Rorug05G0230800

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000680
Physical Location & Seq
Forward (+)
24061945 .. 24067152
5208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0230800.1

Sequence Viewer

Length: 1095 bp
ATGTTGGGAATTTATCTGCAAGCCTCTTCCATCATATCTTTCCTCTTCTCTATCATCATATCTGTAATCTGGTTCTACACCGAGCCCATACTCATCTTACTCCAGCAAGATCCTCAAATTTCGAAATCTGCTGCGATTTATATCAAGTATCTGATTCCGGGATTATTTGCATATGGATTCTTGAATAACATATTGAGATTTCTTCAGACACAATCTGTTGTCATGCCATTGGTTTTTCTCTCAGTGATCCCAGTGGTTCTTCATATTGGTATTGCATACGGTTTGGTACATTGGACAGCTCTTGGGTTCAAGGGAGCTCCACTAGCAGCTTCGATTTCATTATGGATATCGGTCCTCATGCTGGCCACGTATGTTGTTCATGCTAAGAAGTTTGAGCACACATGGGAAGGATTTTCATTAGAATCATTCCATTATGTCCTGACTGACTTGAAACTTGCCCTCCCCTCTGCAGCAATGGTTTGCTTGGAGTACTGGGCTTTTGAGATTCTGGTGCTCTTGGCAGGATTAATGCCAAACTCGGAACAAACCACTTCACTAATTGCAATGTGTGTGAATACAGAAACAATTGCTTACATGCTTACATATGGCCTCAGTGCTGCAGCAAGCACAAGGGTGTCAAATGAATTGGGAGCAGGCAAACCGGACCGAGCTAAGAATGCAATGGCTGTGACTCTGAAGCTCTCTGTGCTTCTTGGTTTCTTAGTTGTTCTGGTGCTAGCACTTGGTCACAATATCTGGGCTGGCTTCTTCAGTGACAGCACTGCAATAATAAAGGAATTTGCTTCCATGACACCATTTCTTGCAATTTCAATAATGCTGGATTCAGTGCAAGGTGTCTTATCAGGTGTGGCTAGAGGATGTGGGTGGCAGCACTTGGCAGTGTATGCGAACTTGGGTACATTCTATTTGATTGGTGTGCCGATTGCATGTCTTCTTGGATTTAAGTTGACACTATATGCCAAGGGTCTGTGGATTGGTTTAATCTGTGGTCTTTCCTGTCAAGCTGGGGCACTTATGTTGATTACATTGCGCACAAAATGGACTGAATTAGATTTAACTCATAATGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

364

Amino Acids

39.67

Weight (kDa)

