Rw5G023570

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
33254054 .. 33266516
12463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023570.1

Sequence Viewer

Length: 4161 bp
ATGCACCTACTCTCACAGCACTCATCCTTCATGTCTCCAGGTACCGATTTCCTTCTTAAACCCCTTTTCATTCGTGGGTTTTCTGGATCACTACATCTCCTTTTGTTATTTGTGTTGCTTATCTCTTGGTTGTGGAAGAAATTCAAGGTGGGTGATGGGGGAGGGGCCCCAAAAGAGGAGTCTAGGAATAGGACAACTCTGTACTACTGGCACACTCTAATATGTTGTCTTGCTGTTTCTGCTGTTAGTGTTGGCTTTTGTTTATTCAACTACTTTTCCTGGTATAAACATGTCTGGTCTGAAGAAAAGCTAGTGACCGTTTTTGATTTAGCAATTAGAACACTTAGTTGGGGTGTAGTTTTTGTTTACTTGCACATCCACTTCTCTAGTTGTGATGAACCAAAGTTTCCATTCTTACTCAGAGTTTGGTGGGGTTTCTACTTTTCTTTATCTTGCTATTGCCTTGTCATAGACATTGTTCTTTACCAAAAACACGTTGCCATACCCGTTCAATCTCTAGTTTCTGATGCTGCCTTCCTTGTCTCTTCTTTGTTCTTTATATATGTGGTGTTTATTGGGATGAAAGAGGGTAGAGATACCCTTCTTGAGGAACCCCTTTTGAATGGTAGTAGAAATTCTAGTATAGGTGACACTGCAAAATCAAATAAGTCCAAAGGGGATGCAATTGTGAAAACCCCTTATTCAAATGCTGGGATTTTCAGCATCCTCACATTTTCTTGGATGAGTCCTTTAATCGCGGTGGGTAATAAGAAAACATTAAACCTTGAAGATGTTCCTGAACTAGACAAGGGTGATAGTGTAGTTGGGTCCTTTCCAGTTTTTAGAAATAGGCTCGAGTCGGAGTGTGGTACTCTTAGCAGATTGACCACACTTCATTTGGTGAAGGCGTTAATCTTCTCAGCCTGGAGAGAGATTCTTTGGATAGCTTTCTTTGTGCTTCTTTACACAATGGCTTCTTATGTTGGCCCATATCTAATCGACACATTGGTGCAATACCTTTATGGGCGACGTGAGTTTGAATATGAGGGCTATGCTTTAGTTTCTGCCTTTTTGTTGGCGAAGCTCGTGGAGTGCCTCTCTCAGAGGCACTGGTTCTTTAGGGCGCAGCAGATAGGAGTAAGAATAAGGGCTGTACTAGTTACCATGATCTATAATAAGGGGTTGACCCTGTCTTGCCAGTCGAAGCAGTGCCACACTAGTGGTGAGATTATCAATTTTATGACTGTTGATGCTGAGAGGGTTGGTGACTTCGCTTGGTACATGCATGGGCCATGGATGGTCGTTCTACAAGTTGCTTTAGCCCTCTTATTTTATGAGACAGGATGGTTACGAAAGTTTGTTTATACTGCAGCCATGAACAAATTTGTCTTCTGGGTTGCCCCCACATTTGTGTCTGTGGTCACTTTTCTTGCTTGCATGCTTTTGGGGATCCCACTGGAATCAGGGAAGATCTTATCTGCACTTGCAACGTTCAGAATTCTTCAACAGCCCATCTTCAATCTTCCAGACTCAATTTCAATGATAGCACAGACAAAGGTATCCCTTGATAGAATTGCATCCTTCCTTTCTCTTGATGAGTTGAAGCCTGATGTTATAGAGAACCTTCCTAGAGGTAGTTCTGATACTGCAATTGAAATATTGAATGCAAATTTCTCTTGGGAATTATCTTCGCCTAACCCTACATTGAGGGATATAAATATGAAAGTTAGCCATGGTATGAAGGTTGCTGTTTGTGGTACTGTTGGCTCAGGCAAATCAAGCTTACTTTCTTGTATTCTGGGAGAAGTTCCCAAGATATCTGGGACTCTTAAGTTGTGTGGGACAAAAGCCTATGTTTCTCAGTCACCATGGATACAGAGTGGTAAAATAGAACAAAACATATTGTTTGGTAAAGAGATGGACAGAGAAAGGTACGAGGTGGTTCTTGAAGCATGTTCGTTGAAGAAGGACCTCGAAATTCTATCATTTGGTGACCAGACGGTTATAGGGGAAAGGGGAATCAATTTAAGTGGAGGTCAGAAGCAAAGAATACAAATTGCACGAGCTTTGTACCAAGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCTCACATTTTCAAGGAATGCTTGATGGACCTCTTGTGTTCCAAAACAGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATCGTCTTGGTCATGAAAGATGGAAAGATCACTCAAGTTGGAAAGTTCAATGACATTCTTAATTCAGGAACTGATTTTATGGATCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTTTGTTGGGGTAGGGCCAGTTGAAAAAACAAGCATCAGCAAAGAAGATAACAATTCGGCAAGTACTACTGGGGCTATCCAAAAAGTAGACAACAGAGATGTTCAAGGTAGTAAAATAGATGATTTAGGAGAGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAAAGAAAGGTAAGGTTGGGTTTTCAGTGTACTGGAAATACATTACCGCAACGTATGGAGGAGCTCTTGTGCCTTTTATATTACTTGCACAGATTCTCTTTCAACTCCTTCAAATTGGAAGCAATTACTGGATGGCTTGGGCAACTCCTGTGTCAGCAGACGTGAAATCAACTGTTTCAAGCTCTACGCTTATAATTGTCTATGTGGCCTTGGCTGTTGGAAGTTCTTTTTGTATCCTTTTAAGATCTCTGCTTCTTGTAACAGCTGGGTACAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATATTCCGTGCTCCCATGTCATTCTTCGATGCCACTCCAAGTGGACGAATCTTAAACAGAGCTTCTACAGACCAAAATGCAATGGACATGAACATTTCAAATCAAATTGGGGCCTTTGCCAACTCAATGATACAGCTTTTAGGAATTATTGCAGTGATGTCTCAGGTGTCATGGCAGGTTTTCATCATATTTATACCTGTGATTACAGCCTGTATTTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTAGCAAGATTGGTTGGAGTATGCAAAGCTCCTGTGATACAACATTTTGCCGAAACAATTTCAGGGTCAACTACTATTAGGAGCTTCGATCAAGAATCTAGATTCCGAGATACCAACTTGAAACTGATGGATGGATATGGTCGGCCAAAGTTCTACACAGCTGGTGCAATGGAGTGGCTATGCTTTCGCTTGGATGTGTTGTCATTCACTACTTTTGCATTCTGTTTAATTTTCTTGATCTCTGTTCCTGAAGGAGTGATAGATCCAGGCATTGCGGGCTTAGCCGTCACATATGGACTTAACCTAAACATGTTACAAGCTTGGGTTATATGGCATCTTTGCAATATGGAAAACAAGATAATATCTGTGCGGTATGCTCCACACATGCCACTTGTGTTGCGGGGTCTTACATGTTCCTTCCCTGGAGGAATGAAAACTGGGATTGTGGGGAGAACTGGCAGTGGAAAGTCAACTCTCATTCAAACTCTTTTCCGAATCGTTGATCCTGCTGCTGGCCGGATTTTGATAGATGGCATCGATATCACTTCTATTGGATTGCATGATCTGCGGTCTAAGCTAAGCATTATCCCTCAGGACCCAACCATGTTTGAAGGAACTGTAAGAAGCAATCTGGACCCACTTGAAGAGTATACAGATGAACAAATTTGGGAGGCCCTGGATAAATGCCAACTTGGAGATGAAGTTAGGAAACAACAAGGGAAGCTTGATTCTACAGTTAGTGAAAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTGGTTTGCCTGGGCCGTGTGCTCCTCAAGAAAAGTAAAGTCCTGGTGCTTGATGAAGCTACTGCATCTGTTGATACTGCTACAGATAATTTGATTCAGCAGACCCTTCGGCATCACTTTTCAGACTGTACGGTCATTACTATTGCGCATCGAATAACTTCTGTTCTTGACAGTGACATGGTTCTACTTTTAAGTCATGGGCTTATTGAGGAATGTGATTCTCCTGCAAGATTGCTAGAAAACAAGTTATCATCTTTTGCCCAACTTGTAGCAGAGTATACAATGAGATCGAATTCCACTTTTGAGTAG

Protein Analysis

1386

Amino Acids

154.59

Weight (kDa)

6.54

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 569 - 703 3.5e-20 ABC transporter
ABC_membrane PF00664 863 - 1105 1.1e-31 ABC transporter transmembrane region
ABC_tran PF00005 1158 - 1306 7.1e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2705
AasI GACNNNNNNGTC 1 cut(s) 3983
Acc16I TGCGCA 1 cut(s) 3999
Acc36I ACCTGC 2 cut(s) 2224, 2989
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 3 cut(s) 2436, 3725, 4130
AccII CGCG 1 cut(s) 758
AciI CCGC 6 cut(s) 758, 2559, 3350, 3445, 3475, 3643
AclI AACGTT 1 cut(s) 1490
AclWI GGATC 8 cut(s) 94, 1444, 1457, 2096, 2140, 2316, 3332, 3572
AcoI YGGCCR 2 cut(s) 3218, 3589
AcsI RAATTY 8 cut(s) 140, 634, 1382, 1497, 1669, 1977, 3738, 4144
AcuI CTGAAG 3 cut(s) 321, 3048, 3345
AfiI CCNNNNNNNGG 4 cut(s) 175, 607, 3039, 3587
AflII CTTAAG 1 cut(s) 1829
AflIII ACRYGT 4 cut(s) 289, 493, 3384, 3485
AhlI ACTAGT 2 cut(s) 1156, 1217
AjiI CACGTC 2 cut(s) 1031, 2674
AjnI CCWGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AleI CACNNNNGTG 3 cut(s) 1007, 1218, 1409
Alw21I GWGCWC 4 cut(s) 2323, 2578, 2836, 3876
Alw26I GTCTC 4 cut(s) 39, 547, 1331, 2988
AlwI GGATC 8 cut(s) 94, 1444, 1457, 2096, 2140, 2316, 3332, 3572
AlwNI CAGNNNCTG 1 cut(s) 2297
Ama87I CYCGRG 1 cut(s) 854
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 7 cut(s) 530, 1126, 1370, 2219, 2491, 3584, 3850
ApoI RAATTY 8 cut(s) 140, 634, 1382, 1497, 1669, 1977, 3738, 4144
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 3 cut(s) 140, 792, 4009
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 3 cut(s) 1126, 2344, 4000
AsuHPI GGTGA 8 cut(s) 164, 659, 824, 913, 1235, 1277, 1857, 2003
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 5 cut(s) 828, 1969, 2161, 3670, 3709
AxyI CCTNAGG 1 cut(s) 3666
BaeGI GKGCMC 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 1542, 1575
BamHI GGATCC 1 cut(s) 1449
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 169, 2578
BauI CACGAG 3 cut(s) 1085, 2061, 3069
BbsI GAAGAC 1 cut(s) 1381
Bbv12I GWGCWC 4 cut(s) 2323, 2578, 2836, 3876
BbvI GCAGC 7 cut(s) 517, 1138, 1382, 2206, 2503, 3571, 3862
BceAI ACGGC 2 cut(s) 3344, 3852
BcgI CGANNNNNNTGC 2 cut(s) 3941, 3975
BciT130I CCWGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
