RchiOBHm_Chr5g0037441

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
31893496 .. 31895327
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31615

Sequence Viewer

Length: 1389 bp
ATGGGAGAAGTTCCCAAGATATATGGGACTCTTAAGTTGTGTGGGACAAAGGCCTATGTTTCTCAGTCACCATGGATACAGAGTGGTAAGATAGAACAAAACATTTTGTTTGGTAAAGAGATGGACAGAGAAAGGTACGAGGTGGTTCTTGAAGCATGTTCGTTGAAGAAGGACCTGGAAATTCTTTCATTTGGTGATCAGATGGTTATAGGGGAAAGGGGAATCAATTTAAGTGGAGGTCAGAAGCAAAGAATACAAATTGCACGAGCTTTGTACCAAGATGCTAATATCTATCTGTTTGATGATCCTTTTAGTGCTGAATGCTTGATGGGCCTCTTGAGTTCCAAAATAGTAATCTATGTCACTCATCAAGTGGAGTTCTTACATGTTGCTGATATTGTCTTCGTCATGAAAGACGGAAAGTTCACTCAAGCTGGAAAGTTCAATGACATTCTTAATTTAGGAACTGATTTTATGGATCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTCTGTTGGGGTAGGGCCGGTTGAAAAAACAAGCATCAGCAAAGAAGATAACAATTCGGCTAGTACTACTGGGGCTGTCCAAAAAGTAGACAACAGAGATGTTCAAGATAGTAAAATAGATGATTTAGGCGTGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTTTCAGTGTACTGGAAATACATTACCACAGCGCATGGAGGAGCTCTCTTGCCTTTTATATTACTTGCACAGATTCTCTTTCAACTCCTTCAAATTGGAAGCAATTCCTGGATGGCTTGGACAACTCTTGTGTCTGCAGATGTGAAACCAACTGTTACAAGCTCTACGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTTTGTATCCTTTTTAGATCTCTGCTTCTTGCAACAGCTGGGTACAAGACAGCCACTATAATCTTTTATAAAATGCACTTGTGCATATTCCGTGCTCCCATGTCATTCTCCGATGCCACTCCAAGTAGACGAATCTTAAACAGAGCTTCTACAGACCAAAATGCAGTGGACATGAACATTTCAAATCAAATTGGGGCCTTTGCCTTCTCAATGATACAGCTTTTAGGAATTATTGCAGTGATGTCTCAGGTGGCATGGCAGGTTTTCATCATATTTATACATGTGATTGCAGCCTGTGTTTGGTATCAGGTAATCCTTCTGACTTTGTCAGAATTCTGTTATTTTTTGTGTTTGCTGATCCATATGTCACATGAAATCTATTTTGAAACAAATAATGTCACTAATTCTGGCTTCTCGCAATTTGTTTTGTTATGCGTTTGCATTATCATTGTTCATGGCTTGTACATGCTCACTTGTTAG

Protein Analysis

462

Amino Acids

51.28

Weight (kDa)

