Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Reverse (-)

26884014 .. 26885169

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATAGAGAACGATATGATAAGGTGATTGAAGCATGTTCTTTGAGTAAAGATCTGGAGATACTTTCATTCGGTGATCAGACCGTCATTGGAGAACGCGGCATCAATTTGAGTGGTGGACAAAAGCAAAGAATACATATTGCACGCGCTCTCTACCAAGATGCGGACATCTATCTGTTTGATGATCCTTTTAGTGCTGTCGATGCACACACAGGGTCACATCTCTTTAAGGAAGCTCTACGAGGGCTTTTATGTTCTAAATCGGTTATATATGTAACCCATCAAGTTGAGTTCTTACCTTCTGCTGATCTTACACTGGTCATGAAAGATGGGAGAATCAGCCAAGCTGGAAAATATAATGATATCCTCATCTCTGGAACAGATTTCAGGGAGCTTATAGGTGCGCATCAAGAGTCTCTGGCAGTAGTTGGGTCGGCTGATGCCAGTTCTGTTTCTGAAAACTCAGCTTTAGACGAAGAAAATGGTGTTGTGAGAGATGATATTGGTTTCGACGGGAAACAAGAAAGTCAAGATCTGAAGAACGATAAATTAGATTCTGGGGAGCCCCAAAGACAATTTGTTCAAGAGGAAGAGAGGGCGAAAGGTAGCGTCGCTTTGGATGTATACTGGAAATATATCACACTGGCATACGGAGGAGCTCTTGTGCCTTTCATATTGTTGGGGCAAATTCTCTTTCAGCTTCTACAGATTGGAAGTAACTACTGGATGGCTTGGGCTACTCCTATTTCTGAGGATGTGCAAGCTCCTGTGAAACTTTCTACGTTAATGGTTGTGTATGTTGCTTTGGCATTTGGAAGTTCCCTCTGCATTCTTGTTAGAGCCACGCTTCTTGTCACGGCTGGTTACAAGACTGCTACTGAACTGTTTCATAAAATGCATCACTGCATTTTCCGTTCTCCAATGTCTTTTAAAATTGCAAAAACTTGTTCAAAAACTTGTATATATTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

324

Amino Acids

35.81

Weight (kDa)

5.31

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	23 - 64	1.7e-08	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	2 cut(s)	99, 147
AciI	CCGC	2 cut(s)	99, 164
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	32, 584, 951
AluBI	AGCT	7 cut(s)	236, 347, 394, 467, 659, 700, 764
AluI	AGCT	7 cut(s)	236, 347, 394, 467, 659, 700, 764
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	149, 406
AsuHPI	GGTGA	2 cut(s)	37, 86
BanII	GRGCYC	2 cut(s)	567, 661
Bbv12I	GWGCWC	1 cut(s)	661
BccI	CCATC	3 cut(s)	288, 323, 721
BceAI	ACGGC	1 cut(s)	873
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	704
BglII	AGATCT	2 cut(s)	52, 532
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	6 cut(s)	111, 151, 193, 415, 430, 907
BpmI	CTGGAG	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	5 cut(s)	321, 444, 632, 648, 728
BseGI	GGATG	3 cut(s)	625, 732, 760
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	477, 741
BseNI	ACTGG	5 cut(s)	321, 444, 632, 648, 728
BseRI	GAGGAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	99, 147
BsiHKAI	GWGCWC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	828
Bsp1286I	GDGCHC	2 cut(s)	567, 661
Bsp143I	GATC	5 cut(s)	52, 76, 184, 307, 532
BspACI	CCGC	2 cut(s)	99, 164
BspCNI	CTCAG	2 cut(s)	476, 742
BspFNI	CGCG	2 cut(s)	99, 147
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	5 cut(s)	321, 444, 632, 648, 728
BssMI	GATC	5 cut(s)	52, 76, 184, 307, 532
BssNAI	GTATAC	1 cut(s)	625
Bst1107I	GTATAC	1 cut(s)	625
Bst4CI	ACNGT	2 cut(s)	85, 885
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	145, 762
BstDEI	CTNAG	2 cut(s)	463, 750
BstF5I	GGATG	3 cut(s)	625, 732, 760
BstFNI	CGCG	2 cut(s)	99, 147
BstHHI	GCGC	2 cut(s)	149, 406
BstKTI	GATC	5 cut(s)	55, 79, 187, 310, 535
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	5 cut(s)	52, 76, 184, 307, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	704
BstUI	CGCG	2 cut(s)	99, 147
BstX2I	RGATCY	2 cut(s)	52, 532
BstYI	RGATCY	2 cut(s)	52, 532
BstZ17I	GTATAC	1 cut(s)	625
BtsCI	GGATG	3 cut(s)	625, 732, 760
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	3 cut(s)	314, 641, 901
Cac8I	GCNNGC	2 cut(s)	145, 762
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	2 cut(s)	149, 406
CseI	GACGC	1 cut(s)	598
CspCI	CAANNNNNGTGG	4 cut(s)	94, 129, 832, 867
CviAII	CATG	2 cut(s)	36, 322
DdeI	CTNAG	2 cut(s)	463, 750
DpnI	GATC	5 cut(s)	54, 78, 186, 309, 534
DpnII	GATC	5 cut(s)	52, 76, 184, 307, 532
DraI	TTTAAA	1 cut(s)	931
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	659
Eco24I	GRGCYC	2 cut(s)	567, 661
Eco32I	GATATC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	659
EcoRV	GATATC	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	900
EcoT38I	GRGCYC	2 cut(s)	567, 661
FaeI	CATG	2 cut(s)	39, 325
FatI	CATG	2 cut(s)	35, 321
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	3 cut(s)	632, 739, 767
FriOI	GRGCYC	2 cut(s)	567, 661
Fsp4HI	GCNGC	1 cut(s)	100
FspAI	RTGCGCAY	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	2 cut(s)	148, 405
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	2 cut(s)	149, 406
Hin1II	CATG	2 cut(s)	39, 325
Hin6I	GCGC	2 cut(s)	147, 404
HinP1I	GCGC	2 cut(s)	147, 404
HinfI	GANTC	3 cut(s)	336, 413, 554
HphI	GGTGA	2 cut(s)	37, 86
Hpy166II	GTNNAC	2 cut(s)	119, 625
Hpy188I	TCNGA	4 cut(s)	81, 457, 537, 751
Hpy188III	TCNNGA	6 cut(s)	56, 322, 375, 410, 530, 584
Hpy8I	GTNNAC	2 cut(s)	119, 625
Hpy99I	CGWCG	2 cut(s)	515, 614
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	2 cut(s)	85, 885
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	7 cut(s)	143, 206, 760, 828, 898, 906, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	463, 750
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	2 cut(s)	39, 325
HspAI	GCGC	2 cut(s)	147, 404
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	52, 76, 184, 307, 532
LmnI	GCTCC	4 cut(s)	391, 562, 656, 769
LweI	GCATC	6 cut(s)	111, 151, 193, 415, 430, 907
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	5 cut(s)	216, 274, 716, 853, 863
MalI	GATC	5 cut(s)	54, 78, 186, 309, 534
MboI	GATC	5 cut(s)	52, 76, 184, 307, 532
MboII	GAAGA	3 cut(s)	488, 550, 602
MflI	RGATCY	2 cut(s)	52, 532
MhlI	GDGCHC	2 cut(s)	567, 661
MluCI	AATT	5 cut(s)	106, 548, 575, 687, 933
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	7 cut(s)	236, 377, 580, 588, 647, 745, 833
Mph1103I	ATGCAT	1 cut(s)	900
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	228, 785, 930
Mva1269I	GAATGC	1 cut(s)	828
MvnI	CGCG	2 cut(s)	99, 147
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	5 cut(s)	52, 76, 184, 307, 532
NlaIII	CATG	2 cut(s)	39, 325
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	216, 853
NsbI	TGCGCA	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	336, 554
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	564
PsuI	RGATCY	2 cut(s)	52, 532
SacI	GAGCTC	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	228, 785, 930
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	5 cut(s)	52, 76, 184, 307, 532
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	567, 661
SfaNI	GCATC	6 cut(s)	111, 151, 193, 415, 430, 907
SfcI	CTRYAG	1 cut(s)	704
Sse9I	AATT	5 cut(s)	106, 548, 575, 687, 933
SsiI	CCGC	2 cut(s)	99, 164
SstI	GAGCTC	1 cut(s)	661
TaaI	ACNGT	2 cut(s)	85, 885
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	2 cut(s)	201, 510
TasI	AATT	5 cut(s)	106, 548, 575, 687, 933
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	336, 554
Tru1I	TTAA	3 cut(s)	228, 785, 930
Tru9I	TTAA	3 cut(s)	228, 785, 930
TscAI	CASTG	3 cut(s)	321, 648, 908
TseFI	GTSAC	2 cut(s)	216, 853
Tsp45I	GTSAC	2 cut(s)	216, 853
TspDTI	ATGAA	5 cut(s)	57, 338, 661, 878, 957
TspGWI	ACGGA	2 cut(s)	666, 902
TspRI	CASTG	3 cut(s)	321, 648, 908
XapI	RAATTY	1 cut(s)	687
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.