BciVI GTATCC 3 cut(s) 1570, 1866, 2756
BcoDI GTCTC 4 cut(s) 39, 547, 1331, 2988
BcuI ACTAGT 2 cut(s) 1156, 1217
BfmI CTRYAG 4 cut(s) 1368, 2889, 3807, 3933
BfrI CTTAAG 1 cut(s) 1829
BfuAI ACCTGC 2 cut(s) 2224, 2989
BfuI GTATCC 3 cut(s) 1570, 1866, 2756
BglI GCCNNNNNGGC 1 cut(s) 2488
BglII AGATCT 2 cut(s) 1470, 2756
BisI GCNGC 7 cut(s) 531, 1127, 1371, 2220, 2492, 3585, 3851
BlpI GCTNAGC 2 cut(s) 3355, 3653
BlsI GCNGC 7 cut(s) 532, 1128, 1372, 2221, 2493, 3586, 3852
BmcAI AGTACT 1 cut(s) 2413
Bme1390I CCNGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
Bme18I GGWCC 5 cut(s) 828, 1969, 2161, 3670, 3709
BmeT110I CYCGRG 1 cut(s) 854
BmgBI CACGTC 2 cut(s) 1031, 2674
BmrFI CCNGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
BmrI ACTGGG 2 cut(s) 2427, 3522
BmuI ACTGGG 2 cut(s) 2427, 3522
BpiI GAAGAC 1 cut(s) 1381
BplI GAGNNNNNCTC 2 cut(s) 1082, 1114
BpmI CTGGAG 4 cut(s) 21, 946, 3519, 3853
Bpu10I CCTNAGC 1 cut(s) 1768
Bpu1102I GCTNAGC 2 cut(s) 3355, 3653
BpuEI CTTGAG 3 cut(s) 626, 2244, 3863
Bsa29I ATCGAT 1 cut(s) 3612
BsaBI GATNNNNATC 1 cut(s) 2088
BsaJI CCNNGG 7 cut(s) 1292, 1732, 1868, 2721, 3496, 3750, 3862
BsaXI ACNNNNNCTCC 8 cut(s) 81, 111, 2565, 2595, 3762, 3792, 3826, 3856
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 607, 3039, 3587
Bse21I CCTNAGG 1 cut(s) 3666
Bse3DI GCAATG 3 cut(s) 2910, 3249, 3345
Bse8I GATNNNNATC 1 cut(s) 2088
BseBI CCWGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
BseCI ATCGAT 1 cut(s) 3612
BseDI CCNNGG 7 cut(s) 1292, 1732, 1868, 2721, 3496, 3750, 3862
BseJI GATNNNNATC 1 cut(s) 2088
BseLI CCNNNNNNNGG 4 cut(s) 175, 607, 3039, 3587
BseMI GCAATG 3 cut(s) 2910, 3249, 3345
BseMII CTCAG 8 cut(s) 433, 933, 1115, 1245, 1782, 1874, 2999, 3680
BseRI GAGGAG 3 cut(s) 191, 2586, 3866
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 7 cut(s) 517, 1138, 1382, 2206, 2503, 3571, 3862
BseYI CCCAGC 2 cut(s) 710, 2777
BsgI GTGCAG 1 cut(s) 1464
Bsh1236I CGCG 1 cut(s) 758
BshNI GGYRCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 3612
BsiHKAI GWGCWC 4 cut(s) 2323, 2578, 2836, 3876
BsiHKCI CYCGRG 1 cut(s) 854
BsiSI CCGG 1 cut(s) 3592
BslFI GGGAC 2 cut(s) 1837, 1855
BslI CCNNNNNNNGG 4 cut(s) 175, 607, 3039, 3587
BsmAI GTCTC 4 cut(s) 39, 547, 1331, 2988
BsmFI GGGAC 2 cut(s) 1837, 1855