5.75

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 18 - 104 2.9e-09 ABC transporter
ABC_membrane PF00664 255 - 409 7.7e-10 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 875, 978
Acc36I ACCTGC 1 cut(s) 1159
AccI GTMKAC 2 cut(s) 606, 1036
AclWI GGATC 3 cut(s) 299, 486, 1261
AcsI RAATTY 2 cut(s) 180, 1241
AfaI GTAC 6 cut(s) 137, 275, 583, 713, 953, 1373
AfiI CCNNNNNNNGG 1 cut(s) 1209
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 2 cut(s) 385, 1189
AjnI CCWGG 2 cut(s) 174, 809
AluBI AGCT 9 cut(s) 269, 434, 503, 664, 746, 864, 947, 1055, 1129
AluI AGCT 9 cut(s) 269, 434, 503, 664, 746, 864, 947, 1055, 1129
Alw21I GWGCWC 3 cut(s) 493, 748, 1006
Alw26I GTCTC 1 cut(s) 1158
AlwI GGATC 3 cut(s) 299, 486, 1261
AoxI GGCC 4 cut(s) 51, 331, 533, 1104
ApeKI GCWGC 2 cut(s) 661, 1199
ApoI RAATTY 2 cut(s) 180, 1241
Asp700I GAANNNNTTC 1 cut(s) 805
AspLEI GCGC 2 cut(s) 514, 736
AspS9I GGNCC 4 cut(s) 172, 331, 533, 1104
AsuHPI GGTGA 2 cut(s) 60, 206
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 3 cut(s) 493, 748, 1006
BbvI GCAGC 2 cut(s) 673, 1211
BccI CCATC 4 cut(s) 115, 196, 322, 808
BciT130I CCWGG 2 cut(s) 176, 811
BciVI GTATCC 2 cut(s) 69, 926
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 1158
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 2 cut(s) 837, 1059
BfrI CTTAAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 1159
BfuI GTATCC 2 cut(s) 69, 926
BglI GCCNNNNNGGC 1 cut(s) 658
BglII AGATCT 1 cut(s) 926
BisI GCNGC 2 cut(s) 662, 1200
BlsI GCNGC 2 cut(s) 663, 1201
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 176, 811
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 4 cut(s) 172, 331, 533, 1104
BmiI GGNNCC 1 cut(s) 1105
BmrFI CCNGG 2 cut(s) 176, 811
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 3 cut(s) 271, 561, 1012
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 732, 764
BpuEI CTTGAG 2 cut(s) 358, 414
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 1209
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 592, 719
BseBI CCWGG 2 cut(s) 176, 811
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 819
BseLI CCNNNNNNNGG 1 cut(s) 1209
BseMII CTCAG 2 cut(s) 77, 1169
BseNI ACTGG 2 cut(s) 592, 719
BseRI GAGGAG 1 cut(s) 756
BseXI GCAGC 2 cut(s) 673, 1211
BseYI CCCAGC 1 cut(s) 947
BshFI GGCC 4 cut(s) 53, 333, 535, 1106
BsiHKAI GWGCWC 3 cut(s) 493, 748, 1006
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 40, 58
BslI CCNNNNNNNGG 1 cut(s) 1209
BsmAI GTCTC 1 cut(s) 1158
BsmFI GGGAC 2 cut(s) 40, 58
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 4 cut(s) 53, 333, 535, 1106
Bsp1286I GDGCHC 3 cut(s) 493, 748, 1006
Bsp1407I TGTACA 1 cut(s) 1371
Bsp143I GATC 5 cut(s) 196, 304, 478, 926, 1266
Bsp19I CCATGG 1 cut(s) 71
BspANI GGCC 4 cut(s) 53, 333, 535, 1106
BspCNI CTCAG 2 cut(s) 76, 1168
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 1105
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 3 cut(s) 299, 486, 1261
BspTI CTTAAG 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 1371
BsrI ACTGG 2 cut(s) 592, 719
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 5 cut(s) 196, 304, 478, 926, 1266
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 176, 811
Bst4CI ACNGT 1 cut(s) 856
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 1371
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 2 cut(s) 63, 1155
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 819
BstHHI GCGC 2 cut(s) 514, 736
BstKTI GATC 5 cut(s) 199, 307, 481, 929, 1269
BstMAI GTCTC 1 cut(s) 1158
BstMBI GATC 5 cut(s) 196, 304, 478, 926, 1266
BstMWI GCNNNNNNNGC 3 cut(s) 330, 509, 658
BstNI CCWGG 2 cut(s) 176, 811
BstNSI RCATGY 4 cut(s) 159, 389, 1193, 1378
BstSCI CCNGG 2 cut(s) 174, 809
BstSFI CTRYAG 2 cut(s) 837, 1059
BstV1I GCAGC 2 cut(s) 673, 1211
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 478, 926
BstYI RGATCY 2 cut(s) 478, 926
BsuI GTATCC 2 cut(s) 69, 926
BsuRI GGCC 4 cut(s) 53, 333, 535, 1106
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 819
BtsI GCAGTG 2 cut(s) 1080, 1152
BtsIMutI CAGTG 3 cut(s) 714, 1080, 1152
BveI ACCTGC 1 cut(s) 1159
Cac8I GCNNGC 1 cut(s) 650
CciI TCATGA 1 cut(s) 408
CfoI GCGC 2 cut(s) 514, 736
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 172, 331, 533, 1104
Csp6I GTAC 6 cut(s) 136, 274, 582, 712, 952, 1372
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviQI GTAC 6 cut(s) 136, 274, 582, 712, 952, 1372
DdeI CTNAG 2 cut(s) 63, 1155
DpnI GATC 5 cut(s) 198, 306, 480, 928, 1268
DpnII GATC 5 cut(s) 196, 304, 478, 926, 1266
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 746
