Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

39765011 .. 39770380

Gene Structure 5370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG345000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3285 bp

ATGAGTCCTTTAATCGCTGTTGGCAATAAGAAAACATTAAACCTTGAAGATGTTCCTGGACTAGACAAGGGTGATAGTGTAGTTGGGTCCCTTCCAATTTTTAGAAATCAGCTGGAGTCAGAGTCTGGTACTCTTAGCAGAGTTACCACACTTCATCTGGTAAAGGCATTAATCTTCTCGGCCTGGAGAGAGATTCTTTGGACAGCTTTATTTGCACTGCTGTCCACAGTGGCTTCTTATGTCGGCCCATATCTAATCGACACCTTTGTGCAATACCTCTATGGGCGACGTGAGTTCAGAAATGAGGGCTATGCTTTAGTTTCTGCATTTTTGGGGGCGAAGGTTGTGGAGTGCCTCTGTGACAGGCACTGGATCTTCAGGGGGCAGCAGATAGGAGTTAGAATGAGAGCTTTGCTGGTTGCCATGATCTATAATAAGGGTTTGAGCCTGTCTTGCCAGTCCAAGCAGTGCCACACTAGTGGTGAGATTATCAATTTTATGACTGTTGATGCTGAGAGGGTTGGCGACTTCGCTTGGTACATGCATGAACCGTGGATCATCATTCTAGAAGTTGCTTTGGCCCTCTTTATTTTGTATAAAAATCTTGGTCTTGGTGCAATCGCGACTTTAGTTGCAACTGTAATGGTTATGTTGGCAAATGTTCCTTTCCGAAAATTGCAAGAGAAGTTTCAAAAGAAACTAATGGAGTCAAAGGATGGAAGGATGAAGGCGACATCTGAGATTTTAAGGAACATGCGGATTCTCAAGCTTCAAGCATGGGAGAGTTTTTGTCAAAAATTATTGACCTCAGGAAGATTGAGACAGAATGGTTACGAAAAGCCCATCAACCTTCTTCCAGACACAATTTCAATGATAGCACAGACAAAGGTATCCCTTGAAAGAATTTCATCATTCCTTTCACTTGATGAGTTGAAGCCTGATGCTATAGACAACCTTCCTAGAGGCAAGTCAACCTTACTTTCTTGTATTCTGGGAGAAGTGCCCAAGATATCTGGTCTTCTTAAGTTGTGTGGGACAAAGGCCTATGTTTGTCAGTCACCGTGGATACAGAGTGGCAAGATAGAAGAAAACATATTGTTTGGTAAAGTGATGGACAGAGAAAGTGCTGTTGATGCTCATACCCACCTGTTCAAGGAATGCTTGATGACCCTCTTGAGGTCCAAAACAGTAATCTATGTCACTCATCAGGTGGAGTTCTTACCTGCTGCTGATATTATCTTGGTCATGAAAGATGGAAGGATCACTCAAGCTGGAGAGTTCAATGACATTATTAATTCAGGAACTGATTTTAAAAGTCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTCTGTTGAGGTAGGACCAGGTGAAAAAACAAGCACCAGCGAGGAAGATAACAATTCGACTAGTACTAATGGGGCTGTCAAAGAAGTAGACAACAACGATGTTGAGGATTGTAAAATAGATGAATTAGGTGTGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTCTCAGTGTACTGGAAATACATTACCACAGCATACGAAGGTGCTTTTGTGCCTTTTATATTGCTTGCACATACTCTTTTTCAACTCCTTCAAATCGGAAGCAATTACTGGATGGCTTGGGCGGCTCCTGTGTCAGCAGACGTGAAACCTCCTGTTACAAGCTCTATGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTTTGTGTCCTTTTCAGAGCTCTGCTTCTTGTAACAGCAGGGTACAAGACAGCCACTATACTCTTCCATAAAATGCACTTGTGCATTTTCCGTGCGCCCATGTCATTCTTCGATGCCACTCCAAGTGGGAGAATCTTAAACAGAGCTTCTACAGACCAAAATGCATTGGATGTGAACATATCAAATCAAGTTGCCTCCTTTGCCTACTCAATGATATGGCTTTTAGGATATATTGCAGTGATGTCTCAGGTGGCATGGCAGGTTTCCATCATATTTATACCTGTGATTACAGCCTGTGTTTGGTATCAGCAATATTATCTACCTTCAGCACGAGAACTATCAAGATTGGTTGGAGTATGCAAAGCTCCTGTGATACAACATTTTGCTGAAACAATTTCTGGATCAACTACTATTAGGAGCTTTGACCAAGGATCTAGATTCCGAGATATCAACATGGAACTGATGGATGGATATAGTCGGCCAACGTTCTACACCGTTTGTGCAATGCAATGGCTAAGCTTTCGTTTGGATATTTTGTCATCCATTACATTTGCATTGTTTTTAGTTTTCATGATCTCTGTTCCAGAAGGAATGATAGATCCAGGCATTGCGGGTTTAGCCGTCACATATGGAATTACCCTAAACGGTTTACAAACTGCACTTATATGGAATCTTTGCAATATGGAGAACAAGATAATATCAGTGGAGAGAATACTACAATATACTACTAGTATACCAAGTGAGCCTCCTCTGGTAATAGAATCTAATAGACCAGATCATTCCTGGCCATCACGAGGAAAAGTTGATATGCATGATCTTCAGGTGCGGTATGCTCCACACTTGCCACTTATGTTGCGGGGTCTCACATGTACCTTTCCTGGAGGAATTAAAACTGGGATTATGGGGAGAACTGGCAGTGGAAAGTCAACTCTTATACAAACTCTTTTCCGAATCGTTGATCCTGATGCTGGCCGGATTTTGATAGATGGCATCGATATCTCTTCTATTGGGTTGCATGATCTGCGGTCTAATCTAAGCATTATCCCTCAGGACCCAACCATGTTTGAAGGAACTGTAAGAAGCAATTTGGACCCACTTGAAGAGTACAAAGATGAACAAATTTGGGAGGCCTTGGATAAGTGCCAACTTGGAGATGAAGTTCGGAAGAAAGAAGGGAAGCTGGATTCTGCAGTTAGTGAAAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTCGTTTGCCTGGGCCGTGTGCTCCTCAAGAAAAGTAAGGTCCTGGTGCTTGATGAAGCTACTGCATCTGTTGATACGGCTACAGATAATCTGATTCAGCAGACCCTTCGGCATCACTTCTCAGACTGTACCGTCATTACTATTGCGCACCGAATATCTTCTGTTCTTAACAGTGACATGGTTCTTCTTCTAAGCAATGGGCTCCTTGAGGAATGTGATTCTCCTGCAAGATTGCTAGAAAACAAGTTATCAGCTTTTGCCCAACTTGTTGCGGAGTACACAATGAGATCGAATTCCACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1094

Amino Acids

121.72

Weight (kDa)

6.16

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	69 - 267	9.2e-19	ABC transporter transmembrane region
ABC_membrane	PF00664	534 - 772	5e-26	ABC transporter transmembrane region
ABC_tran	PF00005	867 - 1015	3.4e-28	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1712
AasI	GACNNNNNNGTC	1 cut(s)	3110
Acc16I	TGCGCA	1 cut(s)	3126
Acc36I	ACCTGC	2 cut(s)	1231, 1996
AccI	GTMKAC	2 cut(s)	1443, 2479
AccII	CGCG	1 cut(s)	623
AciI	CCGC	7 cut(s)	757, 1661, 2357, 2572, 2602, 2770, 3251
AclI	AACGTT	1 cut(s)	2231
AclWI	GGATC	7 cut(s)	380, 563, 1268, 2155, 2185, 2339, 2699
AcoI	YGGCCR	3 cut(s)	2225, 2531, 2716
AcsI	RAATTY	3 cut(s)	903, 2865, 3271
AcuI	CTGAAG	3 cut(s)	361, 2055, 2549
AfaI	GTAC	9 cut(s)	130, 539, 1420, 1550, 1790, 2617, 2852, 3109, 3257
AfiI	CCNNNNNNNGG	5 cut(s)	1153, 1176, 2046, 2540, 2714
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	1 cut(s)	2612
