Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

33236577 .. 33237854

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACAGAGAAAGGTACAAGGGGGCTCTTGAAGCAAGTTCGTTGAAGAAGGACCTGGAAATTCTATCATTTGGTGATCAGATGGTTATAGGGGAAAGGAGAATCAATTTAACTTTGTACCAAGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTTATACAGGATCTCACATTTTCAAAGGAATGCTTGATGGGCCTCTTGAGTCAAAAATAGTAATATATGTCACTCATCAAGTGAAGTTCTTACCTGTTGTTGATATTGTCTTGGTCATGAAAGACAGAAAGATCACTCAAGCTGGAAAGTTCAATGACATTCTTAATTCAGGAACTGATTTTATGGATCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTCTGTTGGGGTAGGGCCGGTTGAAAAAACAAGCATCAGCAAAGAAGATAACAATTCGGCTAGTACTACTGGGGCTGTCCAAAAAGTAGACAACAGAGATGTTCAAGATAGTAAAATAGATGATTTAGGCGGGCCAAAAGAGAAAGGTAAGGTTGGGTTTTCAGTGTACTGGAAATACATTACCACAGCGTATGGAGGAGCTCTCTTGCCTTTTATATTACTTGCACATATTATCTTTCAACTCCTTCAAATTGGAAGCAATTCCTGGATGGCTTGGGCAACTCCTATGTCAGCAGATGTGAAACCAACTGTTACAAGCTCTACGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTTTCCACTATACTCTTTTATAAAATGCACTTGTGCATATTCCGTGCTCCCATGTCATTCTTCGATGCCACTCCAAGTAGACGAATCTTAAACAGAGTAAGCAAAACATATTTAATATATTGCTTGATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

297

Amino Acids

32.82

Weight (kDa)