BsmI GAATGC 3 cut(s) 1669, 2156, 3293
BsoBI CYCGRG 1 cut(s) 854
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 5 cut(s) 169, 2323, 2578, 2836, 3876
Bsp1720I GCTNAGC 2 cut(s) 3355, 3653
Bsp19I CCATGG 3 cut(s) 1292, 1732, 1868
BspACI CCGC 6 cut(s) 758, 2559, 3350, 3445, 3475, 3643
BspCNI CTCAG 8 cut(s) 432, 932, 1114, 1246, 1781, 1873, 2998, 3679
BspDI ATCGAT 1 cut(s) 3612
BspFNI CGCG 1 cut(s) 758
BspHI TCATGA 1 cut(s) 2238
BspMAI CTGCAG 1 cut(s) 1372
BspMI ACCTGC 2 cut(s) 2224, 2989
BspPI GGATC 8 cut(s) 94, 1444, 1457, 2096, 2140, 2316, 3332, 3572
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 1829
BsrDI GCAATG 3 cut(s) 2910, 3249, 3345
BssECI CCNNGG 7 cut(s) 1292, 1732, 1868, 2721, 3496, 3750, 3862
BssNAI GTATAC 2 cut(s) 3726, 4131
BssSI CACGAG 3 cut(s) 1085, 2061, 3069
BssT1I CCWWGG 4 cut(s) 1292, 1732, 1868, 2721
Bst1107I GTATAC 2 cut(s) 3726, 4131
Bst2BI CACGAG 3 cut(s) 1085, 2061, 3069
Bst2UI CCWGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
Bst6I CTCTTC 4 cut(s) 550, 2502, 2807, 3714
BstAFI CTTAAG 1 cut(s) 1829
BstAPI GCANNNNNTGC 1 cut(s) 3640
BstC8I GCNNGC 4 cut(s) 1435, 1439, 3352, 3589
BstDSI CCRYGG 3 cut(s) 1292, 1732, 1868
BstEII GGTNACC 1 cut(s) 1991
BstENI CCTNNNNNAGG 1 cut(s) 605
BstFNI CGCG 1 cut(s) 758
BstHHI GCGC 3 cut(s) 1126, 2344, 4000
BstMAI GTCTC 4 cut(s) 39, 547, 1331, 2988
BstMWI GCNNNNNNNGC 9 cut(s) 239, 1779, 2120, 2339, 2488, 3351, 3356, 3640, 3649
BstNI CCWGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
BstNSI RCATGY 7 cut(s) 293, 1285, 1441, 1956, 3388, 3463, 3489
BstPI GGTNACC 1 cut(s) 1991
BstSCI CCNGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
BstSFI CTRYAG 4 cut(s) 1368, 2889, 3807, 3933
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 7 cut(s) 517, 1138, 1382, 2206, 2503, 3571, 3862
BstV2I GAAGAC 1 cut(s) 1381
BstX2I RGATCY 6 cut(s) 1449, 1470, 2132, 2308, 2756, 3337
BstXI CCANNNNNNTGG 1 cut(s) 1220
BstYI RGATCY 6 cut(s) 1449, 1470, 2132, 2308, 2756, 3337
BstZ17I GTATAC 2 cut(s) 3726, 4131
Bsu15I ATCGAT 1 cut(s) 3612
Bsu36I CCTNAGG 1 cut(s) 3666
BsuI GTATCC 3 cut(s) 1570, 1866, 2756
BsuTUI ATCGAT 1 cut(s) 3612
BtgI CCRYGG 3 cut(s) 1292, 1732, 1868
BtrI CACGTC 2 cut(s) 1031, 2674
BtsI GCAGTG 4 cut(s) 651, 1214, 2982, 3541