7.64

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 2 - 93 1e-13 MatE
MatE PF01554 155 - 316 1.1e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1052
AclWI GGATC 2 cut(s) 104, 241
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 3 cut(s) 9, 117, 797
AcuI CTGAAG 3 cut(s) 188, 716, 754
AfaI GTAC 3 cut(s) 288, 491, 919
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 4 cut(s) 184, 310, 451, 831
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 6 cut(s) 299, 317, 329, 671, 700, 1025
AluI AGCT 6 cut(s) 299, 317, 329, 671, 700, 1025
Alw21I GWGCWC 3 cut(s) 319, 399, 516
AlwI GGATC 2 cut(s) 104, 241
AoxI GGCC 2 cut(s) 363, 607
ApeKI GCWGC 7 cut(s) 131, 326, 470, 617, 620, 889, 1088
ApoI RAATTY 3 cut(s) 9, 117, 797
AseI ATTAAT 1 cut(s) 527
AspLEI GCGC 1 cut(s) 1053
AspS9I GGNCC 2 cut(s) 352, 664
AsuC2I CCSGG 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 736
AvaII GGWCC 2 cut(s) 352, 664
BaeGI GKGCMC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 2 cut(s) 87, 319
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 3 cut(s) 319, 399, 516
BbvI GCAGC 6 cut(s) 118, 338, 482, 604, 632, 901
BccI CCATC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 3 cut(s) 323, 737, 873
BfmI CTRYAG 2 cut(s) 468, 618
BisI GCNGC 7 cut(s) 132, 327, 471, 618, 621, 890, 1089
BlsI GCNGC 7 cut(s) 133, 328, 472, 619, 622, 891, 1090
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 352, 664
BmgT120I GGNCC 2 cut(s) 352, 664
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 2 cut(s) 245, 502
BmtI GCTAGC 1 cut(s) 740
BmuI ACTGGG 2 cut(s) 245, 502
BpiI GAAGAC 1 cut(s) 944
BpmI CTGGAG 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 981
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 251, 497
Bse3DI GCAATG 4 cut(s) 480, 570, 687, 1046
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 981
BseGI GGATG 1 cut(s) 884
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 4 cut(s) 480, 570, 687, 1046
BseMII CTCAG 2 cut(s) 255, 625
BseNI ACTGG 2 cut(s) 251, 497
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 6 cut(s) 118, 338, 482, 604, 632, 901
BseYI CCCAGC 1 cut(s) 1025
BshFI GGCC 2 cut(s) 365, 609
BsiHKAI GWGCWC 3 cut(s) 319, 399, 516
BsiSI CCGG 2 cut(s) 158, 662
BslI CCNNNNNNNGG 1 cut(s) 361
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 2 cut(s) 365, 609
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 5 cut(s) 87, 319, 399, 516, 1033
Bsp143I GATC 2 cut(s) 109, 246
BspANI GGCC 2 cut(s) 365, 609
BspCNI CTCAG 2 cut(s) 254, 624
BspMAI CTGCAG 2 cut(s) 472, 622
BspOI GCTAGC 1 cut(s) 740
BspPI GGATC 2 cut(s) 104, 241
BspT104I TTCGAA 1 cut(s) 122
BsrDI GCAATG 4 cut(s) 480, 570, 687, 1046
BsrI ACTGG 2 cut(s) 251, 497
BssECI CCNNGG 1 cut(s) 981
BssMI GATC 2 cut(s) 109, 246
BssT1I CCWWGG 1 cut(s) 981
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 31, 50
BstAPI GCANNNNNTGC 1 cut(s) 905
BstBAI YACGTR 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 6 cut(s) 21, 363, 625, 655, 738, 763
BstDEI CTNAG 5 cut(s) 241, 384, 611, 672, 721
BstF5I GGATG 1 cut(s) 884
BstHHI GCGC 1 cut(s) 1053
BstKTI GATC 2 cut(s) 112, 249
BstMBI GATC 2 cut(s) 109, 246
BstMWI GCNNNNNNNGC 4 cut(s) 323, 677, 706, 905
BstNSI RCATGY 2 cut(s) 598, 951
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 2 cut(s) 468, 618
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 6 cut(s) 118, 338, 482, 604, 632, 901
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 365, 609
BtsCI GGATG 1 cut(s) 884
BtsI GCAGTG 2 cut(s) 780, 906
BtsIMutI CAGTG 7 cut(s) 249, 258, 619, 778, 780, 852, 906
Cac8I GCNNGC 6 cut(s) 21, 363, 625, 655, 738, 763
CfoI GCGC 1 cut(s) 1053
Cfr13I GGNCC 2 cut(s) 352, 664
CpoI CGGWCCG 1 cut(s) 664
Csp6I GTAC 3 cut(s) 287, 490, 918
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CspI CGGWCCG 1 cut(s) 664
CviAII CATG 7 cut(s) 223, 358, 380, 402, 595, 808, 948
CviQI GTAC 3 cut(s) 287, 490, 918
DdeI CTNAG 5 cut(s) 241, 384, 611, 672, 721
DpnI GATC 2 cut(s) 111, 248
DpnII GATC 2 cut(s) 109, 246
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 31, 50
EarI CTCTTC 2 cut(s) 31, 50
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 981
Eco24I GRGCYC 2 cut(s) 87, 319
Eco32I GATATC 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 352, 664
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 3 cut(s) 188, 716, 754
EcoICRI GAGCTC 1 cut(s) 317
EcoRV GATATC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 981
EcoT38I GRGCYC 2 cut(s) 87, 319