AhlI	ACTAGT	3 cut(s)	476, 1415, 2474
AjiI	CACGTC	2 cut(s)	290, 1681
AjnI	CCWGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
AleI	CACNNNNGTG	2 cut(s)	266, 477
AloI	GAACNNNNNNTCC	2 cut(s)	2889, 2921
Alw21I	GWGCWC	3 cut(s)	1330, 1768, 3003
Alw26I	GTCTC	3 cut(s)	814, 1995, 2612
AlwI	GGATC	7 cut(s)	380, 563, 1268, 2155, 2185, 2339, 2699
AlwNI	CAGNNNCTG	3 cut(s)	125, 369, 1304
AoxI	GGCC	9 cut(s)	180, 244, 579, 1041, 2225, 2531, 2716, 2874, 2992
ApeKI	GCWGC	4 cut(s)	385, 1226, 1498, 2977
ApoI	RAATTY	3 cut(s)	903, 2865, 3271
AseI	ATTAAT	2 cut(s)	170, 1293
Asp700I	GAANNNNTTC	2 cut(s)	51, 3136
AspLEI	GCGC	3 cut(s)	1351, 1843, 3127
AspS9I	GGNCC	9 cut(s)	87, 245, 580, 1179, 1370, 2797, 2836, 2992, 3019
AsuHPI	GGTGA	4 cut(s)	83, 494, 1050, 1388
AvaII	GGWCC	6 cut(s)	87, 1179, 1370, 2797, 2836, 3019
AxyI	CCTNAGG	2 cut(s)	808, 2793
BaeGI	GKGCMC	1 cut(s)	1005
BaeI	ACNNNNGTAYC	2 cut(s)	873, 906
BalI	TGGCCA	1 cut(s)	2533
BanII	GRGCYC	2 cut(s)	1768, 3183
BauI	CACGAG	2 cut(s)	2076, 2538
BbsI	GAAGAC	1 cut(s)	1010
Bbv12I	GWGCWC	3 cut(s)	1330, 1768, 3003
BbvI	GCAGC	4 cut(s)	397, 1213, 1510, 2989
BceAI	ACGGC	3 cut(s)	2351, 2979, 3072
BcgI	CGANNNNNNTGC	2 cut(s)	3068, 3102
BciT130I	CCWGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
BciVI	GTATCC	2 cut(s)	901, 1059
BcoDI	GTCTC	3 cut(s)	814, 1995, 2612
BcuI	ACTAGT	3 cut(s)	476, 1415, 2474
BfaI	CTAG	8 cut(s)	62, 477, 566, 960, 1416, 2181, 2475, 3215
BfmI	CTRYAG	4 cut(s)	945, 1896, 2934, 3060
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	2 cut(s)	1231, 1996
BfuI	GTATCC	2 cut(s)	901, 1059
BglI	GCCNNNNNGGC	1 cut(s)	1495
BisI	GCNGC	5 cut(s)	386, 1227, 1499, 1662, 2978
BlpI	GCTNAGC	1 cut(s)	2261
BlsI	GCNGC	5 cut(s)	387, 1228, 1500, 1663, 2979
BmcAI	AGTACT	1 cut(s)	1420
Bme1390I	CCNGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
Bme18I	GGWCC	6 cut(s)	87, 1179, 1370, 2797, 2836, 3019
BmgBI	CACGTC	2 cut(s)	290, 1681
BmgT120I	GGNCC	9 cut(s)	87, 245, 580, 1179, 1370, 2797, 2836, 2992, 3019
BmiI	GGNNCC	6 cut(s)	88, 89, 1665, 2799, 2838, 3182
BmrFI	CCNGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
BmrI	ACTGGG	1 cut(s)	2649
BmsI	GCATC	8 cut(s)	499, 931, 1123, 1849, 2701, 2745, 3053, 3100
BmuI	ACTGGG	1 cut(s)	2649
BpiI	GAAGAC	1 cut(s)	1010
BpmI	CTGGAG	5 cut(s)	134, 205, 1293, 2646, 2980
