGATGTTAGTGATATTCCTCTCTTGGAATCTGCAATCACTGAGACACACAATGATGATAATGAGTCCAAGAACGTTCTAGCTATTGATAGGTCAGTAGACCAACAAGAAACAGAACATGCAATTCAGGAGAATGATGCTGAGCCAGAGACAAAGGTGAACCAAACCGATAGTGATGCTGGTGATTCAAAAACCAAACAGGCAATTCAGGAGAATGACTCTGAACCTGAGAAGATCAACAATTTTGATGAAGAGACAATGGTGGACCAAACCGACAGTGATTCCGAAACAGAACCGGAAGAAAATCATTCTGGTGTTGACTCAGACGGCACTATCTCTGAAGCTGATTCGAACCAAGCCGTAGTGGGATCTGATATTGCGGATGAAGAGATGACTCTTTCGGGATCAGAAGGCTCTGCTGCTACTGCTCCAAATTCACCTCCTCGTCTTGAAGAGGCTAAAGTCATCAAAACAACTCTGGTATCTCCATTTGCAGTAGAATCAATCTCAACTCAATTCCCAAGACCAAGCAAATCAACAACTCCATTAAAGAACTCGCCTCTGAAGCTGGTCAATGAGAACAAGGAGAACAACATGGAGATGATGATGATGAATGTTAACAACAATGAGAATGGAGAGAGCAAAGGCGAGGAGGGTAAGAAGAAGAAGAAGGTGACAATCGATGAAGAGAACTTGAAAAATACGAGCATAAGGCAACTGGAGAAGATGGTGAAGGAACTTTCTATAAAGACCAGTAACAGAACTGCGTTGCAGGTATTGCCTGGGAATAATAAGACTGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

569

Amino Acids

62.61

Weight (kDa)

4.66

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
Acc36I ACCTGC 2 cut(s) 562, 1666
AccI GTMKAC 3 cut(s) 468, 813, 1002
AciI CCGC 2 cut(s) 161, 1283
AclI AACGTT 2 cut(s) 830, 978
AclWI GGATC 3 cut(s) 36, 1279, 1315
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 1336
AcuI CTGAAG 3 cut(s) 405, 1263, 1487
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 7 cut(s) 35, 374, 526, 679, 1092, 1355, 1600
AjnI CCWGG 4 cut(s) 315, 488, 631, 1684
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 8 cut(s) 65, 187, 239, 701, 801, 986, 1247, 1471
AluI AGCT 8 cut(s) 65, 187, 239, 701, 801, 986, 1247, 1471
Alw21I GWGCWC 2 cut(s) 160, 387
Alw26I GTCTC 4 cut(s) 300, 941, 1046, 1151
AlwI GGATC 3 cut(s) 36, 1279, 1315
AoxI GGCC 3 cut(s) 510, 744, 837
ApeKI GCWGC 4 cut(s) 187, 398, 425, 1322
ApoI RAATTY 1 cut(s) 1336
AspS9I GGNCC 4 cut(s) 313, 457, 854, 1168
AsuHPI GGTGA 6 cut(s) 632, 1072, 1097, 1332, 1588, 1645
AsuII TTCGAA 1 cut(s) 1253
AvaII GGWCC 4 cut(s) 313, 457, 854, 1168
BaeI ACNNNNGTAYC 2 cut(s) 1368, 1401
BbsI GAAGAC 3 cut(s) 230, 359, 533
Bbv12I GWGCWC 2 cut(s) 160, 387
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 174, 410, 437, 1309
BccI CCATC 4 cut(s) 113, 259, 848, 1624
BceAI ACGGC 3 cut(s) 789, 1246, 1247
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 4 cut(s) 317, 490, 633, 1686
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 4 cut(s) 300, 941, 1046, 1151
BfaI CTAG 4 cut(s) 207, 357, 477, 983
BfmI CTRYAG 2 cut(s) 469, 1701
BfuAI ACCTGC 2 cut(s) 562, 1666
BglII AGATCT 2 cut(s) 706, 889
BisI GCNGC 4 cut(s) 188, 399, 426, 1323
BlpI GCTNAGC 2 cut(s) 240, 1044
BlsI GCNGC 4 cut(s) 189, 400, 427, 1324
Bme1390I CCNGG 4 cut(s) 317, 490, 633, 1686
Bme18I GGWCC 4 cut(s) 313, 457, 854, 1168
BmgT120I GGNCC 4 cut(s) 313, 457, 854, 1168
BmrFI CCNGG 4 cut(s) 317, 490, 633, 1686