BtsIMutI CAGTG 8 cut(s) 651, 1108, 1214, 1454, 2544, 2982, 3541, 4030
BveI ACCTGC 2 cut(s) 2224, 2989
Cac8I GCNNGC 4 cut(s) 1435, 1439, 3352, 3589
CaiI CAGNNNCTG 1 cut(s) 2297
CciI TCATGA 1 cut(s) 2238
CfoI GCGC 3 cut(s) 1126, 2344, 4000
ClaI ATCGAT 1 cut(s) 3612
CspCI CAANNNNNGTGG 4 cut(s) 2011, 2046, 3453, 3488
DrdI GACNNNNNNGTC 1 cut(s) 3983
DseDI GACNNNNNNGTC 1 cut(s) 3983
EaeI YGGCCR 2 cut(s) 3218, 3589
Eam1104I CTCTTC 4 cut(s) 550, 2502, 2807, 3714
EarI CTCTTC 4 cut(s) 550, 2502, 2807, 3714
Ecl136II GAGCTC 1 cut(s) 2576
Eco130I CCWWGG 4 cut(s) 1292, 1732, 1868, 2721
Eco24I GRGCYC 2 cut(s) 169, 2578
Eco32I GATATC 4 cut(s) 1818, 2086, 2227, 3616
Eco47I GGWCC 5 cut(s) 828, 1969, 2161, 3670, 3709
Eco53kI GAGCTC 1 cut(s) 2576
Eco57I CTGAAG 3 cut(s) 321, 3048, 3345
Eco81I CCTNAGG 1 cut(s) 3666
Eco88I CYCGRG 1 cut(s) 854
Eco91I GGTNACC 1 cut(s) 1991
EcoICRI GAGCTC 1 cut(s) 2576
EcoNI CCTNNNNNAGG 1 cut(s) 605
EcoO109I RGGNCCY 7 cut(s) 165, 166, 828, 1969, 2934, 3670, 3748
EcoO65I GGTNACC 1 cut(s) 1991
EcoRI GAATTC 2 cut(s) 1497, 4144
EcoRII CCWGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
EcoRV GATATC 4 cut(s) 1818, 2086, 2227, 3616
EcoT14I CCWWGG 4 cut(s) 1292, 1732, 1868, 2721
EcoT22I ATGCAT 1 cut(s) 1287
EcoT38I GRGCYC 2 cut(s) 169, 2578
ErhI CCWWGG 4 cut(s) 1292, 1732, 1868, 2721
FalI AAGNNNNNCTT 6 cut(s) 2138, 2170, 2478, 2510, 3783, 3815
FaqI GGGAC 2 cut(s) 1837, 1855
FauI CCCGC 2 cut(s) 3343, 3468
FauNDI CATATG 1 cut(s) 3367
FblI GTMKAC 3 cut(s) 2436, 3725, 4130
Fnu4HI GCNGC 7 cut(s) 531, 1127, 1371, 2220, 2492, 3585, 3851
FriOI GRGCYC 2 cut(s) 169, 2578
Fsp4HI GCNGC 7 cut(s) 531, 1127, 1371, 2220, 2492, 3585, 3851
FspI TGCGCA 1 cut(s) 3999
GlaI GCGC 3 cut(s) 1125, 2343, 3999
GluI GCNGC 7 cut(s) 531, 1127, 1371, 2220, 2492, 3585, 3851
GsaI CCCAGC 2 cut(s) 714, 2781
GsuI CTGGAG 4 cut(s) 21, 946, 3519, 3853
HapII CCGG 1 cut(s) 3592
HhaI GCGC 3 cut(s) 1126, 2344, 4000
Hin6I GCGC 3 cut(s) 1124, 2342, 3998
HinP1I GCGC 3 cut(s) 1124, 2342, 3998
HincII GTYRAC 3 cut(s) 1185, 3144, 3546
HindII GTYRAC 3 cut(s) 1185, 3144, 3546
HindIII AAGCTT 4 cut(s) 1780, 2331, 3393, 3797
HpaII CCGG 1 cut(s) 3592
HphI GGTGA 8 cut(s) 164, 659, 824, 913, 1235, 1277, 1857, 2003
Hpy166II GTNNAC 9 cut(s) 367, 1185, 2437, 2542, 2867, 3144, 3546, 3726, 4131
