Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

7145469 .. 7146894

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAATGTTTGGTGGCCCTCTTGAGTTCCAAAACTGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTATCTTGGTCATGAAAGATGGAAGGATCACTCAAGCTGGAAAGTTCAATGACATTATTAATTCAGGAACTGATTTTAAAGATCTCGTGGGAGCACACAATGAAGCTTTGTCTGCACTTGATTCTGTTGGGGTAGGGCCAGGTGAAAAAACAAGTATCCGCAAGGAAGATAACAATTCGACTAGTACTAATGGGGCTGTCAAAGAAGTAGACAACAACGATGTTGAGGATTGTAAAATAGATGATTTAGGTGTGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTCTCAGTGTACTGGAAATACATTACCACAGCGTACGGAGGTGCTTTTGTGCCTTTTATATTGCTTGCACATACTCTTTTTCAACTCCTTCAAATTGGAAGCAATTACTGGATGGCTTGGGCTACTCCTGTGTCAGCAGACGTGAAACCTACTGTTACAAGCTCTATGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTATGTGTCCTTTTCAGAGCTCTGCTTCTTGTAACGGCAGGATACAAGACAGCCACTATACTCTTCCATAAAATGCACTTGTGCATTTTCCGTGCTCCCATGTCATTCTTCGATGCCACTCCAAGTGGAAGAATCTTAAACAGAGCTTCTACAGACCAAAATGCATTGGATAAGAACATATCAAATCAAGTTGCCTCCTTTTCCTTCACAGTGATACGGCTTTTAGGAATTATTGCCGTGATGTCTCAGGTGGCATGGCAGGTTTCCATCATATTTATACCTGTGATTACAGCCTGTGTTTGGTATCAGGTAATACTTCTGACTTTGTCAGAATTCTGTTACTTGGTGTGTTCTGCTGATCCATATGTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

322

Amino Acids

35.23

Weight (kDa)

