Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000292.1

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

101822 .. 113241

Gene Structure 11420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000292.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3915 bp

atgaggtatgatgacagactgactagaactctaactgaatcatttcgatgtgaatcgatccaaacaaacatcacagatcgatcaaggaggctcctacgaactcgaccaagaaaacttgaagccgtgacgtcgccggagcaaggatttcctgtcgggtccgaatacctgaatctatgcagccttgcagcgccgccgtgggggagaatcgccgttagaggccaccacagggaggagcagaacaaggagtcgagtcgatttgaaaagtatcaccgttggagatcgccggagggcgctggaaaagttgggttggattggccggatccaggtcggctgggtatagttactcttcccactacccaacacggctctgtggaagaagaagaagatgaggaggaggagggttttcttcgcgacaaacttggagaagctgaggaagccacgaagccggaatccggtcacagtccggcagtcggatttgggattctggtgactggttgtaggattccggtgaccggtcgccggagacagcggcctgccactagtcactggagcacaacaagtataggtaacactgcagaatcaaataagtccgaaggggttgaaactgtgaaaaccccttattcaaatgctggatttttcagcatcctcactttttcttggatgagtcctttaatcgctgttggcaataagaaaacattaaaccttgaagatgttcctggactagacaagggtgatagtgtagttgggtcccttccaatttttagaaaaaagctggagtcagagtgtggtactcttagcagagttaccacacttcatctggtaaaggcattaatcttctcggcctggagagagattctttggacagctttgtttgcactgctgtccacagtggctacttatgttggcccatatctaatcgacacctttgtgcaatacctcaatgggcgacgtgagttcagaaatcagggctatgctttagtttctgcatttttgggggcgaaggttgtggaatgcctctgtgacaggcactggatcttcagggggcagcagataggagttagaatgagagctttactggttgccatgatctataataagggtttgagcctgtcttgccagtccaagcagtgccacactagtggtgagattatcaattttatgactgttgatgctgagagggttggtgaattcacttggtacatgcatgaaccatggaccatcattctacaagttgctttggccctctttattttgtataaaaatcttggtcttggtgcaattgcaactttagttgcaactgtaatggttatgttggcaaatgttcctctccgaaaattgcaagagaagtttcaaaggaaactaatggagtcaaaggatggaaggatgaaggcgacatctgagattttaaggaacatgcggattctcaagcttcaagcatgggagatgaagtttttgtctaaaattattgacctcaggaagattgagacagaatggttacaaaagtttgtttgcacttcggccatgacctcatttgtcttctgggctgcccctacatttgtgtctgtggtcacctttgttgcttgcgtgctttttttcgagatccctctggaatcggggaagatcttatctgtgcttgcaactttcagaattcttcaagagcccatctactctcttccacaaacaatatcaatgatagcacagacaaaggtatcccttgaaagaatttcatcattcctttatcttgatgagttgaagcctgatgctatagagaaccttcctagaggtagttctcatactgcaattgagatagtagatgcaaatttctcttgggatatatcttcacctaacccaacattgaaggatataaatctcaaaattagccatggtatgagggttgctgtttgtggtactgttggctcaggcaagtcaaccttactttcttgtattctgggagaagtgcccaagatatctggtcttcttaagttgtgtgggacaaaggcctatgtttctcagtcaccatggatacagagtggcaagatagaagaaaacatattgtttggtaaattgatggacagagaaaggtatgagggggttctcgaagcatgttcgttgaagaaggacctggaaattctaccatttggtgaccagaccattataggggagaggggaatcaatttaagtggagggcagaagcaaagaatacaaattgcgcgagctctgtaccaagatgctgatatctatctgtttgatgatccttttagtgctgttgatgctcatacaggatcccaccttttcaaggaatgtttgatggccctcttgagttccaaaacagtaatctatgtcactcatcaagtggagttcttacctgctgctgatattatcttggtcatgaacgatggaaggatcacccaagctggaaagttcaatgacattatcaattcaggaactgattttaaagatcttgtgggagcacacaatgaagctttgtctgcgcttgatgctgttggggtagggccaggtgaaaaaacaagcatcagcgaggaggataacaattcgactagtactaatggggctgtcaaagaagtagacaacaacgatgttgaggattgtaaaatagatgatttaggtgtgccaaaagggcagcttgttcaagaagaagagagagagaaaggtaaggttgggttcttagtgtactggaaatacattaccacagcgtacagaggtgcttttgtgccttttatattgcttgcacatactctttttcaactccttcaaattggaagcaattactggatggcttgggcggctcctgtgtcagcagacgtgaaacctcctgttacaagctctatgcttataattgtctatgtggctttggctgttggaagttctttttgtgtcctgctcagaactctgcttcttgtaacggcagggtacaagacagccactatactcttccataaaatgcacttgtgcattttccgtgctcccatgtcattctttgatgccactccaagtggaagaattttaaacagagcttctacagaccaaaatgcattggatatgaacatatcaaatcaagttgcctcctttgcctactcaatgatatggcttttaggatatattgtagtgatgtctcaggtggcatggcaggtttccatcatatttatacctgtgattacagcctgtgtttggtatcaggtgcggtatgctccacacttgccacttgtgttgcggggtctcacatgtacctttcctggaggaattaaaactgggattgtggggagaactggcagtggaaagtcaactcttatacaaactcttttccgaatagttgatcctgatgttggccggattttgatagatggcgtcgatatctcttctattggattgcatgatctgcggtctaatctaagcattatccctcaggacccaaccatgtttgagggaactgtaagaagcaatctagacccacttgaagagtacaaagatgaacaaatttgggaggccttggataagtgccaacttggagatgaagttaggaagaaagaagggaagctggattctgcagttagtgaaaatggagagaactggagtatgggtcagaggcagctcgtttgcctgggccgtgtgctcctcaagaaaagtaaggtcctggtgcttgatgaagctacttcatctgttgatactgctacagataatctgattcagcagacccttcggcatcacttctcagactgtaccgtcattactattgcgcaccgaatatcttctgttcttgacagtgacatggttcttcttctaagtaatgggctccttgaggaatgtgattctcctgcaagattgctagaaaacaagttatcagcttttgcccaacttgtagaggagtacacaacgagatcgaattccactctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1304

Amino Acids

145.05

Weight (kDa)

6.37

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2855
AasI	GACNNNNNNGTC	1 cut(s)	3740
AatII	GACGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	3756
Acc36I	ACCTGC	2 cut(s)	2374, 3139
AccI	GTMKAC	1 cut(s)	2586
AccII	CGCG	2 cut(s)	411, 2212
AciI	CCGC	7 cut(s)	191, 529, 1417, 2804, 3202, 3232, 3400
AcoI	YGGCCR	3 cut(s)	314, 1518, 3346
AcsI	RAATTY	8 cut(s)	1187, 1647, 1722, 1819, 2127, 3021, 3495, 3901
AcuI	CTGAAG	1 cut(s)	1021
AcyI	GRCGYC	2 cut(s)	128, 3366
AflII	CTTAAG	1 cut(s)	1979
AflIII	ACRYGT	1 cut(s)	3242
AgeI	ACCGGT	1 cut(s)	512
AhlI	ACTAGT	3 cut(s)	539, 1136, 2558
AjiI	CACGTC	2 cut(s)	950, 2824
AjnI	CCWGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
