Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

29174520 .. 29175759

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATGGCGCCACGAAAAACCCACCTCTTAATTCTCCGACTTGGCGTATTGGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCCGAGGAATGTTTGGTGGCCTTCTTGAGTTCCAAAACTGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTATCTTGGTCATGAAAGATGGAAGGATCACTCAAGCTGGAAAGTTCAATGACATTATTAATTCAGAACTGATTTTAAAGATCTCGTGGGAGCACACAATGAAGCTTTGTCCGCACTTATTTCGTTGGGGTAGGGCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

7.85

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	100, 241
AluBI	AGCT	2 cut(s)	230, 298
AluI	AGCT	2 cut(s)	230, 298
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	126, 327
ApeKI	GCWGC	1 cut(s)	185
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcnI	CCSGG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	190
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	154, 210
BpuMI	CCSGG	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	128, 329
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	330
BsnI	GGCC	2 cut(s)	128, 329
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	219, 273
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	128, 329
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	219, 273
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	222, 276
BstMBI	GATC	2 cut(s)	219, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	128, 329
BtsCI	GGATG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	190
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	327
CviAII	CATG	2 cut(s)	92, 205
CviJI	RGCY	4 cut(s)	128, 230, 298, 329
CviKI_1	RGCY	4 cut(s)	128, 230, 298, 329
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	221, 275
DpnII	GATC	2 cut(s)	219, 273
DraI	TTTAAA	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	2 cut(s)	95, 208
FaiI	YATR	3 cut(s)	93, 156, 206
FatI	CATG	2 cut(s)	91, 204
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	128, 329
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	95, 208
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	38, 112, 259
Hpy188III	TCNNGA	2 cut(s)	133, 205
HpyAV	CCTTC	2 cut(s)	139, 210
HpyCH4III	ACNGT	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	95, 208
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	219, 273
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	2 cut(s)	195, 216
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	221, 275
MboI	GATC	2 cut(s)	219, 273
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	30, 253
Mly113I	GGCGCC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	46, 61
MnlI	CCTC	4 cut(s)	35, 55, 70, 106
MseI	TTAA	4 cut(s)	29, 84, 252, 269
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	2 cut(s)	219, 273
NlaIII	CATG	2 cut(s)	95, 208
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	273
SaqAI	TTAA	4 cut(s)	29, 84, 252, 269
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	219, 273
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	27, 66, 90, 184, 232, 300
SfoI	GGCGCC	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	133, 225
SmoI	CTYRAG	2 cut(s)	133, 225
Sse9I	AATT	2 cut(s)	30, 253
SsiI	CCGC	1 cut(s)	305
SspDI	GGCGCC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	30, 253
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	4 cut(s)	29, 84, 252, 269
Tru9I	TTAA	4 cut(s)	29, 84, 252, 269
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	45, 80, 221, 308
VspI	ATTAAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.