Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8175670.1

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 668

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8175670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

atgagtcctttaatcgctgttggcaataagaaaacattaaaccttgaagatgttcctggactagacaagggtgatagtgtagttgggtcccttccaatttttagaaataagctggagtcagagtgtggtactcttagcagagttaccacacttcatctggtaaaggcattaatcttctcggcctggagagagattctttggacagctttgtttgcactgctgtccacagtggctacttatgttggcccatatctaatcgacacctttgtgcaatacctcaatgggcgacgtgagttcagaaatcagggctatgctttagtttctgcatttttgggggcgaaggttgtggaatgcctctgtgacaggcactggatcttcagggggcagcagataggagttagaatgagagctttactggttgccatgatctataataagggtttgagcctgtcttgccagtccaagcagtgccacactagtggtgagattatcaattttatgactgttgatgctgagagggttggcgacttcgcttggtacatgcatgaaccatggatcatcattctagaagttgctttggccctctttatcttgtataaaaatcttggtctcggtgcaatcgcgactttagttgcaactgtaatggttatgttggcaaatgttcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

222

Amino Acids

24.7

Weight (kDa)

8.6

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	623
AclWI	GGATC	2 cut(s)	380, 563
AcuI	CTGAAG	1 cut(s)	361
AfaI	GTAC	2 cut(s)	130, 539
AgsI	TTSAA	1 cut(s)	47
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	55, 182
AleI	CACNNNNGTG	2 cut(s)	266, 477
AluBI	AGCT	3 cut(s)	112, 206, 410
AluI	AGCT	3 cut(s)	112, 206, 410
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	2 cut(s)	380, 563
AlwNI	CAGNNNCTG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	180, 244, 579
ApeKI	GCWGC	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	87, 245, 580
AsuHPI	GGTGA	2 cut(s)	83, 494
AvaII	GGWCC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	57, 184
BcoDI	GTCTC	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	62, 477, 566
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	57, 184
Bme18I	GGWCC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	3 cut(s)	87, 245, 580
BmiI	GGNNCC	2 cut(s)	88, 89
BmrFI	CCNGG	2 cut(s)	57, 184
BmsI	GCATC	1 cut(s)	499
BpmI	CTGGAG	2 cut(s)	134, 205
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	3 cut(s)	374, 420, 457
BseBI	CCWGG	2 cut(s)	57, 184
BseDI	CCNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	374, 420, 457
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	3 cut(s)	182, 246, 581
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	182, 246, 581
Bso31I	GGTCTC	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	372, 426, 555
Bsp19I	CCATGG	1 cut(s)	551
Bsp68I	TCGCGA	1 cut(s)	623
BspANI	GGCC	3 cut(s)	182, 246, 581
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	2 cut(s)	88, 89
BspPI	GGATC	2 cut(s)	380, 563
BspTNI	GGTCTC	1 cut(s)	614
BsrI	ACTGG	3 cut(s)	374, 420, 457
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	3 cut(s)	372, 426, 555
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	57, 184
Bst4CI	ACNGT	3 cut(s)	229, 505, 640
BstDEI	CTNAG	2 cut(s)	134, 513
BstDSI	CCRYGG	1 cut(s)	551
BstFNI	CGCG	1 cut(s)	623
BstKTI	GATC	3 cut(s)	375, 429, 558
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	3 cut(s)	372, 426, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 453
BstNI	CCWGG	2 cut(s)	57, 184
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	2 cut(s)	55, 182
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	372
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	182, 246, 581
BtgI	CCRYGG	1 cut(s)	551
BtrI	CACGTC	1 cut(s)	290
BtsI	GCAGTG	2 cut(s)	215, 473
BtsIMutI	CAGTG	4 cut(s)	215, 234, 367, 473
BtuMI	TCGCGA	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	87, 245, 580
Csp6I	GTAC	2 cut(s)	129, 538
CviAII	CATG	4 cut(s)	424, 541, 545, 552
CviJI	RGCY	9 cut(s)	112, 182, 206, 233, 246, 309, 410, 447, 581