AleI	CACNNNNGTG	2 cut(s)	926, 1137
Alw21I	GWGCWC	5 cut(s)	554, 2218, 2473, 2986, 3633
Alw26I	GTCTC	4 cut(s)	517, 1478, 3138, 3242
AlwNI	CAGNNNCTG	2 cut(s)	1029, 2447
ApeKI	GCWGC	7 cut(s)	177, 185, 1045, 1544, 2369, 2641, 3607
ApoI	RAATTY	8 cut(s)	1187, 1647, 1722, 1819, 2127, 3021, 3495, 3901
AseI	ATTAAT	1 cut(s)	830
AsiGI	ACCGGT	1 cut(s)	512
Asp700I	GAANNNNTTC	3 cut(s)	42, 711, 3766
AspLEI	GCGC	5 cut(s)	190, 293, 2212, 2494, 3757
AvaII	GGWCC	6 cut(s)	156, 747, 1215, 2119, 3427, 3649
AxyI	CCTNAGG	2 cut(s)	1472, 3423
BaeGI	GKGCMC	1 cut(s)	1962
BaeI	ACNNNNGTAYC	2 cut(s)	1692, 1725
BamHI	GGATCC	2 cut(s)	319, 2282
BanII	GRGCYC	3 cut(s)	1662, 2218, 3813
BbsI	GAAGAC	2 cut(s)	1528, 1967
Bbv12I	GWGCWC	5 cut(s)	554, 2218, 2473, 2986, 3633
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	7 cut(s)	189, 197, 1057, 1531, 2356, 2653, 3619
BccI	CCATC	9 cut(s)	1226, 1370, 1670, 2062, 2302, 2390, 2788, 3164, 3356
BceAI	ACGGC	6 cut(s)	107, 178, 194, 379, 2940, 3609
BcgI	CGANNNNNNTGC	2 cut(s)	3698, 3732
BciT130I	CCWGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
BciVI	GTATCC	2 cut(s)	1720, 2016
BcoDI	GTCTC	4 cut(s)	517, 1478, 3138, 3242
BcuI	ACTAGT	3 cut(s)	539, 1136, 2558
BfaI	CTAG	8 cut(s)	24, 540, 722, 1137, 1779, 2559, 3464, 3845
BfmI	CTRYAG	5 cut(s)	573, 1764, 3039, 3564, 3690
BfoI	RGCGCY	2 cut(s)	191, 294
BfrI	CTTAAG	1 cut(s)	1979
BfuAI	ACCTGC	2 cut(s)	2374, 3139
BfuI	GTATCC	2 cut(s)	1720, 2016
BglI	GCCNNNNNGGC	1 cut(s)	2638
BglII	AGATCT	2 cut(s)	1620, 2458
BmcAI	AGTACT	1 cut(s)	2563
Bme1390I	CCNGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
Bme18I	GGWCC	6 cut(s)	156, 747, 1215, 2119, 3427, 3649
BmgBI	CACGTC	2 cut(s)	950, 2824
BmiI	GGNNCC	9 cut(s)	92, 157, 321, 748, 749, 2284, 2808, 3429, 3812
BmrFI	CCNGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
BmrI	ACTGGG	1 cut(s)	3279
BmuI	ACTGGG	1 cut(s)	3279
BpiI	GAAGAC	2 cut(s)	1528, 1967
BpmI	CTGGAG	5 cut(s)	568, 794, 865, 3276, 3610
Bpu10I	CCTNAGC	2 cut(s)	429, 1918
BpuEI	CTTGAG	4 cut(s)	1409, 2338, 3620, 3836
Bsa29I	ATCGAT	2 cut(s)	56, 79
BsaBI	GATNNNNATC	3 cut(s)	52, 1866, 2238
BsaHI	GRCGYC	2 cut(s)	128, 3366
BsaI	GGTCTC	1 cut(s)	3242
BsaJI	CCNNGG	6 cut(s)	194, 1211, 1882, 2018, 3507, 3619
BsaWI	WCCGGW	3 cut(s)	452, 505, 512
BsaXI	ACNNNNNCTCC	8 cut(s)	767, 797, 1433, 1463, 3519, 3549, 3583, 3613
Bse118I	RCCGGY	1 cut(s)	512
Bse21I	CCTNAGG	2 cut(s)	1472, 3423
Bse8I	GATNNNNATC	3 cut(s)	52, 1866, 2238
BseBI	CCWGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