Bpu1102I	GCTNAGC	1 cut(s)	2261
BpuEI	CTTGAG	5 cut(s)	749, 1195, 1251, 2990, 3206
Bsa29I	ATCGAT	1 cut(s)	2739
BsaI	GGTCTC	1 cut(s)	2612
BsaJI	CCNNGG	5 cut(s)	551, 1061, 2173, 2877, 2989
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 2889, 2919, 2953, 2983
Bsc4I	CCNNNNNNNGG	5 cut(s)	1153, 1176, 2046, 2540, 2714
Bse1I	ACTGG	7 cut(s)	374, 457, 1556, 1652, 2644, 2662, 2963
Bse21I	CCTNAGG	2 cut(s)	808, 2793
Bse3DI	GCAATG	4 cut(s)	2256, 2261, 2352, 3181
BseBI	CCWGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
BseCI	ATCGAT	1 cut(s)	2739
BseDI	CCNNGG	5 cut(s)	551, 1061, 2173, 2877, 2989
BseGI	GGATG	6 cut(s)	721, 729, 1656, 1921, 2218, 2285
BseLI	CCNNNNNNNGG	5 cut(s)	1153, 1176, 2046, 2540, 2714
BseMI	GCAATG	4 cut(s)	2256, 2261, 2352, 3181
BseMII	CTCAG	7 cut(s)	504, 729, 822, 1557, 2006, 2807, 3114
BseNI	ACTGG	7 cut(s)	374, 457, 1556, 1652, 2644, 2662, 2963
BseRI	GAGGAG	2 cut(s)	2484, 2993
BseSI	GKGCMC	1 cut(s)	1005
BseXI	GCAGC	4 cut(s)	397, 1213, 1510, 2989
BsgI	GTGCAG	1 cut(s)	2388
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	9 cut(s)	182, 246, 581, 1043, 2227, 2533, 2718, 2876, 2994
BshVI	ATCGAT	1 cut(s)	2739
BsiHKAI	GWGCWC	3 cut(s)	1330, 1768, 3003
BsiSI	CCGG	1 cut(s)	2719
BslFI	GGGAC	2 cut(s)	73, 1048
BslI	CCNNNNNNNGG	5 cut(s)	1153, 1176, 2046, 2540, 2714
BsmAI	GTCTC	3 cut(s)	814, 1995, 2612
BsmFI	GGGAC	2 cut(s)	73, 1048
BsmI	GAATGC	1 cut(s)	1163
BsnI	GGCC	9 cut(s)	182, 246, 581, 1043, 2227, 2533, 2718, 2876, 2994
Bso31I	GGTCTC	1 cut(s)	2612
Bsp1286I	GDGCHC	5 cut(s)	1005, 1330, 1768, 3003, 3183
Bsp1720I	GCTNAGC	1 cut(s)	2261
Bsp68I	TCGCGA	1 cut(s)	623
BspACI	CCGC	7 cut(s)	757, 1661, 2357, 2572, 2602, 2770, 3251
BspANI	GGCC	9 cut(s)	182, 246, 581, 1043, 2227, 2533, 2718, 2876, 2994
BspCNI	CTCAG	7 cut(s)	505, 730, 821, 1556, 2005, 2806, 3113
BspDI	ATCGAT	1 cut(s)	2739
BspFNI	CGCG	1 cut(s)	623
BspHI	TCATGA	2 cut(s)	1245, 2316
BspLI	GGNNCC	6 cut(s)	88, 89, 1665, 2799, 2838, 3182
BspMAI	CTGCAG	1 cut(s)	2938
BspMI	ACCTGC	2 cut(s)	1231, 1996
BspPI	GGATC	7 cut(s)	380, 563, 1268, 2155, 2185, 2339, 2699
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	2612
BsrDI	GCAATG	4 cut(s)	2256, 2261, 2352, 3181
BsrI	ACTGG	7 cut(s)	374, 457, 1556, 1652, 2644, 2662, 2963
BssECI	CCNNGG	5 cut(s)	551, 1061, 2173, 2877, 2989