EcoO109I RGGNCCY 2 cut(s) 172, 1104
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 2 cut(s) 174, 809
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 71
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 2 cut(s) 40, 58
FauNDI CATATG 1 cut(s) 1272
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 2 cut(s) 606, 1036
Fnu4HI GCNGC 2 cut(s) 662, 1200
FokI GGATG 1 cut(s) 826
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 2 cut(s) 662, 1200
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 513, 735
GluI GCNGC 2 cut(s) 662, 1200
GsaI CCCAGC 1 cut(s) 951
HaeIII GGCC 4 cut(s) 53, 333, 535, 1106
HapII CCGG 1 cut(s) 536
HhaI GCGC 2 cut(s) 514, 736
Hin6I GCGC 2 cut(s) 512, 734
HinP1I GCGC 2 cut(s) 512, 734
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 5 cut(s) 28, 222, 518, 775, 1041
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 60, 206
Hpy166II GTNNAC 5 cut(s) 426, 607, 712, 1037, 1078
Hpy188I TCNGA 5 cut(s) 201, 243, 1021, 1230, 1240
Hpy188III TCNNGA 5 cut(s) 149, 337, 409, 623, 671
Hpy8I GTNNAC 5 cut(s) 426, 607, 712, 1037, 1078
HpyAV CCTTC 4 cut(s) 163, 800, 1123, 1235
HpyCH4III ACNGT 1 cut(s) 856
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 509, 658
HpyF3I CTNAG 2 cut(s) 63, 1155
HspAI GCGC 2 cut(s) 512, 734
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 196, 304, 478, 926, 1266
LmnI GCTCC 3 cut(s) 488, 743, 1009
Lsp1109I GCAGC 2 cut(s) 673, 1211
LweI GCATC 3 cut(s) 271, 561, 1012
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 5 cut(s) 66, 361, 856, 1275, 1306
MalI GATC 5 cut(s) 198, 306, 480, 928, 1268
MboI GATC 5 cut(s) 196, 304, 478, 926, 1266
MboII GAAGA 5 cut(s) 178, 394, 575, 686, 689
MflI RGATCY 2 cut(s) 478, 926
MhlI GDGCHC 3 cut(s) 493, 748, 1006
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 880
MnlI CCTC 4 cut(s) 133, 230, 344, 734
MroXI GAANNNNTTC 1 cut(s) 805
MseI TTAA 4 cut(s) 33, 230, 456, 1046
MspA1I CMGCKG 1 cut(s) 947
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 176, 811
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 2 cut(s) 176, 811
MwoI GCNNNNNNNGC 3 cut(s) 330, 509, 658
NcoI CCATGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 1272
NdeII GATC 5 cut(s) 196, 304, 478, 926, 1266
NlaIV GGNNCC 1 cut(s) 1105
NmuCI GTSAC 4 cut(s) 66, 361, 1275, 1306
NspI RCATGY 4 cut(s) 159, 389, 1193, 1378
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 53
PciI ACATGT 2 cut(s) 385, 1189
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 4 cut(s) 222, 518, 775, 1041
PflFI GACNNNGTC 1 cut(s) 1234
PfoI TCCNGGA 1 cut(s) 809
PkrI GCNGC 2 cut(s) 663, 1201
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 172
PscI ACATGT 2 cut(s) 385, 1189
PsiI TTATAA 2 cut(s) 875, 978
Psp124BI GAGCTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 174, 809
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 2 cut(s) 174, 809
PspN4I GGNNCC 1 cut(s) 1105
PspPI GGNCC 4 cut(s) 172, 331, 533, 1104
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 1 cut(s) 841
PsuI RGATCY 2 cut(s) 478, 926
PsyI GACNNNGTC 1 cut(s) 1234
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 6 cut(s) 137, 275, 583, 713, 953, 1373
RsaNI GTAC 6 cut(s) 136, 274, 582, 712, 952, 1372
SacI GAGCTC 1 cut(s) 748
SaqAI TTAA 4 cut(s) 33, 230, 456, 1046
SatI GCNGC 2 cut(s) 662, 1200
Sau3AI GATC 5 cut(s) 196, 304, 478, 926, 1266
Sau96I GGNCC 4 cut(s) 172, 331, 533, 1104
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 176, 811
SduI GDGCHC 3 cut(s) 493, 748, 1006
SfaNI GCATC 3 cut(s) 271, 561, 1012
SfcI CTRYAG 2 cut(s) 837, 1059
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 3 cut(s) 32, 337, 429
SmoI CTYRAG 3 cut(s) 32, 337, 429
SseBI AGGCCT 1 cut(s) 53
SspMI CTAG 1 cut(s) 579
SstI GAGCTC 1 cut(s) 748
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 174, 809
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 856
TatI WGTACW 3 cut(s) 581, 711, 1371
TfiI GAWTC 4 cut(s) 222, 518, 775, 1041
Tru1I TTAA 4 cut(s) 33, 230, 456, 1046
Tru9I TTAA 4 cut(s) 33, 230, 456, 1046
TscAI CASTG 3 cut(s) 714, 1080, 1152
TseFI GTSAC 4 cut(s) 66, 361, 1275, 1306
TseI GCWGC 2 cut(s) 661, 1199
Tsp45I GTSAC 4 cut(s) 66, 361, 1275, 1306
TspDTI ATGAA 7 cut(s) 177, 425, 513, 1097, 1165, 1296, 1352
TspGWI ACGGA 2 cut(s) 432, 989
TspRI CASTG 3 cut(s) 714, 1080, 1152
Tth111I GACNNNGTC 1 cut(s) 1234
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 2 cut(s) 180, 1241
XceI RCATGY 4 cut(s) 159, 389, 1193, 1378
XmiI GTMKAC 2 cut(s) 606, 1036
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.