BseCI	ATCGAT	2 cut(s)	56, 79
BseDI	CCNNGG	6 cut(s)	194, 1211, 1882, 2018, 3507, 3619
BseGI	GGATG	5 cut(s)	642, 666, 1381, 1389, 2799
BseJI	GATNNNNATC	3 cut(s)	52, 1866, 2238
BseRI	GAGGAG	7 cut(s)	245, 404, 407, 410, 2555, 3623, 3896
BseSI	GKGCMC	1 cut(s)	1962
BseXI	GCAGC	7 cut(s)	189, 197, 1057, 1531, 2356, 2653, 3619
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	411, 2212
Bsh1285I	CGRYCG	1 cut(s)	517
BshTI	ACCGGT	1 cut(s)	512
BshVI	ATCGAT	2 cut(s)	56, 79
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	5 cut(s)	554, 2218, 2473, 2986, 3633
BslFI	GGGAC	2 cut(s)	733, 2005
BsmAI	GTCTC	4 cut(s)	517, 1478, 3138, 3242
BsmFI	GGGAC	2 cut(s)	733, 2005
BsmI	GAATGC	1 cut(s)	1016
Bso31I	GGTCTC	1 cut(s)	3242
Bsp1286I	GDGCHC	8 cut(s)	554, 1662, 1962, 2218, 2473, 2986, 3633, 3813
Bsp19I	CCATGG	3 cut(s)	1211, 1882, 2018
Bsp68I	TCGCGA	1 cut(s)	411
BspACI	CCGC	7 cut(s)	191, 529, 1417, 2804, 3202, 3232, 3400
BspDI	ATCGAT	2 cut(s)	56, 79
BspFNI	CGCG	2 cut(s)	411, 2212
BspHI	TCATGA	1 cut(s)	2388
BspLI	GGNNCC	9 cut(s)	92, 157, 321, 748, 749, 2284, 2808, 3429, 3812
BspMAI	CTGCAG	2 cut(s)	577, 3568
BspMI	ACCTGC	2 cut(s)	2374, 3139
BspTI	CTTAAG	1 cut(s)	1979
BspTNI	GGTCTC	1 cut(s)	3242
BsrFI	RCCGGY	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	6 cut(s)	194, 1211, 1882, 2018, 3507, 3619
BssNI	GRCGYC	2 cut(s)	128, 3366
BssT1I	CCWWGG	4 cut(s)	1211, 1882, 2018, 3507
Bst2UI	CCWGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
Bst6I	CTCTTC	6 cut(s)	351, 1677, 2652, 2957, 3382, 3471
BstACI	GRCGYC	2 cut(s)	128, 3366
BstAFI	CTTAAG	1 cut(s)	1979
BstAPI	GCANNNNNTGC	1 cut(s)	3397
BstC8I	GCNNGC	6 cut(s)	534, 1582, 1586, 1635, 2214, 2748
BstDSI	CCRYGG	4 cut(s)	194, 1211, 1882, 2018
BstEII	GGTNACC	3 cut(s)	508, 1567, 2141
BstENI	CCTNNNNNAGG	1 cut(s)	2294
BstF5I	GGATG	5 cut(s)	642, 666, 1381, 1389, 2799
BstFNI	CGCG	2 cut(s)	411, 2212
BstH2I	RGCGCY	2 cut(s)	191, 294
BstHHI	GCGC	5 cut(s)	190, 293, 2212, 2494, 3757
BstMAI	GTCTC	4 cut(s)	517, 1478, 3138, 3242
BstMCI	CGRYCG	1 cut(s)	517
BstNI	CCWGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
BstNSI	RCATGY	4 cut(s)	1204, 1417, 2106, 3246
BstPI	GGTNACC	3 cut(s)	508, 1567, 2141
BstSCI	CCNGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
BstSFI	CTRYAG	5 cut(s)	573, 1764, 3039, 3564, 3690
BstSLI	GKGCMC	1 cut(s)	1962
BstUI	CGCG	2 cut(s)	411, 2212
BstV1I	GCAGC	7 cut(s)	189, 197, 1057, 1531, 2356, 2653, 3619
BstV2I	GAAGAC	2 cut(s)	1528, 1967
BstX2I	RGATCY	6 cut(s)	319, 1032, 1599, 1620, 2282, 2458
