Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Reverse (-)

15616649 .. 15618041

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTTCTAGTGACCTCTCTCTCCCGTTTGCATGTTTTCCTCGACGAACCAAATCGAGCTCGATTCTCTAGCTCGAGCAAACAAATTTATTCCCAACGGATAGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCCGAGGAATGTTTGGTGGCCCTCTTGAGTTCCAAAACTGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTATCTTGGTCATGAAAGATGGAAGGATCACTCAAGCTGGAAAGTTCAATGACATTATTAATTCGGGAACTGATTTTAAAGATCTCGAAGATAACAATTCGACTAGTACTAATGGGGCTGTCAAAGAAGTAGACAACAACGATGTTGAGGATTGTAAAATAGATGATTTAGGTGTGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTCTCGGTGTATCGGAAATACATTACCACGGCGTACGGAGGTGCTTTTGTGCCTTTTATATTGCTTGCACATACTCTTTTTCAACTCCTTCAAATTGGAAGCAATTACTTGGATGGCTTGGGCTACTCCTGTGTCGCAGACGTGAAACCTACTGTTACAAGCTCTATGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTATGTGTCCTTTTCGAGCTCGCTTCTTGTAACGGCAGGATACAAGACAGCCACTATACTCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

248

Amino Acids

27.34

Weight (kDa)

5.03

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	2 cut(s)	352, 506
AgsI	TTSAA	5 cut(s)	151, 292, 440, 554, 563
AhlI	ACTAGT	1 cut(s)	347
AjiI	CACGTC	1 cut(s)	613
AluBI	AGCT	6 cut(s)	59, 72, 281, 433, 633, 697
AluI	AGCT	6 cut(s)	59, 72, 281, 433, 633, 697
Alw21I	GWGCWC	2 cut(s)	61, 699
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	236, 430
ApoI	RAATTY	1 cut(s)	84
AseI	ATTAAT	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	61, 699
Bbv12I	GWGCWC	2 cut(s)	61, 699
BbvI	GCAGC	2 cut(s)	223, 442
BccI	CCATC	2 cut(s)	257, 578
BceAI	ACGGC	2 cut(s)	516, 727
BciVI	GTATCC	1 cut(s)	711
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	3 cut(s)	8, 69, 348
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	711
BglI	GCCNNNNNGGC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	2 cut(s)	237, 431
BlsI	GCNGC	2 cut(s)	238, 432
BmcAI	AGTACT	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	73
BmgBI	CACGTC	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	205, 261
BsaJI	CCNNGG	2 cut(s)	162, 498
BseDI	CCNNGG	2 cut(s)	162, 498
BseGI	GGATG	2 cut(s)	158, 589
BseXI	GCAGC	2 cut(s)	223, 442
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	61, 699
BsiHKCI	CYCGRG	1 cut(s)	73
BsiWI	CGTACG	1 cut(s)	504
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	61, 699
Bsp143I	GATC	2 cut(s)	270, 325
BspANI	GGCC	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	162, 498
BssMI	GATC	2 cut(s)	270, 325
Bst4CI	ACNGT	2 cut(s)	199, 625
Bst6I	CTCTTC	2 cut(s)	441, 744
BstC8I	GCNNGC	2 cut(s)	537, 699
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	158, 589
BstKTI	GATC	2 cut(s)	273, 328
BstMBI	GATC	2 cut(s)	270, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	223, 442
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	158, 589
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	537, 699
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	351, 505
CviAII	CATG	3 cut(s)	32, 143, 256
CviQI	GTAC	2 cut(s)	351, 505
DpnI	GATC	2 cut(s)	272, 327
DpnII	GATC	2 cut(s)	270, 325
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	441, 744
EarI	CTCTTC	2 cut(s)	441, 744
Ecl136II	GAGCTC	2 cut(s)	59, 697
Eco24I	GRGCYC	2 cut(s)	61, 699
Eco53kI	GAGCTC	2 cut(s)	59, 697
Eco88I	CYCGRG	1 cut(s)	73
EcoICRI	GAGCTC	2 cut(s)	59, 697
EcoT38I	GRGCYC	2 cut(s)	61, 699
FaeI	CATG	3 cut(s)	35, 146, 259
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	3 cut(s)	31, 142, 255
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	237, 431
FokI	GGATG	2 cut(s)	145, 596
FriOI	GRGCYC	2 cut(s)	61, 699
Fsp4HI	GCNGC	2 cut(s)	237, 431
FspBI	CTAG	3 cut(s)	8, 69, 348
GluI	GCNGC	2 cut(s)	237, 431
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	35, 146, 259
HinfI	GANTC	2 cut(s)	63, 104
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	163, 486
Hpy188III	TCNNGA	5 cut(s)	184, 256, 309, 329, 440
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	261, 569
HpyCH4III	ACNGT	2 cut(s)	199, 625
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	2 cut(s)	31, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	35, 146, 259
Kzo9I	GATC	2 cut(s)	270, 325
LpnPI	CCDG	4 cut(s)	246, 267, 613, 700
Lsp1109I	GCAGC	2 cut(s)	223, 442
MaeI	CTAG	3 cut(s)	8, 69, 348
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	4 cut(s)	10, 208, 625, 707
MalI	GATC	2 cut(s)	272, 327
MboI	GATC	2 cut(s)	270, 325
MboII	GAAGA	4 cut(s)	344, 455, 458, 731
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	61, 699
MluCI	AATT	6 cut(s)	84, 304, 340, 564, 574, 645
MmeI	TCCRAC	2 cut(s)	97, 649
MnlI	CCTC	8 cut(s)	25, 50, 106, 121, 157, 191, 385, 503
MseI	TTAA	3 cut(s)	135, 303, 321
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	2 cut(s)	270, 325
NlaIII	CATG	3 cut(s)	35, 146, 259
NmuCI	GTSAC	2 cut(s)	10, 208
NspI	RCATGY	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	73
PagI	TCATGA	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	63, 104
Pfl23II	CGTACG	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	238, 432
PshBI	ATTAAT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	2 cut(s)	61, 699
PspLI	CGTACG	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	352, 506
RsaNI	GTAC	2 cut(s)	351, 505
SacI	GAGCTC	2 cut(s)	61, 699
SaqAI	TTAA	3 cut(s)	135, 303, 321
SatI	GCNGC	2 cut(s)	237, 431
Sau3AI	GATC	2 cut(s)	270, 325
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	352
SduI	GDGCHC	2 cut(s)	61, 699
Sfr274I	CTCGAG	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	73
SmlI	CTYRAG	3 cut(s)	73, 184, 276
SmoI	CTYRAG	3 cut(s)	73, 184, 276
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	6 cut(s)	84, 304, 340, 564, 574, 645
SspMI	CTAG	3 cut(s)	8, 69, 348
SstI	GAGCTC	2 cut(s)	61, 699
TaaI	ACNGT	2 cut(s)	199, 625
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	8 cut(s)	42, 55, 61, 74, 126, 330, 344, 693
TasI	AATT	6 cut(s)	84, 304, 340, 564, 574, 645
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	63, 104
Tru1I	TTAA	3 cut(s)	135, 303, 321
Tru9I	TTAA	3 cut(s)	135, 303, 321
TseFI	GTSAC	2 cut(s)	10, 208
TseI	GCWGC	2 cut(s)	236, 430
Tsp45I	GTSAC	2 cut(s)	10, 208
TspDTI	ATGAA	3 cut(s)	96, 131, 272
TspGWI	ACGGA	2 cut(s)	112, 522
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	84
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	3 cut(s)	8, 69, 348
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.