5.55

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	150 - 304	5e-16	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
Acc36I	ACCTGC	2 cut(s)	79, 844
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	116, 947
AcsI	RAATTY	1 cut(s)	926
AfaI	GTAC	3 cut(s)	268, 398, 422
AfiI	CCNNNNNNNGG	1 cut(s)	894
AgsI	TTSAA	4 cut(s)	130, 356, 470, 479
AhlI	ACTAGT	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	6 cut(s)	119, 188, 349, 549, 614, 740
AluI	AGCT	6 cut(s)	119, 188, 349, 549, 614, 740
Alw21I	GWGCWC	3 cut(s)	178, 616, 691
Alw26I	GTCTC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	116, 947
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	15, 218
ApeKI	GCWGC	2 cut(s)	74, 346
ApoI	RAATTY	1 cut(s)	926
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	16, 218
AsuHPI	GGTGA	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	3 cut(s)	178, 616, 691
BbvI	GCAGC	2 cut(s)	61, 358
BccI	CCATC	3 cut(s)	95, 493, 869
BceAI	ACGGC	3 cut(s)	645, 815, 827
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	2 cut(s)	248, 629
BcoDI	GTCTC	1 cut(s)	843
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	2 cut(s)	79, 844
BfuI	GTATCC	2 cut(s)	248, 629
BglI	GCCNNNNNGGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	2 cut(s)	75, 347
BlsI	GCNGC	2 cut(s)	76, 348
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	16, 218
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	697
BpuEI	CTTGAG	2 cut(s)	43, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	894
Bse1I	ACTGG	2 cut(s)	404, 500
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	405, 854
BseNI	ACTGG	2 cut(s)	404, 500
BseXI	GCAGC	2 cut(s)	61, 358
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	17, 220
BsiHKAI	GWGCWC	3 cut(s)	178, 616, 691
BsiWI	CGTACG	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	894
BsmAI	GTCTC	1 cut(s)	843
BsnI	GGCC	2 cut(s)	17, 220
Bsp1286I	GDGCHC	3 cut(s)	178, 616, 691
Bsp143I	GATC	3 cut(s)	108, 163, 952
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	17, 220
BspCNI	CTCAG	2 cut(s)	404, 853
BspHI	TCATGA	1 cut(s)	93
BspMI	ACCTGC	2 cut(s)	79, 844
BspPI	GGATC	2 cut(s)	116, 947
BsrI	ACTGG	2 cut(s)	404, 500
BssMI	GATC	3 cut(s)	108, 163, 952
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	37, 541, 805
Bst6I	CTCTTC	2 cut(s)	357, 662
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	391, 840
BstF5I	GGATG	1 cut(s)	504
BstKTI	GATC	3 cut(s)	111, 166, 955
BstMAI	GTCTC	1 cut(s)	843
BstMBI	GATC	3 cut(s)	108, 163, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 343
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	61, 358
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	2 cut(s)	248, 629
BsuRI	GGCC	2 cut(s)	17, 220
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	399, 810
BveI	ACCTGC	2 cut(s)	79, 844
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	16, 218
Csp6I	GTAC	3 cut(s)	267, 397, 421
CviAII	CATG	4 cut(s)	94, 694, 849, 966
CviQI	GTAC	3 cut(s)	267, 397, 421
DdeI	CTNAG	2 cut(s)	391, 840
DpnI	GATC	3 cut(s)	110, 165, 954
DpnII	GATC	3 cut(s)	108, 163, 952
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	357, 662
EarI	CTCTTC	2 cut(s)	357, 662
Ecl136II	GAGCTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	926
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	4 cut(s)	97, 697, 852, 969
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	93, 693, 848, 965
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	75, 347
FokI	GGATG	1 cut(s)	511
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	2 cut(s)	75, 347
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	75, 347
HaeIII	GGCC	2 cut(s)	17, 220
Hin1II	CATG	4 cut(s)	97, 697, 852, 969
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	203, 726
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	292, 397
Hpy188I	TCNGA	3 cut(s)	611, 915, 925
Hpy188III	TCNNGA	4 cut(s)	22, 94, 147, 356
Hpy8I	GTNNAC	2 cut(s)	292, 397
HpyAV	CCTTC	3 cut(s)	99, 485, 808
HpyCH4III	ACNGT	3 cut(s)	37, 541, 805
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	197, 455, 670, 678, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 343
HpyF3I	CTNAG	2 cut(s)	391, 840
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	4 cut(s)	97, 697, 852, 969
Kzo9I	GATC	3 cut(s)	108, 163, 952
LmnI	GCTCC	2 cut(s)	173, 694
Lsp1109I	GCAGC	2 cut(s)	61, 358
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	5 cut(s)	46, 541, 625, 932, 961
MalI	GATC	3 cut(s)	110, 165, 954
MboI	GATC	3 cut(s)	108, 163, 952
MboII	GAAGA	6 cut(s)	260, 371, 374, 649, 694, 735
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	3 cut(s)	178, 616, 691
MluCI	AATT	7 cut(s)	142, 256, 480, 490, 561, 822, 926
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	4 cut(s)	29, 301, 419, 799
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	3 cut(s)	141, 159, 731
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	194, 343
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	3 cut(s)	108, 163, 952
NlaIII	CATG	4 cut(s)	97, 697, 852, 969
NmuCI	GTSAC	2 cut(s)	46, 961
NsiI	ATGCAT	1 cut(s)	760
PagI	TCATGA	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	203, 726
Pfl23II	CGTACG	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	919
PkrI	GCNGC	2 cut(s)	76, 348
PshBI	ATTAAT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspLI	CGTACG	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	16, 218
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	919
RsaI	GTAC	3 cut(s)	268, 398, 422
RsaNI	GTAC	3 cut(s)	267, 397, 421
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	141, 159, 731
SatI	GCNGC	2 cut(s)	75, 347
Sau3AI	GATC	3 cut(s)	108, 163, 952
Sau96I	GGNCC	2 cut(s)	16, 218
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	3 cut(s)	178, 616, 691
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	22, 114
SmoI	CTYRAG	2 cut(s)	22, 114
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	7 cut(s)	142, 256, 480, 490, 561, 822, 926
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	37, 541, 805
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	260, 705
TasI	AATT	7 cut(s)	142, 256, 480, 490, 561, 822, 926
TatI	WGTACW	2 cut(s)	266, 396
TfiI	GAWTC	2 cut(s)	203, 726
Tru1I	TTAA	3 cut(s)	141, 159, 731
Tru9I	TTAA	3 cut(s)	141, 159, 731
TscAI	CASTG	2 cut(s)	399, 810
TseFI	GTSAC	2 cut(s)	46, 961
TseI	GCWGC	2 cut(s)	74, 346
Tsp45I	GTSAC	2 cut(s)	46, 961
TspDTI	ATGAA	2 cut(s)	110, 198
TspGWI	ACGGA	2 cut(s)	438, 674
TspRI	CASTG	2 cut(s)	399, 810
Tth111I	GACNNNGTC	1 cut(s)	919
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	926
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.