BmsI GCATC 4 cut(s) 82, 721, 1030, 1069
BpiI GAAGAC 3 cut(s) 230, 359, 533
BplI GAGNNNNNCTC 4 cut(s) 280, 312, 1106, 1138
BpmI CTGGAG 4 cut(s) 324, 378, 723, 1643
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 2 cut(s) 240, 1044
Bpu14I TTCGAA 1 cut(s) 1253
BpuEI CTTGAG 3 cut(s) 128, 327, 731
Bsa29I ATCGAT 1 cut(s) 1584
BsaJI CCNNGG 4 cut(s) 84, 631, 654, 1685
BsaWI WCCGGW 1 cut(s) 1198
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 6 cut(s) 153, 174, 460, 613, 1626, 1656
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 4 cut(s) 317, 490, 633, 1686
BseCI ATCGAT 1 cut(s) 1584
BseDI CCNNGG 4 cut(s) 84, 631, 654, 1685
BseGI GGATG 3 cut(s) 454, 736, 1291
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 9 cut(s) 231, 260, 272, 509, 783, 936, 1035, 1122, 1239
BseNI ACTGG 6 cut(s) 153, 174, 460, 613, 1626, 1656
BseRI GAGGAG 2 cut(s) 1335, 1568
BseXI GCAGC 4 cut(s) 174, 410, 437, 1309
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 3 cut(s) 512, 746, 839
BshVI ATCGAT 1 cut(s) 1584
BsiHKAI GWGCWC 2 cut(s) 160, 387
BsiSI CCGG 1 cut(s) 1199
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 4 cut(s) 300, 941, 1046, 1151
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 3 cut(s) 512, 746, 839
Bsp119I TTCGAA 1 cut(s) 1253
Bsp1286I GDGCHC 2 cut(s) 160, 387
Bsp143I GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
Bsp1720I GCTNAGC 2 cut(s) 240, 1044
Bsp19I CCATGG 2 cut(s) 84, 654
BspACI CCGC 2 cut(s) 161, 1283
BspANI GGCC 3 cut(s) 512, 746, 839
BspCNI CTCAG 9 cut(s) 232, 259, 271, 510, 784, 937, 1036, 1123, 1238
BspDI ATCGAT 1 cut(s) 1584
BspMAI CTGCAG 1 cut(s) 1705
BspMI ACCTGC 2 cut(s) 562, 1666
BspPI GGATC 3 cut(s) 36, 1279, 1315
BspT104I TTCGAA 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 6 cut(s) 153, 174, 460, 613, 1626, 1656
BssECI CCNNGG 4 cut(s) 84, 631, 654, 1685
BssMI GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
BssT1I CCWWGG 2 cut(s) 84, 654
Bst2UI CCWGG 4 cut(s) 317, 490, 633, 1686
Bst4CI ACNGT 3 cut(s) 541, 689, 1181
Bst6I CTCTTC 5 cut(s) 750, 1149, 1284, 1350, 1584
BstAPI GCANNNNNTGC 1 cut(s) 1681
BstBI TTCGAA 1 cut(s) 1253
BstC8I GCNNGC 1 cut(s) 837
BstDSI CCRYGG 2 cut(s) 84, 654
BstF5I GGATG 3 cut(s) 454, 736, 1291
BstKTI GATC 9 cut(s) 31, 485, 517, 709, 877, 892, 1140, 1274, 1310
BstMAI GTCTC 4 cut(s) 300, 941, 1046, 1151
BstMBI GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
BstMWI GCNNNNNNNGC 3 cut(s) 1328, 1468, 1681
BstNI CCWGG 4 cut(s) 317, 490, 633, 1686
BstNSI RCATGY 1 cut(s) 1025
BstSCI CCNGG 4 cut(s) 315, 488, 631, 1684
BstSFI CTRYAG 2 cut(s) 469, 1701
BstV1I GCAGC 4 cut(s) 174, 410, 437, 1309
BstV2I GAAGAC 3 cut(s) 230, 359, 533
BstX2I RGATCY 4 cut(s) 28, 706, 889, 1271
