AT3G03750

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008003
Physical Location & Seq
Forward (+)
939900 .. 942094
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03750.1

Sequence Viewer

Length: 1017 bp
ATGCAGCGACTGCGAGAGTCACCACCACCGAAGACGCGTTGTCTTGGAGAAGCTTCCGACATTATTCCGGCCGCCGATCGATTTCTCCGATGTGCGAATTTGATTCTCCCATGGCTAAACCCTCGAGAACTCGCCGTTGTTGCTCAAACCTGCAAAACCTTATCCCTAATCTCGAAATCTCTAACCATTCACCGATCTCTCGACGCTGCACGATCCTTGGAAAACATCTCAATCCCGTTTCACAACTCCATCGATTCTCAACGATACGCGTACTTCATCTACACACCTTTTCAGATCCCCGCTTCATCTCCTCCTCCGCCGCGACAATGGTGGGGAGCTGCTGCTAATGAATGTGGATCGGAGTCTAGACCTTGTTTTGACTCAGTGAGTGAAAGCGGACGTTTTGGGGTGAGTTTAGTGGACGAGTCAGGATGCGAATGCGAGAGGTGTGAGGAAGGATACTGCAAGTGTTTAGCTTTCGCGGGGATGGAAGAGATAGCTAACGAATGTGGGTCGGGTTGTGGATGCGGGTCCGATTGTTCGAACCGGGTTACGCAGAAGGGGGTTTCGGTTAGTTTGAAGATTGTGAGAGATGAGAAGAAAGGTTGGTGCTTGTACGCTGACCAGCTTATCAAGCAAGCACGTAGACGTCAAAACATTTACGACAAACTCAGATCAACACAATCCTTCGCTTCAGCTCTTTTGGTCGTACGCGAACACCTCCCTTCAGGACAAGCTTGTTTAAGGATAAACATCGACGCCACAAGAATTGGGAACGTTGCTAGATTCATCAACCATTCTTGTGACGGTGGAAATCTCTCCACTGTTCTGTTGAGAAGCTCAGGAGCGTTGCTTCCTCGGCTCTGTTTCTTTGCAGCAAAGGACATAATCGCAGAGGAGGAGTTAAGTTTCAGTTATGGAGACGTAAGTGTGGCCGGAGAGAACAGAGACGACAAGCTAAACTGCTCTTGTGGTAGTTCCTGCTGTTTGGGAACGTTGCCTTGTGAGAATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

338

Amino Acids

37.0

Weight (kDa)

