Rorug01G0442700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002478
Physical Location & Seq
Reverse (-)
53992928 .. 53993608
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0442700.1

Sequence Viewer

Length: 681 bp
ATGGAAACCACAGAGCTCACTCACTTCACTCCCAAAACAACCATCACAATGGAGAAGGGAAGGCTCATCCGTCTCAATGATCACTGGGTCTCGATTGCTATAGACAATCTTGATTCTTTCGGGGACGTTGGGTACCTAGACTTCAAGTTTCTCGATCAGGTTTTACCCCACTGCTCCAAAGACCAGTTGATTCACATCGAGAAGAGCACAAAAAATACAGATCTGACTCCGATCAACGATAAGCTGTGGAAGAAGTTTTTTGAGAGAGAGTTCGGTGGCAAAGCCACTGATAAGGTGATCGAAAAGATGAAGATCAAGAAAGTGAATTACAAGTGGTCGGAGTTGTACCAGGCCAAGTCCAAGAGAGTGGAAAAGGCCGAGAAAGAAGTCGGTGAAAGATTGAAGAAGCTGTATGAGAAAGAAGTCGGTGAAAGATTGAAGAAGCTGTATGAGAAAGAAGTCGCCCAGAAACAAAGCCGGCGAGTTAGGGTTTTGGACAAGGTTCCACCTTCTTTGTCAAGCAATAAAAGAATTGGCTCCAACAAAGGGAGCAAACTGCTGAACAGAGTGAGGAAAAACTATCGAAATAGTCTGGAGGTCAGAAATATTGAAGCTATGAAGATGAAGATCGAGAACTGCTGCCAAGTGTTCCGATCTGATCAAAAAGCCAAGAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

26.6

Weight (kDa)

9.76

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 41 - 146 5.6e-20 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AfaI GTAC 2 cut(s) 134, 347
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 4 cut(s) 145, 403, 439, 611
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 5 cut(s) 16, 244, 409, 445, 614
AluI AGCT 5 cut(s) 16, 244, 409, 445, 614
Alw21I GWGCWC 2 cut(s) 18, 209
Alw26I GTCTC 2 cut(s) 77, 94
AoxI GGCC 2 cut(s) 351, 375
ApeKI GCWGC 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 307, 404, 440
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
Bbv12I GWGCWC 2 cut(s) 18, 209
BbvI GCAGC 1 cut(s) 626
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 2 cut(s) 79, 658
BcoDI GTCTC 2 cut(s) 77, 94
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 134, 504, 538
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 614
BsaBI GATNNNNATC 3 cut(s) 194, 311, 626
BsaI GGTCTC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse118I RCCGGY 1 cut(s) 477
Bse1I ACTGG 2 cut(s) 89, 184
Bse8I GATNNNNATC 3 cut(s) 194, 311, 626
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 3 cut(s) 194, 311, 626
BseLI CCNNNNNNNGG 1 cut(s) 546
BseNI ACTGG 2 cut(s) 89, 184
BseXI GCAGC 1 cut(s) 626
BshFI GGCC 2 cut(s) 353, 377
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 18, 209
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 546
BsmAI GTCTC 2 cut(s) 77, 94
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 353, 377
Bso31I GGTCTC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 18, 209
Bsp143I GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
BspANI GGCC 2 cut(s) 353, 377
BspLI GGNNCC 3 cut(s) 134, 504, 538
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 477
BsrI ACTGG 2 cut(s) 89, 184
BssAI RCCGGY 1 cut(s) 477
BssMI GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
Bst2UI CCWGG 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 479
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 9 cut(s) 82, 157, 223, 234, 300, 315, 630, 656, 661
BstMAI GTCTC 2 cut(s) 77, 94
BstMBI GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 2 cut(s) 49, 367
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 353, 377
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 3 cut(s) 82, 169, 285
Cac8I GCNNGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 477
Csp6I GTAC 2 cut(s) 133, 346
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviQI GTAC 2 cut(s) 133, 346
DpnI GATC 9 cut(s) 81, 156, 222, 233, 299, 314, 629, 655, 660
DpnII GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 4 cut(s) 101, 414, 450, 617
FaqI GGGAC 1 cut(s) 137
FbaI TGATCA 2 cut(s) 79, 658
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 640
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 2 cut(s) 353, 377
HapII CCGG 1 cut(s) 478
HinfI GANTC 3 cut(s) 113, 190, 226
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 307, 404, 440
Hpy188I TCNGA 6 cut(s) 225, 231, 340, 602, 653, 658
Hpy188III TCNNGA 7 cut(s) 91, 110, 152, 199, 316, 593, 631
HpyAV CCTTC 3 cut(s) 49, 54, 519
HpyCH4IV ACGT 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 126
KpnI GGTACC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 477
KroNI GCCGGC 1 cut(s) 479
Ksp22I TGATCA 2 cut(s) 79, 658
Kzo9I GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 179, 542, 549
LpnPI CCDG 8 cut(s) 70, 143, 197, 335, 362, 479, 491, 578
Lsp1109I GCAGC 1 cut(s) 626
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 126
MalI GATC 9 cut(s) 81, 156, 222, 233, 299, 314, 629, 655, 660
MboI GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
MboII GAAGA 7 cut(s) 214, 262, 322, 415, 451, 631, 637
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 18, 209
MluCI AATT 2 cut(s) 325, 531
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 318, 564
MnlI CCTC 2 cut(s) 564, 589
MroNI GCCGGC 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 479
NdeII GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
NgoMIV GCCGGC 1 cut(s) 477
NlaIV GGNNCC 3 cut(s) 134, 504, 538
NmeAIII GCCGAG 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 113, 190
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 134, 504, 538
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 2 cut(s) 134, 347
RsaNI GTAC 2 cut(s) 133, 346
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 9 cut(s) 79, 154, 220, 231, 297, 312, 627, 653, 658
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 18, 209
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 325, 531
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 129
TaqI TCGA 6 cut(s) 92, 153, 198, 300, 583, 630
TasI AATT 2 cut(s) 325, 531
TfiI GAWTC 2 cut(s) 113, 190
TscAI CASTG 3 cut(s) 89, 176, 292
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 3 cut(s) 323, 632, 638
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 3 cut(s) 89, 176, 292
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.