Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Reverse (-)

31803328 .. 31804254

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG289600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGCTTTTTCCTTCATCAATGCACTTACTCTCACACCACTCGTCCTTTATGTCTCCAGGTACCGATTTCCTTCTTAAACCCCTTTTCATTCGTGGGTTTTCTGGATCACTACATCTCCTTCTGTTATTTGTGTTGCTTATCTCTTGGTTGTGGAAGAAATTCAAGGTGGGTGATGGGGGAGGGGCCCCAAAAGAGGGGTCTAGGAATAGGACAACTCTGTACTACAGGCACACTTTAATATGTTGTCTTGTTGTTTCTGCTGTTAGTGTTGGCTTTTGTTTATTCAACTACTTTTCCTGGTATAAACATGTCTGGTCTGAAGAAAAGCTAGTGACCCTTTTTGATTTAGCAATTAGAACACTTAGTTGGGGTGTAGTTTTTGTTTACTTGCATACCCACTTCTCTAGTTGTGATGAACCAAAGTTTCCATTCTTACTCAGAGTTTGGTGGGGTTTCTACTTTTCTTTATCTTGCTATTGTCTTGTCATAGACATTGTTCTTTACCAAAAACACGTTGCCTTACCCGTTCAATCTCTAGTTTCTGATGCTGCCTTCCTTGTCTCTGCTTTGTTCTTTATATATGTGGTGTTTATTGGGACGAAAGAGGGTAGAGATACCCTTCTTGTGGAACCCCTTTTGAATGGTAGTAGAAATTCTAGTATAGGTAACACTGCAGAATCAAATAAGTCCAAAGGGGATGCAACTGTGAAAACCCCTTATTCAAATGCTGGGATTTTCAGCATCCTCACCTTTTCTTGGATGAGTCCTTTAATCGCGGTGGGTAATAAGAAAACATTAGACCTTGAAGATGTTCCTGAACTAGACAAGAGTGATAGTGTAGTTGGGTCCTTTCCAGTTTTTAGAAATAAGCTCGAGTCAGAGTGTAGTACTCTTAGCAGATTGACCACACTTCATCTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

308

Amino Acids

34.7

Weight (kDa)