BstYI RGATCY 4 cut(s) 28, 706, 889, 1271
Bsu15I ATCGAT 1 cut(s) 1584
BsuRI GGCC 3 cut(s) 512, 746, 839
BsuTUI ATCGAT 1 cut(s) 1584
BtgI CCRYGG 2 cut(s) 84, 654
BtsCI GGATG 3 cut(s) 454, 736, 1291
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 6 cut(s) 160, 181, 198, 694, 942, 1186
BveI ACCTGC 2 cut(s) 562, 1666
Cac8I GCNNGC 1 cut(s) 837
Cfr13I GGNCC 4 cut(s) 313, 457, 854, 1168
ClaI ATCGAT 1 cut(s) 1584
CviAII CATG 5 cut(s) 85, 136, 655, 1022, 1498
DpnI GATC 9 cut(s) 30, 484, 516, 708, 876, 891, 1139, 1273, 1309
DpnII GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 5 cut(s) 750, 1149, 1284, 1350, 1584
EarI CTCTTC 5 cut(s) 750, 1149, 1284, 1350, 1584
Eco130I CCWWGG 2 cut(s) 84, 654
Eco47I GGWCC 4 cut(s) 313, 457, 854, 1168
Eco57I CTGAAG 3 cut(s) 405, 1263, 1487
EcoRII CCWGG 4 cut(s) 315, 488, 631, 1684
EcoT14I CCWWGG 2 cut(s) 84, 654
ErhI CCWWGG 2 cut(s) 84, 654
FaeI CATG 5 cut(s) 88, 139, 658, 1025, 1501
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 84, 135, 654, 1021, 1497
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 3 cut(s) 468, 813, 1002
Fnu4HI GCNGC 4 cut(s) 188, 399, 426, 1323
FokI GGATG 3 cut(s) 461, 743, 1298
Fsp4HI GCNGC 4 cut(s) 188, 399, 426, 1323
FspBI CTAG 4 cut(s) 207, 357, 477, 983
GluI GCNGC 4 cut(s) 188, 399, 426, 1323
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 4 cut(s) 324, 378, 723, 1643
HaeIII GGCC 3 cut(s) 512, 746, 839
HapII CCGG 1 cut(s) 1199
Hin1II CATG 5 cut(s) 88, 139, 658, 1025, 1501
HincII GTYRAC 2 cut(s) 1222, 1522
HindII GTYRAC 2 cut(s) 1222, 1522
HpaI GTTAAC 1 cut(s) 1522
HpaII CCGG 1 cut(s) 1199
HphI GGTGA 6 cut(s) 632, 1072, 1097, 1332, 1588, 1645
Hpy166II GTNNAC 7 cut(s) 469, 814, 1003, 1063, 1168, 1222, 1522
Hpy188III TCNNGA 9 cut(s) 107, 125, 344, 710, 878, 1031, 1112, 1305, 1352
Hpy8I GTNNAC 7 cut(s) 469, 814, 1003, 1063, 1168, 1222, 1522
Hpy99I CGWCG 2 cut(s) 222, 289
HpyAV CCTTC 6 cut(s) 18, 439, 845, 1307, 1567, 1630
HpyCH4III ACNGT 3 cut(s) 541, 689, 1181
HpyCH4IV ACGT 2 cut(s) 830, 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 1328, 1468, 1681
HpySE526I ACGT 2 cut(s) 830, 978
Hsp92II CATG 5 cut(s) 88, 139, 658, 1025, 1501
Ksp22I TGATCA 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 1522
Kzo9I GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
LmnI GCTCC 2 cut(s) 163, 1336
Lsp1109I GCAGC 4 cut(s) 174, 410, 437, 1309
LweI GCATC 4 cut(s) 82, 721, 1030, 1069
MaeI CTAG 4 cut(s) 207, 357, 477, 983
MaeII ACGT 2 cut(s) 830, 978
MaeIII GTNAC 4 cut(s) 689, 769, 1576, 1658
MalI GATC 9 cut(s) 30, 484, 516, 708, 876, 891, 1139, 1273, 1309
MboI GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
MflI RGATCY 4 cut(s) 28, 706, 889, 1271
MhlI GDGCHC 2 cut(s) 160, 387