Hpy8I GTNNAC 9 cut(s) 367, 1185, 2437, 2542, 2867, 3144, 3546, 3726, 4131
Hpy99I CGWCG 1 cut(s) 1032
HpyCH4IV ACGT 5 cut(s) 495, 1030, 1490, 2564, 2673
HpyF10VI GCNNNNNNNGC 9 cut(s) 239, 1779, 2120, 2339, 2488, 3351, 3356, 3640, 3649
HpySE526I ACGT 5 cut(s) 495, 1030, 1490, 2564, 2673
HspAI GCGC 3 cut(s) 1124, 2342, 3998
KpnI GGTACC 1 cut(s) 45
LmnI GCTCC 7 cut(s) 2318, 2573, 2839, 3109, 3156, 3457, 3879
Lsp1109I GCAGC 7 cut(s) 517, 1138, 1382, 2206, 2503, 3571, 3862
MaeII ACGT 5 cut(s) 495, 1030, 1490, 2564, 2673
MfeI CAATTG 2 cut(s) 684, 1650
MflI RGATCY 6 cut(s) 1449, 1470, 2132, 2308, 2756, 3337
MhlI GDGCHC 5 cut(s) 169, 2323, 2578, 2836, 3876
MlyI GAGTC 5 cut(s) 188, 754, 866, 1523, 1819
MmeI TCCRAC 4 cut(s) 840, 2245, 2710, 3070
Mph1103I ATGCAT 1 cut(s) 1287
MroXI GAANNNNTTC 3 cut(s) 140, 792, 4009
MslI CAYNNNNRTG 3 cut(s) 1007, 1218, 1409
MspA1I CMGCKG 3 cut(s) 2777, 3236, 3853
MspCI CTTAAG 1 cut(s) 1829
MspI CCGG 1 cut(s) 3592
MspR9I CCNGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
MunI CAATTG 2 cut(s) 684, 1650
Mva1269I GAATGC 3 cut(s) 1669, 2156, 3293
MvaI CCWGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 9 cut(s) 239, 1779, 2120, 2339, 2488, 3351, 3356, 3640, 3649
NcoI CCATGG 3 cut(s) 1292, 1732, 1868
NdeI CATATG 1 cut(s) 3367
NmuCI GTSAC 9 cut(s) 313, 647, 1265, 1420, 1863, 1991, 2191, 3361, 4025
NsbI TGCGCA 1 cut(s) 3999
NsiI ATGCAT 1 cut(s) 1287
NspI RCATGY 7 cut(s) 293, 1285, 1441, 1956, 3388, 3463, 3489
OliI CACNNNNGTG 3 cut(s) 1007, 1218, 1409
PaeI GCATGC 1 cut(s) 1441
PaeR7I CTCGAG 1 cut(s) 854
PagI TCATGA 1 cut(s) 2238
PciI ACATGT 3 cut(s) 289, 3384, 3485
PctI GAATGC 3 cut(s) 1669, 2156, 3293
PdmI GAANNNNTTC 3 cut(s) 140, 792, 4009
PflFI GACNNNGTC 1 cut(s) 1189
PkrI GCNGC 7 cut(s) 532, 1128, 1372, 2221, 2493, 3586, 3852
PleI GAGTC 5 cut(s) 187, 753, 865, 1523, 1819
PpsI GAGTC 5 cut(s) 187, 753, 865, 1523, 1819
PpuMI RGGWCCY 3 cut(s) 828, 1969, 3670
PscI ACATGT 3 cut(s) 289, 3384, 3485
PsiI TTATAA 1 cut(s) 2705
Psp124BI GAGCTC 1 cut(s) 2578
Psp1406I AACGTT 1 cut(s) 1490
Psp5II RGGWCCY 3 cut(s) 828, 1969, 3670
Psp6I CCWGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
PspEI GGTNACC 1 cut(s) 1991
PspFI CCCAGC 2 cut(s) 710, 2777