ErhI CCWWGG 1 cut(s) 981
FaeI CATG 7 cut(s) 226, 361, 383, 405, 598, 811, 951
FatI CATG 7 cut(s) 222, 357, 379, 401, 594, 807, 947
FauNDI CATATG 2 cut(s) 172, 604
Fnu4HI GCNGC 7 cut(s) 132, 327, 471, 618, 621, 890, 1089
FokI GGATG 1 cut(s) 891
FriOI GRGCYC 2 cut(s) 87, 319
Fsp4HI GCNGC 7 cut(s) 132, 327, 471, 618, 621, 890, 1089
FspBI CTAG 3 cut(s) 323, 737, 873
FspI TGCGCA 1 cut(s) 1052
GlaI GCGC 1 cut(s) 1052
GluI GCNGC 7 cut(s) 132, 327, 471, 618, 621, 890, 1089
GsaI CCCAGC 1 cut(s) 1029
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 365, 609
HapII CCGG 2 cut(s) 158, 662
HhaI GCGC 1 cut(s) 1053
Hin1II CATG 7 cut(s) 226, 361, 383, 405, 598, 811, 951
Hin6I GCGC 1 cut(s) 1051
HinP1I GCGC 1 cut(s) 1051
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HinfI GANTC 6 cut(s) 154, 177, 422, 505, 691, 842
HpaII CCGG 2 cut(s) 158, 662
Hpy166II GTNNAC 1 cut(s) 969
Hpy188I TCNGA 4 cut(s) 153, 207, 541, 696
Hpy188III TCNNGA 2 cut(s) 181, 439
Hpy8I GTNNAC 1 cut(s) 969
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 677, 706, 905
HpyF3I CTNAG 5 cut(s) 241, 384, 611, 672, 721
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 7 cut(s) 226, 361, 383, 405, 598, 811, 951
HspAI GCGC 1 cut(s) 1051
Kzo9I GATC 2 cut(s) 109, 246
LmnI GCTCC 3 cut(s) 314, 322, 650
Lsp1109I GCAGC 6 cut(s) 118, 338, 482, 604, 632, 901
MaeI CTAG 3 cut(s) 323, 737, 873
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 688, 746, 773
MalI GATC 2 cut(s) 111, 248
MboI GATC 2 cut(s) 109, 246
MboII GAAGA 6 cut(s) 18, 37, 194, 251, 760, 944
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 5 cut(s) 87, 319, 399, 516, 1033
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 8 cut(s) 9, 117, 558, 585, 644, 797, 825, 1067
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 685
MnlI CCTC 8 cut(s) 34, 53, 123, 365, 470, 475, 620, 869
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 527, 963, 1001, 1076
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 158, 662
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 682
MwoI GCNNNNNNNGC 4 cut(s) 323, 677, 706, 905
NciI CCSGG 1 cut(s) 159
NdeI CATATG 2 cut(s) 172, 604
NdeII GATC 2 cut(s) 109, 246
NheI GCTAGC 1 cut(s) 736
NlaIII CATG 7 cut(s) 226, 361, 383, 405, 598, 811, 951
NmuCI GTSAC 3 cut(s) 688, 746, 773
NsbI TGCGCA 1 cut(s) 1052
NspI RCATGY 2 cut(s) 598, 951
NspV TTCGAA 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 632
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 5 cut(s) 154, 177, 422, 505, 842
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 7 cut(s) 133, 328, 472, 619, 622, 891, 1090
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
Ppu21I YACGTR 1 cut(s) 369
PshBI ATTAAT 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 1025
PspPI GGNCC 2 cut(s) 352, 664
PstI CTGCAG 2 cut(s) 472, 622
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 3 cut(s) 288, 491, 919
RsaNI GTAC 3 cut(s) 287, 490, 918
RseI CAYNNNNRTG 1 cut(s) 632
Rsr2I CGGWCCG 1 cut(s) 664
RsrII CGGWCCG 1 cut(s) 664
SacI GAGCTC 1 cut(s) 319
SaqAI TTAA 4 cut(s) 527, 963, 1001, 1076
SatI GCNGC 7 cut(s) 132, 327, 471, 618, 621, 890, 1089
Sau3AI GATC 2 cut(s) 109, 246
Sau96I GGNCC 2 cut(s) 352, 664
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 5 cut(s) 87, 319, 399, 516, 1033
SetI ASST 9 cut(s) 301, 319, 331, 371, 673, 702, 856, 868, 1027
SfcI CTRYAG 2 cut(s) 468, 618
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 2 cut(s) 352, 664
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 8 cut(s) 9, 117, 558, 585, 644, 797, 825, 1067
SspMI CTAG 3 cut(s) 323, 737, 873
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 981
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 371
TaqI TCGA 2 cut(s) 122, 332
TaqII GACCGA 2 cut(s) 340, 681
TasI AATT 8 cut(s) 9, 117, 558, 585, 644, 797, 825, 1067
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 5 cut(s) 154, 177, 422, 505, 842
Tru1I TTAA 4 cut(s) 527, 963, 1001, 1076
Tru9I TTAA 4 cut(s) 527, 963, 1001, 1076
TscAI CASTG 7 cut(s) 249, 258, 619, 778, 787, 852, 906
TseFI GTSAC 3 cut(s) 688, 746, 773
TseI GCWGC 7 cut(s) 131, 326, 470, 617, 620, 889, 1088
Tsp45I GTSAC 3 cut(s) 688, 746, 773
TspDTI ATGAA 5 cut(s) 251, 327, 368, 405, 657
TspRI CASTG 7 cut(s) 249, 258, 619, 778, 787, 852, 906
VpaK11BI GGWCC 2 cut(s) 352, 664
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 3 cut(s) 9, 117, 797
XceI RCATGY 2 cut(s) 598, 951
XspI CTAG 3 cut(s) 323, 737, 873
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.