BssNAI	GTATAC	1 cut(s)	2480
BssSI	CACGAG	2 cut(s)	2076, 2538
BssT1I	CCWWGG	2 cut(s)	2173, 2877
Bst1107I	GTATAC	1 cut(s)	2480
Bst2BI	CACGAG	2 cut(s)	2076, 2538
Bst2UI	CCWGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
Bst6I	CTCTTC	4 cut(s)	1509, 1814, 2752, 2841
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	1 cut(s)	2767
BstC8I	GCNNGC	2 cut(s)	1605, 2716
BstDSI	CCRYGG	2 cut(s)	551, 1061
BstENI	CCTNNNNNAGG	1 cut(s)	1151
BstF5I	GGATG	6 cut(s)	721, 729, 1656, 1921, 2218, 2285
BstFNI	CGCG	1 cut(s)	623
BstHHI	GCGC	3 cut(s)	1351, 1843, 3127
BstMAI	GTCTC	3 cut(s)	814, 1995, 2612
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 453, 1133, 1346, 1495, 1661, 1946, 2363, 2767
BstNI	CCWGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
BstNSI	RCATGY	3 cut(s)	544, 757, 2616
BstSCI	CCNGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
BstSFI	CTRYAG	4 cut(s)	945, 1896, 2934, 3060
BstSLI	GKGCMC	1 cut(s)	1005
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	397, 1213, 1510, 2989
BstV2I	GAAGAC	1 cut(s)	1010
BstX2I	RGATCY	3 cut(s)	372, 2177, 2344
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	3 cut(s)	372, 2177, 2344
BstZ17I	GTATAC	1 cut(s)	2480
Bsu15I	ATCGAT	1 cut(s)	2739
Bsu36I	CCTNAGG	2 cut(s)	808, 2793
BsuI	GTATCC	2 cut(s)	901, 1059
BsuRI	GGCC	9 cut(s)	182, 246, 581, 1043, 2227, 2533, 2718, 2876, 2994
BsuTUI	ATCGAT	1 cut(s)	2739
BtgI	CCRYGG	2 cut(s)	551, 1061
BtrI	CACGTC	2 cut(s)	290, 1681
BtsCI	GGATG	6 cut(s)	721, 729, 1656, 1921, 2218, 2285
BtsI	GCAGTG	4 cut(s)	215, 473, 1989, 2668
BtsIMutI	CAGTG	9 cut(s)	215, 234, 367, 473, 1551, 1989, 2454, 2668, 3157
BtuMI	TCGCGA	1 cut(s)	623
BveI	ACCTGC	2 cut(s)	1231, 1996
Cac8I	GCNNGC	2 cut(s)	1605, 2716
CaiI	CAGNNNCTG	3 cut(s)	125, 369, 1304
CciI	TCATGA	2 cut(s)	1245, 2316
CfoI	GCGC	3 cut(s)	1351, 1843, 3127
Cfr13I	GGNCC	9 cut(s)	87, 245, 580, 1179, 1370, 2797, 2836, 2992, 3019
ClaI	ATCGAT	1 cut(s)	2739
CsiI	ACCWGGT	1 cut(s)	1372
Csp6I	GTAC	9 cut(s)	129, 538, 1419, 1549, 1789, 2616, 2851, 3108, 3256
CspCI	CAANNNNNGTGG	2 cut(s)	2580, 2615
CviQI	GTAC	9 cut(s)	129, 538, 1419, 1549, 1789, 2616, 2851, 3108, 3256
DraI	TTTAAA	1 cut(s)	1312
DrdI	GACNNNNNNGTC	1 cut(s)	3110
DseDI	GACNNNNNNGTC	1 cut(s)	3110
EaeI	YGGCCR	3 cut(s)	2225, 2531, 2716
Eam1104I	CTCTTC	4 cut(s)	1509, 1814, 2752, 2841