8.4

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	779
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	161, 655
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	3 cut(s)	64, 224, 892
AfiI	CCNNNNNNNGG	4 cut(s)	196, 197, 628, 759
AflIII	ACRYGT	2 cut(s)	310, 514
AgsI	TTSAA	6 cut(s)	166, 289, 533, 643, 726, 809
AjnI	CCWGG	2 cut(s)	58, 299
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	3 cut(s)	7, 331, 874
AluI	AGCT	3 cut(s)	7, 331, 874
Alw26I	GTCTC	2 cut(s)	60, 568
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	1 cut(s)	186
ApaI	GGGCCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	161, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	2 cut(s)	161, 813
Asp718I	GGTACC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	186, 187, 849
AsuHPI	GGTGA	2 cut(s)	185, 742
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	60, 301
BcoDI	GTCTC	2 cut(s)	60, 568
BfaI	CTAG	6 cut(s)	204, 332, 408, 539, 660, 824
BfmI	CTRYAG	2 cut(s)	226, 675
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmcAI	AGTACT	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	60, 301
Bme18I	GGWCC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	3 cut(s)	186, 187, 849
BmiI	GGNNCC	6 cut(s)	64, 187, 188, 189, 633, 850
BmrFI	CCNGG	2 cut(s)	60, 301
BmsI	GCATC	3 cut(s)	538, 691, 753
BpmI	CTGGAG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 197, 628, 759
Bse1I	ACTGG	1 cut(s)	857
BseBI	CCWGG	2 cut(s)	60, 301
BseGI	GGATG	3 cut(s)	706, 744, 768
BseLI	CCNNNNNNNGG	4 cut(s)	196, 197, 628, 759
BseMII	CTCAG	1 cut(s)	454
BseNI	ACTGG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	731
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	4 cut(s)	196, 197, 628, 759
BsmAI	GTCTC	2 cut(s)	60, 568
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	875
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	6 cut(s)	64, 187, 188, 189, 633, 850
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	857
BssMI	GATC	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	60, 301
Bst4CI	ACNGT	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	365, 440, 896
BstF5I	GGATG	3 cut(s)	706, 744, 768
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	60, 568
BstMBI	GATC	1 cut(s)	107
BstNI	CCWGG	2 cut(s)	60, 301
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	58, 299
BstSFI	CTRYAG	2 cut(s)	226, 675
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	706, 744, 768
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	186, 187, 849
Csp6I	GTAC	3 cut(s)	63, 223, 891
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	5 cut(s)	7, 188, 276, 331, 874
CviKI_1	RGCY	5 cut(s)	7, 188, 276, 331, 874
CviQI	GTAC	3 cut(s)	63, 223, 891
DdeI	CTNAG	3 cut(s)	365, 440, 896
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	875
EcoO109I	RGGNCCY	3 cut(s)	186, 187, 849
EcoRII	CCWGG	2 cut(s)	58, 299
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	1 cut(s)	314
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	713, 731, 775
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	6 cut(s)	204, 332, 408, 539, 660, 824
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	3 cut(s)	680, 766, 878
HphI	GGTGA	2 cut(s)	185, 742
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	322, 443, 547, 883
Hpy188III	TCNNGA	2 cut(s)	105, 818
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	5 cut(s)	24, 83, 131, 565, 632
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	4 cut(s)	25, 394, 677, 704
HpyF3I	CTNAG	3 cut(s)	365, 440, 896
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	1 cut(s)	314
KpnI	GGTACC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	3 cut(s)	538, 691, 753
MaeI	CTAG	6 cut(s)	204, 332, 408, 539, 660, 824
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	334, 668
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	3 cut(s)	169, 335, 821
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	161, 354, 655
MlyI	GAGTC	2 cut(s)	775, 887
MnlI	CCTC	4 cut(s)	176, 190, 601, 758
MroXI	GAANNNNTTC	2 cut(s)	161, 813
MseI	TTAA	3 cut(s)	78, 239, 773
MspR9I	CCNGG	2 cut(s)	60, 301
MvaI	CCWGG	2 cut(s)	60, 301
MvnI	CGCG	1 cut(s)	779
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	6 cut(s)	64, 187, 188, 189, 633, 850
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	875
PciI	ACATGT	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	161, 813
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	774, 886
PpsI	GAGTC	2 cut(s)	774, 886
PpuMI	RGGWCCY	1 cut(s)	849
PscI	ACATGT	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	58, 299
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	2 cut(s)	58, 299
PspN4I	GGNNCC	6 cut(s)	64, 187, 188, 189, 633, 850
PspOMI	GGGCCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	186, 187, 849
PspPPI	RGGWCCY	1 cut(s)	849
PspXI	VCTCGAGB	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	679
RsaI	GTAC	3 cut(s)	64, 224, 892
RsaNI	GTAC	3 cut(s)	63, 223, 891
SaqAI	TTAA	3 cut(s)	78, 239, 773
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	3 cut(s)	186, 187, 849
ScaI	AGTACT	1 cut(s)	892
SchI	GAGTC	2 cut(s)	775, 887
ScrFI	CCNGG	2 cut(s)	60, 301
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	9 cut(s)	9, 64, 171, 333, 519, 670, 755, 807, 876
SfaNI	GCATC	3 cut(s)	538, 691, 753
SfcI	CTRYAG	2 cut(s)	226, 675
Sfr274I	CTCGAG	1 cut(s)	875
SinI	GGWCC	1 cut(s)	849
SlaI	CTCGAG	1 cut(s)	875
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	3 cut(s)	161, 354, 655
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	6 cut(s)	204, 332, 408, 539, 660, 824
StyD4I	CCNGG	2 cut(s)	58, 299
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	876
TasI	AATT	3 cut(s)	161, 354, 655
TatI	WGTACW	2 cut(s)	222, 890
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	3 cut(s)	78, 239, 773
Tru9I	TTAA	3 cut(s)	78, 239, 773
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	6, 79, 432, 905
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	2 cut(s)	161, 655
XceI	RCATGY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XhoI	CTCGAG	1 cut(s)	875
XmnI	GAANNNNTTC	2 cut(s)	161, 813
XspI	CTAG	6 cut(s)	204, 332, 408, 539, 660, 824
ZrmI	AGTACT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.