6.22

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	725, 780
AccI	GTMKAC	2 cut(s)	483, 838
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	3 cut(s)	143, 187, 363
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	4 cut(s)	17, 119, 460, 563
AgsI	TTSAA	8 cut(s)	32, 46, 193, 322, 419, 500, 635, 644
AjnI	CCWGG	2 cut(s)	54, 659
AluBI	AGCT	4 cut(s)	311, 380, 596, 714
AluI	AGCT	4 cut(s)	311, 380, 596, 714
Alw21I	GWGCWC	3 cut(s)	370, 598, 808
AlwI	GGATC	3 cut(s)	143, 187, 363
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	209, 410, 527
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	52, 209, 410, 527
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	28, 598
Bbv12I	GWGCWC	3 cut(s)	370, 598, 808
BccI	CCATC	3 cut(s)	76, 200, 658
BciT130I	CCWGG	2 cut(s)	56, 661
BclI	TGATCA	1 cut(s)	76
BfaI	CTAG	1 cut(s)	456
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	56, 661
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	4 cut(s)	52, 209, 410, 527
BmrFI	CCNGG	2 cut(s)	56, 661
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	4 cut(s)	115, 157, 438, 814
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
BpuEI	CTTGAG	2 cut(s)	236, 291
BsaBI	GATNNNNATC	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	469, 569
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	56, 661
BseGI	GGATG	1 cut(s)	669
BseJI	GATNNNNATC	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	469, 569
BseRI	GAGGAG	1 cut(s)	606
BshFI	GGCC	3 cut(s)	211, 412, 529
BsiHKAI	GWGCWC	3 cut(s)	370, 598, 808
BsiSI	CCGG	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	3 cut(s)	211, 412, 529
Bsp1286I	GDGCHC	4 cut(s)	28, 370, 598, 808
Bsp143I	GATC	5 cut(s)	76, 148, 179, 300, 355
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	3 cut(s)	211, 412, 529
BspHI	TCATGA	1 cut(s)	285
BspPI	GGATC	3 cut(s)	143, 187, 363
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	469, 569
BssAI	RCCGGY	1 cut(s)	412
BssMI	GATC	5 cut(s)	76, 148, 179, 300, 355
Bst2UI	CCWGG	2 cut(s)	56, 661
Bst4CI	ACNGT	1 cut(s)	706
BstC8I	GCNNGC	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	5 cut(s)	79, 151, 182, 303, 358
BstMBI	GATC	5 cut(s)	76, 148, 179, 300, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 167, 208, 386
BstNI	CCWGG	2 cut(s)	56, 661
BstSCI	CCNGG	2 cut(s)	54, 659
BstX2I	RGATCY	2 cut(s)	179, 355
BstYI	RGATCY	2 cut(s)	179, 355
BsuRI	GGCC	3 cut(s)	211, 412, 529
BtsCI	GGATG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	527
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	4 cut(s)	52, 209, 410, 527
Csp6I	GTAC	4 cut(s)	16, 118, 459, 562
CviAII	CATG	2 cut(s)	286, 811
CviQI	GTAC	4 cut(s)	16, 118, 459, 562
DpnI	GATC	5 cut(s)	78, 150, 181, 302, 357
DpnII	GATC	5 cut(s)	76, 148, 179, 300, 355
Ecl136II	GAGCTC	1 cut(s)	596
Eco24I	GRGCYC	2 cut(s)	28, 598
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	54, 659
EcoRV	GATATC	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	28, 598
FaeI	CATG	2 cut(s)	289, 814
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	2 cut(s)	285, 810
FauI	CCCGC	1 cut(s)	518
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	483, 838
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	2 cut(s)	28, 598
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	211, 412, 529
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	289, 814
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	4 cut(s)	102, 218, 395, 843
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	484, 562, 839
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	5 cut(s)	29, 215, 286, 339, 500
Hpy8I	GTNNAC	3 cut(s)	484, 562, 839
HpyAV	CCTTC	2 cut(s)	43, 650
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	3 cut(s)	620, 787, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 167, 208, 386
Hsp92II	CATG	2 cut(s)	289, 814
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	76, 148, 179, 300, 355
LmnI	GCTCC	3 cut(s)	365, 593, 811
LweI	GCATC	4 cut(s)	115, 157, 438, 814
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	238, 706
MalI	GATC	5 cut(s)	78, 150, 181, 302, 357
MboI	GATC	5 cut(s)	76, 148, 179, 300, 355
MboII	GAAGA	3 cut(s)	58, 452, 811
MflI	RGATCY	2 cut(s)	179, 355
MhlI	GDGCHC	4 cut(s)	28, 370, 598, 808
MluCI	AATT	7 cut(s)	60, 106, 334, 448, 645, 655, 726
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	2 cut(s)	222, 584
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	4 cut(s)	110, 333, 848, 872
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	56, 661
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	56, 661
MwoI	GCNNNNNNNGC	4 cut(s)	32, 167, 208, 386
NdeII	GATC	5 cut(s)	76, 148, 179, 300, 355
NlaIII	CATG	2 cut(s)	289, 814
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	285
PctI	GAATGC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	102, 395, 843
PfoI	TCCNGGA	1 cut(s)	659
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	52
PsiI	TTATAA	2 cut(s)	725, 780
Psp124BI	GAGCTC	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	54, 659
PspGI	CCWGG	2 cut(s)	54, 659
PspPI	GGNCC	4 cut(s)	52, 209, 410, 527
PspPPI	RGGWCCY	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	179, 355
RsaI	GTAC	4 cut(s)	17, 119, 460, 563
RsaNI	GTAC	4 cut(s)	16, 118, 459, 562
SacI	GAGCTC	1 cut(s)	598
SaqAI	TTAA	4 cut(s)	110, 333, 848, 872
Sau3AI	GATC	5 cut(s)	76, 148, 179, 300, 355
Sau96I	GGNCC	4 cut(s)	52, 209, 410, 527
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	56, 661
SduI	GDGCHC	4 cut(s)	28, 370, 598, 808
SetI	ASST	9 cut(s)	17, 57, 265, 313, 382, 544, 549, 598, 716
SfaNI	GCATC	4 cut(s)	115, 157, 438, 814
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	215, 306
SmoI	CTYRAG	2 cut(s)	215, 306
Sse9I	AATT	7 cut(s)	60, 106, 334, 448, 645, 655, 726
SsiI	CCGC	1 cut(s)	525
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	598
StyD4I	CCNGG	2 cut(s)	54, 659
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	822
TasI	AATT	7 cut(s)	60, 106, 334, 448, 645, 655, 726
TatI	WGTACW	2 cut(s)	458, 561
TfiI	GAWTC	3 cut(s)	102, 395, 843
Tru1I	TTAA	4 cut(s)	110, 333, 848, 872
Tru9I	TTAA	4 cut(s)	110, 333, 848, 872
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	302, 390
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	2 cut(s)	483, 838
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.