PspGI CCWGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
PspOMI GGGCCC 1 cut(s) 165
PspPPI RGGWCCY 3 cut(s) 828, 1969, 3670
PspXI VCTCGAGB 1 cut(s) 854
PstI CTGCAG 1 cut(s) 1372
PstNI CAGNNNCTG 1 cut(s) 2297
PsuI RGATCY 6 cut(s) 1449, 1470, 2132, 2308, 2756, 3337
PsyI GACNNNGTC 1 cut(s) 1189
PvuII CAGCTG 3 cut(s) 2777, 3236, 3853
RseI CAYNNNNRTG 3 cut(s) 1007, 1218, 1409
SacI GAGCTC 1 cut(s) 2578
SatI GCNGC 7 cut(s) 531, 1127, 1371, 2220, 2492, 3585, 3851
ScaI AGTACT 1 cut(s) 2413
SchI GAGTC 5 cut(s) 188, 754, 866, 1523, 1819
ScrFI CCNGG 8 cut(s) 39, 280, 925, 3342, 3498, 3752, 3863, 3896
SduI GDGCHC 5 cut(s) 169, 2323, 2578, 2836, 3876
SfcI CTRYAG 4 cut(s) 1368, 2889, 3807, 3933
Sfr274I CTCGAG 1 cut(s) 854
SinI GGWCC 5 cut(s) 828, 1969, 2161, 3670, 3709
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 3 cut(s) 1007, 1218, 1409
SmlI CTYRAG 5 cut(s) 605, 854, 1829, 2259, 3878
SmoI CTYRAG 5 cut(s) 605, 854, 1829, 2259, 3878
SpeI ACTAGT 2 cut(s) 1156, 1217
SphI GCATGC 1 cut(s) 1441
SsiI CCGC 6 cut(s) 758, 2559, 3350, 3445, 3475, 3643
SspI AATATT 2 cut(s) 1659, 3053
SstI GAGCTC 1 cut(s) 2578
StyD4I CCNGG 8 cut(s) 37, 278, 923, 3340, 3496, 3750, 3861, 3894
StyI CCWWGG 4 cut(s) 1292, 1732, 1868, 2721
TaiI ACGT 5 cut(s) 498, 1033, 1493, 2567, 2676
TaqI TCGA 9 cut(s) 855, 999, 1202, 1974, 2850, 3162, 3612, 4003, 4142
TatI WGTACW 4 cut(s) 201, 1153, 2411, 2541
TscAI CASTG 8 cut(s) 658, 1115, 1214, 1461, 2544, 2982, 3541, 4030
TseFI GTSAC 9 cut(s) 313, 647, 1265, 1420, 1863, 1991, 2191, 3361, 4025
TseI GCWGC 7 cut(s) 530, 1126, 1370, 2219, 2491, 3584, 3850
Tsp45I GTSAC 9 cut(s) 313, 647, 1265, 1420, 1863, 1991, 2191, 3361, 4025
TspGWI ACGGA 1 cut(s) 2819
TspRI CASTG 8 cut(s) 658, 1115, 1214, 1461, 2544, 2982, 3541, 4030
Tth111I GACNNNGTC 1 cut(s) 1189
Vha464I CTTAAG 1 cut(s) 1829
VpaK11BI GGWCC 5 cut(s) 828, 1969, 2161, 3670, 3709
XagI CCTNNNNNAGG 1 cut(s) 605
XapI RAATTY 8 cut(s) 140, 634, 1382, 1497, 1669, 1977, 3738, 4144
XbaI TCTAGA 1 cut(s) 3173
XceI RCATGY 7 cut(s) 293, 1285, 1441, 1956, 3388, 3463, 3489
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 854
XmiI GTMKAC 3 cut(s) 2436, 3725, 4130
XmnI GAANNNNTTC 3 cut(s) 140, 792, 4009
ZrmI AGTACT 1 cut(s) 2413
Zsp2I ATGCAT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.