6.85

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 203 - 307 9.3e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 652
Acc36I ACCTGC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 646
AccII CGCG 5 cut(s) 37, 269, 322, 482, 714
AciI CCGC 7 cut(s) 72, 300, 317, 320, 396, 482, 528
AclI AACGTT 2 cut(s) 777, 995
AclWI GGATC 3 cut(s) 207, 289, 364
AcoI YGGCCR 2 cut(s) 69, 933
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 2 cut(s) 678, 711
AcyI GRCGYC 2 cut(s) 649, 759
AfaI GTAC 3 cut(s) 272, 617, 711
AflIII ACRYGT 2 cut(s) 35, 267
AgsI TTSAA 1 cut(s) 580
AhdI GACNNNNNGTC 1 cut(s) 39
AluBI AGCT 9 cut(s) 53, 338, 476, 500, 628, 698, 737, 840, 958
AluI AGCT 9 cut(s) 53, 338, 476, 500, 628, 698, 737, 840, 958
Alw26I GTCTC 2 cut(s) 915, 942
AlwI GGATC 3 cut(s) 207, 289, 364
AlwNI CAGNNNCTG 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 2 cut(s) 69, 933
ApeKI GCWGC 5 cut(s) 4, 206, 338, 341, 875
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 531
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 12, 182, 421
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 5 cut(s) 16, 193, 325, 328, 887
BccI CCATC 2 cut(s) 257, 481
BceAI ACGGC 1 cut(s) 119
BciVI GTATCC 1 cut(s) 452
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 915, 942
BfaI CTAG 2 cut(s) 366, 783
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 452
BisI GCNGC 7 cut(s) 5, 72, 207, 320, 339, 342, 876
BlsI GCNGC 7 cut(s) 6, 73, 208, 321, 340, 343, 877
Bme1390I CCNGG 1 cut(s) 548
Bme18I GGWCC 1 cut(s) 531
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 422, 515
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 841
Bpu14I TTCGAA 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 548
Bsa29I ATCGAT 2 cut(s) 79, 252
BsaAI YACGTR 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 752
BsaHI GRCGYC 2 cut(s) 649, 759
BsaJI CCNNGG 3 cut(s) 110, 216, 857
Bse8I GATNNNNATC 1 cut(s) 752
BseCI ATCGAT 2 cut(s) 79, 252
BseDI CCNNGG 3 cut(s) 110, 216, 857
BseGI GGATG 3 cut(s) 437, 492, 530
BseJI GATNNNNATC 1 cut(s) 752
BseMII CTCAG 3 cut(s) 396, 685, 855
BseRI GAGGAG 4 cut(s) 300, 303, 911, 914
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 5 cut(s) 16, 193, 325, 328, 887
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 5 cut(s) 37, 269, 322, 482, 714
Bsh1285I CGRYCG 2 cut(s) 72, 79
BshFI GGCC 2 cut(s) 71, 935
BshVI ATCGAT 2 cut(s) 79, 252
BsiEI CGRYCG 2 cut(s) 72, 79
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 3 cut(s) 68, 547, 936
BsiWI CGTACG 1 cut(s) 709
BsmAI GTCTC 2 cut(s) 915, 942
BsmBI CGTCTC 2 cut(s) 915, 942
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 71, 935
BsoBI CYCGRG 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 542
Bsp143I GATC 6 cut(s) 76, 194, 212, 294, 356, 674
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 7 cut(s) 72, 300, 317, 320, 396, 482, 528
BspANI GGCC 2 cut(s) 71, 935
BspCNI CTCAG 3 cut(s) 395, 684, 854
BspDI ATCGAT 2 cut(s) 79, 252
BspFNI CGCG 5 cut(s) 37, 269, 322, 482, 714
BspLI GGNNCC 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 3 cut(s) 207, 289, 364
BspT104I TTCGAA 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 110, 216, 857
BssMI GATC 6 cut(s) 76, 194, 212, 294, 356, 674
BssNI GRCGYC 2 cut(s) 649, 759
BssT1I CCWWGG 2 cut(s) 110, 216
Bst4CI ACNGT 2 cut(s) 809, 826
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 2 cut(s) 649, 759
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 644
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 382, 671, 841
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 437, 492, 530
BstFNI CGCG 5 cut(s) 37, 269, 322, 482, 714
BstKTI GATC 6 cut(s) 79, 197, 215, 297, 359, 677
BstMAI GTCTC 2 cut(s) 915, 942
BstMBI GATC 6 cut(s) 76, 194, 212, 294, 356, 674
BstMCI CGRYCG 2 cut(s) 72, 79
BstMWI GCNNNNNNNGC 4 cut(s) 10, 140, 634, 859
BstSCI CCNGG 1 cut(s) 546
BstUI CGCG 5 cut(s) 37, 269, 322, 482, 714
BstV1I GCAGC 5 cut(s) 16, 193, 325, 328, 887
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 69
Bsu15I ATCGAT 2 cut(s) 79, 252
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 2 cut(s) 71, 935
BsuTUI ATCGAT 2 cut(s) 79, 252
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 437, 492, 530
BtsIMutI CAGTG 2 cut(s) 390, 822
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 531
ClaI ATCGAT 2 cut(s) 79, 252
CseI GACGC 3 cut(s) 43, 212, 767
Csp6I GTAC 3 cut(s) 271, 616, 710
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 1 cut(s) 111
CviQI GTAC 3 cut(s) 271, 616, 710
DdeI CTNAG 3 cut(s) 382, 671, 841
DpnI GATC 6 cut(s) 78, 196, 214, 296, 358, 676