BstXI	CCANNNNNNTGG	1 cut(s)	1139
BstYI	RGATCY	6 cut(s)	319, 1032, 1599, 1620, 2282, 2458
Bsu15I	ATCGAT	2 cut(s)	56, 79
Bsu36I	CCTNAGG	2 cut(s)	1472, 3423
BsuI	GTATCC	2 cut(s)	1720, 2016
BsuTUI	ATCGAT	2 cut(s)	56, 79
BtgI	CCRYGG	4 cut(s)	194, 1211, 1882, 2018
BtrI	CACGTC	2 cut(s)	950, 2824
BtsCI	GGATG	5 cut(s)	642, 666, 1381, 1389, 2799
BtsI	GCAGTG	4 cut(s)	570, 875, 1133, 3298
BtsIMutI	CAGTG	8 cut(s)	544, 570, 875, 894, 1027, 1133, 3298, 3787
BtuMI	TCGCGA	1 cut(s)	411
BveI	ACCTGC	2 cut(s)	2374, 3139
Cac8I	GCNNGC	6 cut(s)	534, 1582, 1586, 1635, 2214, 2748
CaiI	CAGNNNCTG	2 cut(s)	1029, 2447
CciI	TCATGA	1 cut(s)	2388
CfoI	GCGC	5 cut(s)	190, 293, 2212, 2494, 3757
Cfr10I	RCCGGY	1 cut(s)	512
ClaI	ATCGAT	2 cut(s)	56, 79
CseI	GACGC	1 cut(s)	3355
CspAI	ACCGGT	1 cut(s)	512
CspCI	CAANNNNNGTGG	4 cut(s)	2161, 2196, 3210, 3245
DraI	TTTAAA	2 cut(s)	2455, 3027
DrdI	GACNNNNNNGTC	1 cut(s)	3740
DseDI	GACNNNNNNGTC	1 cut(s)	3740
EaeI	YGGCCR	3 cut(s)	314, 1518, 3346
Eam1104I	CTCTTC	6 cut(s)	351, 1677, 2652, 2957, 3382, 3471
EarI	CTCTTC	6 cut(s)	351, 1677, 2652, 2957, 3382, 3471
Ecl136II	GAGCTC	1 cut(s)	2216
Eco130I	CCWWGG	4 cut(s)	1211, 1882, 2018, 3507
Eco147I	AGGCCT	2 cut(s)	2000, 3506
Eco24I	GRGCYC	3 cut(s)	1662, 2218, 3813
Eco31I	GGTCTC	1 cut(s)	3242
Eco32I	GATATC	3 cut(s)	1968, 2236, 3373
Eco47I	GGWCC	6 cut(s)	156, 747, 1215, 2119, 3427, 3649
Eco53kI	GAGCTC	1 cut(s)	2216
Eco57I	CTGAAG	1 cut(s)	1021
Eco81I	CCTNAGG	2 cut(s)	1472, 3423
Eco91I	GGTNACC	3 cut(s)	508, 1567, 2141
EcoICRI	GAGCTC	1 cut(s)	2216
EcoNI	CCTNNNNNAGG	1 cut(s)	2294
EcoO109I	RGGNCCY	4 cut(s)	747, 2119, 3427, 3649
EcoO65I	GGTNACC	3 cut(s)	508, 1567, 2141
EcoRI	GAATTC	3 cut(s)	1187, 1647, 3901
EcoRII	CCWGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
EcoRV	GATATC	3 cut(s)	1968, 2236, 3373
EcoT14I	CCWWGG	4 cut(s)	1211, 1882, 2018, 3507
EcoT22I	ATGCAT	2 cut(s)	1206, 3055
EcoT38I	GRGCYC	3 cut(s)	1662, 2218, 3813
ErhI	CCWWGG	4 cut(s)	1211, 1882, 2018, 3507
FalI	AAGNNNNNCTT	4 cut(s)	1916, 1948, 2628, 2660
FaqI	GGGAC	2 cut(s)	733, 2005
FauI	CCCGC	1 cut(s)	3225
FblI	GTMKAC	1 cut(s)	2586
FokI	GGATG	5 cut(s)	629, 673, 1388, 1396, 2806
FriOI	GRGCYC	3 cut(s)	1662, 2218, 3813
FspBI	CTAG	8 cut(s)	24, 540, 722, 1137, 1779, 2559, 3464, 3845
FspI	TGCGCA	1 cut(s)	3756
GlaI	GCGC	5 cut(s)	189, 292, 2211, 2493, 3756
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	5 cut(s)	568, 794, 865, 3276, 3610
HaeII	RGCGCY	2 cut(s)	191, 294
HgaI	GACGC	1 cut(s)	3355
HhaI	GCGC	5 cut(s)	190, 293, 2212, 2494, 3757