EarI	CTCTTC	4 cut(s)	1509, 1814, 2752, 2841
Ecl136II	GAGCTC	1 cut(s)	1766
Eco130I	CCWWGG	2 cut(s)	2173, 2877
Eco147I	AGGCCT	2 cut(s)	1043, 2876
Eco24I	GRGCYC	2 cut(s)	1768, 3183
Eco31I	GGTCTC	1 cut(s)	2612
Eco32I	GATATC	3 cut(s)	1011, 2194, 2743
Eco47I	GGWCC	6 cut(s)	87, 1179, 1370, 2797, 2836, 3019
Eco53kI	GAGCTC	1 cut(s)	1766
Eco57I	CTGAAG	3 cut(s)	361, 2055, 2549
Eco81I	CCTNAGG	2 cut(s)	808, 2793
EcoICRI	GAGCTC	1 cut(s)	1766
EcoNI	CCTNNNNNAGG	1 cut(s)	1151
EcoO109I	RGGNCCY	3 cut(s)	87, 2797, 3019
EcoRI	GAATTC	1 cut(s)	3271
EcoRII	CCWGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
EcoRV	GATATC	3 cut(s)	1011, 2194, 2743
EcoT14I	CCWWGG	2 cut(s)	2173, 2877
EcoT22I	ATGCAT	3 cut(s)	546, 1912, 2559
EcoT38I	GRGCYC	2 cut(s)	1768, 3183
ErhI	CCWWGG	2 cut(s)	2173, 2877
FalI	AAGNNNNNCTT	6 cut(s)	959, 991, 1145, 1177, 1485, 1517
FaqI	GGGAC	2 cut(s)	73, 1048
FauI	CCCGC	2 cut(s)	2350, 2595
FauNDI	CATATG	1 cut(s)	2374
FblI	GTMKAC	2 cut(s)	1443, 2479
Fnu4HI	GCNGC	5 cut(s)	386, 1227, 1499, 1662, 2978
FokI	GGATG	6 cut(s)	728, 736, 1663, 1928, 2225, 2272
FriOI	GRGCYC	2 cut(s)	1768, 3183
Fsp4HI	GCNGC	5 cut(s)	386, 1227, 1499, 1662, 2978
FspBI	CTAG	8 cut(s)	62, 477, 566, 960, 1416, 2181, 2475, 3215
FspI	TGCGCA	1 cut(s)	3126
GlaI	GCGC	3 cut(s)	1350, 1842, 3126
GluI	GCNGC	5 cut(s)	386, 1227, 1499, 1662, 2978
GsuI	CTGGAG	5 cut(s)	134, 205, 1293, 2646, 2980
HaeIII	GGCC	9 cut(s)	182, 246, 581, 1043, 2227, 2533, 2718, 2876, 2994
HapII	CCGG	1 cut(s)	2719
HhaI	GCGC	3 cut(s)	1351, 1843, 3127
Hin6I	GCGC	3 cut(s)	1349, 1841, 3125
HinP1I	GCGC	3 cut(s)	1349, 1841, 3125
HincII	GTYRAC	2 cut(s)	972, 2673
HindII	GTYRAC	2 cut(s)	972, 2673
HindIII	AAGCTT	3 cut(s)	767, 1338, 2263
HpaII	CCGG	1 cut(s)	2719
HphI	GGTGA	4 cut(s)	83, 494, 1050, 1388
Hpy166II	GTNNAC	9 cut(s)	225, 972, 1444, 1549, 1921, 2396, 2480, 2673, 3258
Hpy8I	GTNNAC	9 cut(s)	225, 972, 1444, 1549, 1921, 2396, 2480, 2673, 3258
Hpy99I	CGWCG	1 cut(s)	291
HpyCH4IV	ACGT	3 cut(s)	289, 1680, 2231
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 453, 1133, 1346, 1495, 1661, 1946, 2363, 2767
HpySE526I	ACGT	3 cut(s)	289, 1680, 2231
HspAI	GCGC	3 cut(s)	1349, 1841, 3125
KflI	GGGWCCC	1 cut(s)	87
LmnI	GCTCC	7 cut(s)	1325, 1669, 2116, 2163, 2584, 3006, 3186
Lsp1109I	GCAGC	4 cut(s)	397, 1213, 1510, 2989
