Rw0G000830

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00024
OG0000680
Physical Location & Seq
Forward (+)
24042 .. 25288
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000830.1

Sequence Viewer

Length: 345 bp
ATGCAGGAATGTTTGGTGGCCCTCTTGAGTTCCAAAACTGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTATCTTGGTCATGAAAGATGGAAGGATCACTCAAGCTGGAAAGTTCAATGACATTATTAATTCAGGAACTGATTTTAAAGATCTCGTGGGAGCACACAATGAAGCTTTGTCTGCACTTGATTCTGTTGGGGTAGGGCCAGGTGAAAAAACAAGTATCCGCAAGGAAGATAACAATTCGACTAGTACTAATGGGGCTGTCAAAGAAGTAGACAACAACGATGTTGAGGCAGTGTGTTCTGCTGATCCATATGTCACATGA

Protein Analysis

114

Amino Acids

12.13

Weight (kDa)

4.49

Isoelectric Point (pI)

11.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 244
AclWI GGATC 2 cut(s) 119, 323
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 122, 191
AluI AGCT 2 cut(s) 122, 191
Alw21I GWGCWC 1 cut(s) 181
AlwI GGATC 2 cut(s) 119, 323
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 2 cut(s) 18, 221
ApeKI GCWGC 1 cut(s) 77
AseI ATTAAT 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 19, 221
AsuHPI GGTGA 1 cut(s) 239
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 251
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 19, 221
BmrFI CCNGG 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 46, 102
BseBI CCWGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 20, 223
BsiHKAI GWGCWC 1 cut(s) 181
BsnI GGCC 2 cut(s) 20, 223
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 111, 166, 328
BspACI CCGC 1 cut(s) 244
BspANI GGCC 2 cut(s) 20, 223
BspHI TCATGA 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 2 cut(s) 119, 323
BssMI GATC 3 cut(s) 111, 166, 328
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 40
BstKTI GATC 3 cut(s) 114, 169, 331
BstMBI GATC 3 cut(s) 111, 166, 328
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 20, 223
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 19, 221
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 97, 342
CviJI RGCY 5 cut(s) 20, 122, 191, 223, 281
CviKI_1 RGCY 5 cut(s) 20, 122, 191, 223, 281
CviQI GTAC 1 cut(s) 270
DpnI GATC 3 cut(s) 113, 168, 330
DpnII GATC 3 cut(s) 111, 166, 328
DraI TTTAAA 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 100, 345
FaiI YATR 5 cut(s) 48, 98, 334, 336, 343
FatI CATG 2 cut(s) 96, 341
FauNDI CATATG 1 cut(s) 334
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 20, 223
Hin1II CATG 2 cut(s) 100, 345
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 25, 97, 150
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 4, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 100, 345
Kzo9I GATC 3 cut(s) 111, 166, 328
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 87, 108, 135, 210, 237
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 49, 337
MalI GATC 3 cut(s) 113, 168, 330
MboI GATC 3 cut(s) 111, 166, 328
MboII GAAGA 1 cut(s) 263
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 145, 259
MnlI CCTC 2 cut(s) 32, 304
MseI TTAA 2 cut(s) 144, 162
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 334
NdeII GATC 3 cut(s) 111, 166, 328
NlaIII CATG 2 cut(s) 100, 345
NmuCI GTSAC 2 cut(s) 49, 337
PagI TCATGA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 2 cut(s) 19, 221
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 144, 162
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 111, 166, 328
Sau96I GGNCC 2 cut(s) 19, 221
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 76, 124, 193, 229
SmlI CTYRAG 2 cut(s) 25, 117
SmoI CTYRAG 2 cut(s) 25, 117
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 2 cut(s) 145, 259
SsiI CCGC 1 cut(s) 244
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 263
TasI AATT 2 cut(s) 145, 259
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 144, 162
Tru9I TTAA 2 cut(s) 144, 162
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 2 cut(s) 49, 337
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 2 cut(s) 49, 337
TspDTI ATGAA 2 cut(s) 113, 201
TspRI CASTG 1 cut(s) 321
VspI ATTAAT 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.