DpnII GATC 6 cut(s) 76, 194, 212, 294, 356, 674
DriI GACNNNNNGTC 1 cut(s) 39
EaeI YGGCCR 2 cut(s) 69, 933
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 486
EciI GGCGGA 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 110, 216
Eco47I GGWCC 1 cut(s) 531
Eco52I CGGCCG 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 678, 711
Eco88I CYCGRG 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 110, 216
ErhI CCWWGG 2 cut(s) 110, 216
Esp3I CGTCTC 2 cut(s) 915, 942
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 112, 887, 918
FatI CATG 1 cut(s) 110
FauI CCCGC 3 cut(s) 307, 475, 521
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 7 cut(s) 5, 72, 207, 320, 339, 342, 876
FokI GGATG 3 cut(s) 444, 499, 537
Fsp4HI GCNGC 7 cut(s) 5, 72, 207, 320, 339, 342, 876
FspBI CTAG 2 cut(s) 366, 783
GluI GCNGC 7 cut(s) 5, 72, 207, 320, 339, 342, 876
HaeIII GGCC 2 cut(s) 71, 935
HapII CCGG 3 cut(s) 68, 547, 936
HgaI GACGC 3 cut(s) 43, 212, 767
Hin1I GRCGYC 2 cut(s) 649, 759
Hin1II CATG 1 cut(s) 114
HindIII AAGCTT 2 cut(s) 51, 735
HinfI GANTC 7 cut(s) 17, 103, 254, 362, 380, 425, 786
HpaII CCGG 3 cut(s) 68, 547, 936
HphI GGTGA 3 cut(s) 12, 182, 421
Hpy166II GTNNAC 2 cut(s) 421, 647
Hpy188I TCNGA 6 cut(s) 58, 89, 294, 361, 535, 674
Hpy188III TCNNGA 7 cut(s) 125, 172, 200, 366, 429, 729, 843
Hpy8I GTNNAC 2 cut(s) 421, 647
Hpy99I CGWCG 2 cut(s) 206, 761
HpyAV CCTTC 4 cut(s) 449, 553, 697, 735
HpyCH4III ACNGT 2 cut(s) 809, 826
HpyCH4IV ACGT 6 cut(s) 400, 643, 649, 777, 924, 995
HpyCH4V TGCA 5 cut(s) 4, 153, 209, 465, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 140, 634, 859
HpyF3I CTNAG 3 cut(s) 382, 671, 841
HpySE526I ACGT 6 cut(s) 400, 643, 649, 777, 924, 995
Hsp92I GRCGYC 2 cut(s) 649, 759
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 6 cut(s) 76, 194, 212, 294, 356, 674
LmnI GCTCC 2 cut(s) 335, 845
LpnPI CCDG 9 cut(s) 81, 163, 414, 560, 638, 714, 828, 949, 994
Lsp1109I GCAGC 5 cut(s) 16, 193, 325, 328, 887
LweI GCATC 2 cut(s) 422, 515
MaeI CTAG 2 cut(s) 366, 783
MaeII ACGT 6 cut(s) 400, 643, 649, 777, 924, 995
MaeIII GTNAC 3 cut(s) 18, 550, 803
MalI GATC 6 cut(s) 78, 196, 214, 296, 358, 676
MboI GATC 6 cut(s) 76, 194, 212, 294, 356, 674
MboII GAAGA 4 cut(s) 43, 503, 592, 610
MflI RGATCY 1 cut(s) 294
MluCI AATT 2 cut(s) 97, 768
MluI ACGCGT 2 cut(s) 35, 267
MlyI GAGTC 4 cut(s) 26, 371, 374, 434
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 132, 321, 324, 438, 445, 731, 867, 889, 892
MseI TTAA 2 cut(s) 743, 905
MslI CAYNNNNRTG 1 cut(s) 801
MspI CCGG 3 cut(s) 68, 547, 936
MspR9I CCNGG 1 cut(s) 548
Mva1269I GAATGC 1 cut(s) 443
MvnI CGCG 5 cut(s) 37, 269, 322, 482, 714
MwoI GCNNNNNNNGC 4 cut(s) 10, 140, 634, 859
NciI CCSGG 1 cut(s) 548
NcoI CCATGG 1 cut(s) 110
NdeII GATC 6 cut(s) 76, 194, 212, 294, 356, 674
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 532
NmeAIII GCCGAG 1 cut(s) 838
NmuCI GTSAC 2 cut(s) 18, 803
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 103, 254, 786
Pfl23II CGTACG 1 cut(s) 709
PkrI GCNGC 7 cut(s) 6, 73, 208, 321, 340, 343, 877
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 4 cut(s) 25, 370, 374, 433
PpsI GAGTC 4 cut(s) 25, 370, 374, 433
Ppu21I YACGTR 1 cut(s) 644
Psp1406I AACGTT 2 cut(s) 777, 995
PspLI CGTACG 1 cut(s) 709
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 294
PvuI CGATCG 1 cut(s) 79
RsaI GTAC 3 cut(s) 272, 617, 711
RsaNI GTAC 3 cut(s) 271, 616, 710
RseI CAYNNNNRTG 1 cut(s) 801
SaqAI TTAA 2 cut(s) 743, 905
SatI GCNGC 7 cut(s) 5, 72, 207, 320, 339, 342, 876
Sau3AI GATC 6 cut(s) 76, 194, 212, 294, 356, 674
Sau96I GGNCC 1 cut(s) 531
SchI GAGTC 4 cut(s) 26, 371, 374, 434
ScrFI CCNGG 1 cut(s) 548
SfaNI GCATC 2 cut(s) 422, 515
Sfr274I CTCGAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 2 cut(s) 97, 768
SsiI CCGC 7 cut(s) 72, 300, 317, 320, 396, 482, 528
SspMI CTAG 2 cut(s) 366, 783
StyD4I CCNGG 1 cut(s) 546
StyI CCWWGG 2 cut(s) 110, 216
TaaI ACNGT 2 cut(s) 809, 826
TaiI ACGT 6 cut(s) 403, 646, 652, 780, 927, 998
TaqI TCGA 7 cut(s) 79, 124, 173, 201, 252, 542, 756
TasI AATT 2 cut(s) 97, 768
TauI GCSGC 2 cut(s) 74, 322
TfiI GAWTC 3 cut(s) 103, 254, 786
Tru1I TTAA 2 cut(s) 743, 905
Tru9I TTAA 2 cut(s) 743, 905
TscAI CASTG 2 cut(s) 390, 829
TseFI GTSAC 2 cut(s) 18, 803
TseI GCWGC 5 cut(s) 4, 206, 338, 341, 875
Tsp45I GTSAC 2 cut(s) 18, 803
TspDTI ATGAA 4 cut(s) 265, 294, 363, 778
TspRI CASTG 2 cut(s) 390, 829
VpaK11BI GGWCC 1 cut(s) 531
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 646
XspI CTAG 2 cut(s) 366, 783
ZraI GACGTC 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.