MluCI AATT 8 cut(s) 35, 452, 717, 1026, 1107, 1144, 1336, 1418
MlyI GAGTC 4 cut(s) 977, 1115, 1217, 1291
MmeI TCCRAC 1 cut(s) 194
MseI TTAA 3 cut(s) 644, 1451, 1521
MslI CAYNNNNRTG 3 cut(s) 957, 1215, 1502
MspI CCGG 1 cut(s) 1199
MspR9I CCNGG 4 cut(s) 317, 490, 633, 1686
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 4 cut(s) 317, 490, 633, 1686
MwoI GCNNNNNNNGC 3 cut(s) 1328, 1468, 1681
NcoI CCATGG 2 cut(s) 84, 654
NdeII GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
NlaIII CATG 5 cut(s) 88, 139, 658, 1025, 1501
NmuCI GTSAC 2 cut(s) 689, 1576
NspI RCATGY 1 cut(s) 1025
NspV TTCGAA 1 cut(s) 1253
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 9 cut(s) 139, 149, 601, 788, 932, 1088, 1184, 1250, 1403
PkrI GCNGC 4 cut(s) 189, 400, 427, 1324
PleI GAGTC 4 cut(s) 976, 1115, 1217, 1291
PpsI GAGTC 4 cut(s) 976, 1115, 1217, 1291
Psp1406I AACGTT 2 cut(s) 830, 978
Psp6I CCWGG 4 cut(s) 315, 488, 631, 1684
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 4 cut(s) 315, 488, 631, 1684
PspPI GGNCC 4 cut(s) 313, 457, 854, 1168
PstI CTGCAG 1 cut(s) 1705
PsuI RGATCY 4 cut(s) 28, 706, 889, 1271
RseI CAYNNNNRTG 3 cut(s) 957, 1215, 1502
SaqAI TTAA 3 cut(s) 644, 1451, 1521
SatI GCNGC 4 cut(s) 188, 399, 426, 1323
Sau3AI GATC 9 cut(s) 28, 482, 514, 706, 874, 889, 1137, 1271, 1307
Sau96I GGNCC 4 cut(s) 313, 457, 854, 1168
SchI GAGTC 4 cut(s) 977, 1115, 1217, 1291
ScrFI CCNGG 4 cut(s) 317, 490, 633, 1686
SduI GDGCHC 2 cut(s) 160, 387
SfaNI GCATC 4 cut(s) 82, 721, 1030, 1069
SfcI CTRYAG 2 cut(s) 469, 1701
SfuI TTCGAA 1 cut(s) 1253
SinI GGWCC 4 cut(s) 313, 457, 854, 1168
SmiMI CAYNNNNRTG 3 cut(s) 957, 1215, 1502
SmlI CTYRAG 3 cut(s) 107, 342, 710
SmoI CTYRAG 3 cut(s) 107, 342, 710
Sse9I AATT 8 cut(s) 35, 452, 717, 1026, 1107, 1144, 1336, 1418
SsiI CCGC 2 cut(s) 161, 1283
SspMI CTAG 4 cut(s) 207, 357, 477, 983
StyD4I CCNGG 4 cut(s) 315, 488, 631, 1684
StyI CCWWGG 2 cut(s) 84, 654
TaaI ACNGT 3 cut(s) 541, 689, 1181
TaiI ACGT 2 cut(s) 833, 981
TaqI TCGA 4 cut(s) 217, 284, 1253, 1584
TaqII GACCGA 1 cut(s) 454
TasI AATT 8 cut(s) 35, 452, 717, 1026, 1107, 1144, 1336, 1418
TfiI GAWTC 9 cut(s) 139, 149, 601, 788, 932, 1088, 1184, 1250, 1403
Tru1I TTAA 3 cut(s) 644, 1451, 1521
Tru9I TTAA 3 cut(s) 644, 1451, 1521
TscAI CASTG 6 cut(s) 160, 181, 205, 694, 949, 1186
TseFI GTSAC 2 cut(s) 689, 1576
TseI GCWGC 4 cut(s) 187, 398, 425, 1322
Tsp45I GTSAC 2 cut(s) 689, 1576
TspGWI ACGGA 2 cut(s) 235, 755
TspRI CASTG 6 cut(s) 160, 181, 205, 694, 949, 1186
VpaK11BI GGWCC 4 cut(s) 313, 457, 854, 1168
XapI RAATTY 1 cut(s) 1336
XceI RCATGY 1 cut(s) 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmiI GTMKAC 3 cut(s) 468, 813, 1002
XspI CTAG 4 cut(s) 207, 357, 477, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.