CviKI_1	RGCY	9 cut(s)	112, 182, 206, 233, 246, 309, 410, 447, 581
CviQI	GTAC	2 cut(s)	129, 538
DdeI	CTNAG	2 cut(s)	134, 513
DpnI	GATC	3 cut(s)	374, 428, 557
DpnII	GATC	3 cut(s)	372, 426, 555
Eco130I	CCWWGG	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	55, 182
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	4 cut(s)	427, 544, 548, 555
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	4 cut(s)	423, 540, 544, 551
Fnu4HI	GCNGC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	3 cut(s)	62, 477, 566
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	134, 205
HaeIII	GGCC	3 cut(s)	182, 246, 581
Hin1II	CATG	4 cut(s)	427, 544, 548, 555
HinfI	GANTC	3 cut(s)	4, 116, 193
HphI	GGTGA	2 cut(s)	83, 494
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	121, 299
Hpy188III	TCNNGA	2 cut(s)	566, 622
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	101, 334
HpyCH4III	ACNGT	3 cut(s)	229, 505, 640
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	215, 271, 326, 544, 617, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 453
HpyF3I	CTNAG	2 cut(s)	134, 513
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	427, 544, 548, 555
KflI	GGGWCCC	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	372, 426, 555
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	62, 477, 566
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	142, 359
MalI	GATC	3 cut(s)	374, 428, 557
MboI	GATC	3 cut(s)	372, 426, 555
MboII	GAAGA	3 cut(s)	59, 166, 367
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	2 cut(s)	96, 493
MlyI	GAGTC	2 cut(s)	13, 125
MnlI	CCTC	4 cut(s)	287, 365, 510, 593
Mph1103I	ATGCAT	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	3 cut(s)	11, 38, 170
MslI	CAYNNNNRTG	2 cut(s)	266, 477
MspR9I	CCNGG	2 cut(s)	57, 184
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	57, 184
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	212, 453
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	372, 426, 555
NlaIII	CATG	4 cut(s)	427, 544, 548, 555
NlaIV	GGNNCC	2 cut(s)	88, 89
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	359
NruI	TCGCGA	1 cut(s)	623
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	1 cut(s)	544
OliI	CACNNNNGTG	2 cut(s)	266, 477
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	12, 124
PpsI	GAGTC	2 cut(s)	12, 124
PpuMI	RGGWCCY	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	55, 182
PspGI	CCWGG	2 cut(s)	55, 182
PspN4I	GGNNCC	2 cut(s)	88, 89
PspPI	GGNCC	3 cut(s)	87, 245, 580
PspPPI	RGGWCCY	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	372
RruI	TCGCGA	1 cut(s)	623
RsaI	GTAC	2 cut(s)	130, 539
RsaNI	GTAC	2 cut(s)	129, 538
RseI	CAYNNNNRTG	2 cut(s)	266, 477
SaqAI	TTAA	3 cut(s)	11, 38, 170
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	3 cut(s)	372, 426, 555
Sau96I	GGNCC	3 cut(s)	87, 245, 580
SchI	GAGTC	2 cut(s)	13, 125
ScrFI	CCNGG	2 cut(s)	57, 184
SetI	ASST	8 cut(s)	45, 114, 208, 266, 279, 292, 345, 412
SfaNI	GCATC	1 cut(s)	499
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	266, 477
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	2 cut(s)	96, 493
SspMI	CTAG	3 cut(s)	62, 477, 566
StyD4I	CCNGG	2 cut(s)	55, 182
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	3 cut(s)	229, 505, 640
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	96, 493
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	11, 38, 170
Tru9I	TTAA	3 cut(s)	11, 38, 170
TscAI	CASTG	4 cut(s)	222, 234, 374, 473
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	143, 561
TspRI	CASTG	4 cut(s)	222, 234, 374, 473
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	3 cut(s)	62, 477, 566
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.