Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

51374714 .. 51375158

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG392100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCATTCTTCGATGCCACTCCAAGTGGAAGAATCTTAAACAGAGCTTCTACAGACCAAAATGCATTGGATAAGAACATATCAAATCAAGTTGCCTCCTTTTCCTTCACAGTGATACGGCTTTTAGGAATTATTGCCGTGATGTCTCAGGTGGCATGGCAGGTTTCCATCATATTTATACCTGTGATTACAGCCTGTGTTTGGTATCAGGTAATGCTTCTGACTTTGTCAGAATTCTGTTACTTGGTGTGTTCTGCTGATCCATATGTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

91

Amino Acids

10.12

Weight (kDa)

4.78

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 73	4.3e-10	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	233
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	122, 134
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	4
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	254
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	151
CviAII	CATG	2 cut(s)	156, 273
CviJI	RGCY	3 cut(s)	47, 121, 194
CviKI_1	RGCY	3 cut(s)	47, 121, 194
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	67
FaeI	CATG	2 cut(s)	159, 276
FaiI	YATR	7 cut(s)	80, 157, 173, 179, 265, 267, 274
FatI	CATG	2 cut(s)	155, 272
FauNDI	CATATG	1 cut(s)	265
Hin1II	CATG	2 cut(s)	159, 276
HinfI	GANTC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	222, 232
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	159, 276
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	134, 146, 194, 195, 208
LweI	GCATC	1 cut(s)	4
MaeIII	GTNAC	2 cut(s)	239, 268
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	42
MluCI	AATT	2 cut(s)	129, 233
MnlI	CCTC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	38
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	159, 276
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	259
SetI	ASST	5 cut(s)	49, 153, 165, 184, 213
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	51
Sse9I	AATT	2 cut(s)	129, 233
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	129, 233
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.