LweI	GCATC	8 cut(s)	499, 931, 1123, 1849, 2701, 2745, 3053, 3100
MabI	ACCWGGT	1 cut(s)	1372
MaeI	CTAG	8 cut(s)	62, 477, 566, 960, 1416, 2181, 2475, 3215
MaeII	ACGT	3 cut(s)	289, 1680, 2231
MaeIII	GTNAC	9 cut(s)	142, 359, 830, 1056, 1198, 1693, 1777, 2368, 3152
MflI	RGATCY	3 cut(s)	372, 2177, 2344
MhlI	GDGCHC	5 cut(s)	1005, 1330, 1768, 3003, 3183
MlsI	TGGCCA	1 cut(s)	2533
MluNI	TGGCCA	1 cut(s)	2533
MlyI	GAGTC	4 cut(s)	13, 125, 131, 716
MmeI	TCCRAC	2 cut(s)	1717, 2077
Mox20I	TGGCCA	1 cut(s)	2533
Mph1103I	ATGCAT	3 cut(s)	546, 1912, 2559
MroXI	GAANNNNTTC	2 cut(s)	51, 3136
MscI	TGGCCA	1 cut(s)	2533
MslI	CAYNNNNRTG	3 cut(s)	266, 477, 2410
Msp20I	TGGCCA	1 cut(s)	2533
MspA1I	CMGCKG	1 cut(s)	112
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	2719
MspR9I	CCNGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
Mva1269I	GAATGC	1 cut(s)	1163
MvaI	CCWGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	9 cut(s)	212, 453, 1133, 1346, 1495, 1661, 1946, 2363, 2767
NdeI	CATATG	1 cut(s)	2374
NlaIV	GGNNCC	6 cut(s)	88, 89, 1665, 2799, 2838, 3182
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	5 cut(s)	359, 1056, 1198, 2368, 3152
NruI	TCGCGA	1 cut(s)	623
NsbI	TGCGCA	1 cut(s)	3126
NsiI	ATGCAT	3 cut(s)	546, 1912, 2559
NspI	RCATGY	3 cut(s)	544, 757, 2616
OliI	CACNNNNGTG	2 cut(s)	266, 477
PagI	TCATGA	2 cut(s)	1245, 2316
PceI	AGGCCT	2 cut(s)	1043, 2876
PciI	ACATGT	1 cut(s)	2612
PctI	GAATGC	1 cut(s)	1163
PdmI	GAANNNNTTC	2 cut(s)	51, 3136
PfoI	TCCNGGA	2 cut(s)	55, 2623
PkrI	GCNGC	5 cut(s)	387, 1228, 1500, 1663, 2979
PleI	GAGTC	4 cut(s)	12, 124, 130, 715
PpsI	GAGTC	4 cut(s)	12, 124, 130, 715
PpuMI	RGGWCCY	3 cut(s)	87, 2797, 3019
PscI	ACATGT	1 cut(s)	2612
PshBI	ATTAAT	2 cut(s)	170, 1293
PsiI	TTATAA	1 cut(s)	1712
Psp124BI	GAGCTC	1 cut(s)	1768
Psp1406I	AACGTT	1 cut(s)	2231
Psp5II	RGGWCCY	3 cut(s)	87, 2797, 3019
Psp6I	CCWGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
PspGI	CCWGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
PspN4I	GGNNCC	6 cut(s)	88, 89, 1665, 2799, 2838, 3182
PspPI	GGNCC	9 cut(s)	87, 245, 580, 1179, 1370, 2797, 2836, 2992, 3019
PspPPI	RGGWCCY	3 cut(s)	87, 2797, 3019
PstI	CTGCAG	1 cut(s)	2938
PstNI	CAGNNNCTG	3 cut(s)	125, 369, 1304
PsuI	RGATCY	3 cut(s)	372, 2177, 2344
PvuII	CAGCTG	1 cut(s)	112
RruI	TCGCGA	1 cut(s)	623
RsaI	GTAC	9 cut(s)	130, 539, 1420, 1550, 1790, 2617, 2852, 3109, 3257
RsaNI	GTAC	9 cut(s)	129, 538, 1419, 1549, 1789, 2616, 2851, 3108, 3256
RseI	CAYNNNNRTG	3 cut(s)	266, 477, 2410
SacI	GAGCTC	1 cut(s)	1768
SatI	GCNGC	5 cut(s)	386, 1227, 1499, 1662, 2978
Sau96I	GGNCC	9 cut(s)	87, 245, 580, 1179, 1370, 2797, 2836, 2992, 3019
ScaI	AGTACT	1 cut(s)	1420
SchI	GAGTC	4 cut(s)	13, 125, 131, 716
ScrFI	CCNGG	8 cut(s)	57, 184, 1374, 2349, 2530, 2625, 2990, 3023
SduI	GDGCHC	5 cut(s)	1005, 1330, 1768, 3003, 3183
SexAI	ACCWGGT	1 cut(s)	1372
SfaNI	GCATC	8 cut(s)	499, 931, 1123, 1849, 2701, 2745, 3053, 3100
SfcI	CTRYAG	4 cut(s)	945, 1896, 2934, 3060
SinI	GGWCC	6 cut(s)	87, 1179, 1370, 2797, 2836, 3019
SmiMI	CAYNNNNRTG	3 cut(s)	266, 477, 2410
SmlI	CTYRAG	6 cut(s)	764, 1022, 1174, 1266, 3005, 3185
SmoI	CTYRAG	6 cut(s)	764, 1022, 1174, 1266, 3005, 3185
SpeI	ACTAGT	3 cut(s)	476, 1415, 2474
SseBI	AGGCCT	2 cut(s)	1043, 2876
SsiI	CCGC	7 cut(s)	757, 1661, 2357, 2572, 2602, 2770, 3251
SspI	AATATT	1 cut(s)	2060
SspMI	CTAG	8 cut(s)	62, 477, 566, 960, 1416, 2181, 2475, 3215
SstI	GAGCTC	1 cut(s)	1768
StuI	AGGCCT	2 cut(s)	1043, 2876
StyD4I	CCNGG	8 cut(s)	55, 182, 1372, 2347, 2528, 2623, 2988, 3021
StyI	CCWWGG	2 cut(s)	2173, 2877
TaiI	ACGT	3 cut(s)	292, 1683, 2234
TaqI	TCGA	5 cut(s)	258, 1412, 1857, 2739, 3269
TatI	WGTACW	4 cut(s)	1418, 1548, 2850, 3255
TauI	GCSGC	1 cut(s)	1664
TscAI	CASTG	9 cut(s)	222, 234, 374, 473, 1551, 1989, 2454, 2668, 3157
TseFI	GTSAC	5 cut(s)	359, 1056, 1198, 2368, 3152
TseI	GCWGC	4 cut(s)	385, 1226, 1498, 2977
Tsp45I	GTSAC	5 cut(s)	359, 1056, 1198, 2368, 3152
TspGWI	ACGGA	1 cut(s)	1826
TspRI	CASTG	9 cut(s)	222, 234, 374, 473, 1551, 1989, 2454, 2668, 3157
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	6 cut(s)	87, 1179, 1370, 2797, 2836, 3019
VspI	ATTAAT	2 cut(s)	170, 1293
XagI	CCTNNNNNAGG	1 cut(s)	1151
XapI	RAATTY	3 cut(s)	903, 2865, 3271
XbaI	TCTAGA	2 cut(s)	565, 2180
XceI	RCATGY	3 cut(s)	544, 757, 2616
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 2526
XmiI	GTMKAC	2 cut(s)	1443, 2479
XmnI	GAANNNNTTC	2 cut(s)	51, 3136
XspI	CTAG	8 cut(s)	62, 477, 566, 960, 1416, 2181, 2475, 3215
ZrmI	AGTACT	1 cut(s)	1420
Zsp2I	ATGCAT	3 cut(s)	546, 1912, 2559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.