Hin1I	GRCGYC	2 cut(s)	128, 3366
Hin6I	GCGC	5 cut(s)	188, 291, 2210, 2492, 3755
HinP1I	GCGC	5 cut(s)	188, 291, 2210, 2492, 3755
HincII	GTYRAC	2 cut(s)	1929, 3303
HindII	GTYRAC	2 cut(s)	1929, 3303
HindIII	AAGCTT	2 cut(s)	1427, 2481
Hpy166II	GTNNAC	6 cut(s)	885, 1929, 2587, 2692, 3303, 3888
Hpy8I	GTNNAC	6 cut(s)	885, 1929, 2587, 2692, 3303, 3888
Hpy99I	CGWCG	3 cut(s)	133, 951, 3371
HpyCH4IV	ACGT	3 cut(s)	128, 949, 2823
HpySE526I	ACGT	3 cut(s)	128, 949, 2823
Hsp92I	GRCGYC	2 cut(s)	128, 3366
HspAI	GCGC	5 cut(s)	188, 291, 2210, 2492, 3755
KflI	GGGWCCC	1 cut(s)	747
Lsp1109I	GCAGC	7 cut(s)	189, 197, 1057, 1531, 2356, 2653, 3619
MaeI	CTAG	8 cut(s)	24, 540, 722, 1137, 1779, 2559, 3464, 3845
MaeII	ACGT	3 cut(s)	128, 949, 2823
MfeI	CAATTG	2 cut(s)	1278, 1800
MflI	RGATCY	6 cut(s)	319, 1032, 1599, 1620, 2282, 2458
MhlI	GDGCHC	8 cut(s)	554, 1662, 1962, 2218, 2473, 2986, 3633, 3813
MlyI	GAGTC	5 cut(s)	254, 259, 673, 785, 1376
MmeI	TCCRAC	4 cut(s)	254, 288, 451, 2860
Mph1103I	ATGCAT	2 cut(s)	1206, 3055
MroXI	GAANNNNTTC	3 cut(s)	42, 711, 3766
MseI	TTAA	9 cut(s)	671, 698, 830, 1406, 1980, 2177, 2454, 3026, 3264
MslI	CAYNNNNRTG	3 cut(s)	46, 926, 1137
MspA1I	CMGCKG	1 cut(s)	529
MspCI	CTTAAG	1 cut(s)	1979
MspR9I	CCNGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
MunI	CAATTG	2 cut(s)	1278, 1800
Mva1269I	GAATGC	1 cut(s)	1016
MvaI	CCWGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
MvnI	CGCG	2 cut(s)	411, 2212
NcoI	CCATGG	3 cut(s)	1211, 1882, 2018
NlaIV	GGNNCC	9 cut(s)	92, 157, 321, 748, 749, 2284, 2808, 3429, 3812
NmeAIII	GCCGAG	1 cut(s)	818
NruI	TCGCGA	1 cut(s)	411
NsbI	TGCGCA	1 cut(s)	3756
NsiI	ATGCAT	2 cut(s)	1206, 3055
NspI	RCATGY	4 cut(s)	1204, 1417, 2106, 3246
OliI	CACNNNNGTG	2 cut(s)	926, 1137
PagI	TCATGA	1 cut(s)	2388
PceI	AGGCCT	2 cut(s)	2000, 3506
PciI	ACATGT	1 cut(s)	3242
PctI	GAATGC	1 cut(s)	1016
PdmI	GAANNNNTTC	3 cut(s)	42, 711, 3766
PfoI	TCCNGGA	2 cut(s)	715, 3253
PinAI	ACCGGT	1 cut(s)	512
PleI	GAGTC	5 cut(s)	253, 258, 672, 784, 1375
PpsI	GAGTC	5 cut(s)	253, 258, 672, 784, 1375
PpuMI	RGGWCCY	4 cut(s)	747, 2119, 3427, 3649
PscI	ACATGT	1 cut(s)	3242
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	2855
Psp124BI	GAGCTC	1 cut(s)	2218
Psp5II	RGGWCCY	4 cut(s)	747, 2119, 3427, 3649
Psp6I	CCWGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
PspEI	GGTNACC	3 cut(s)	508, 1567, 2141
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
PspN4I	GGNNCC	9 cut(s)	92, 157, 321, 748, 749, 2284, 2808, 3429, 3812
PspPPI	RGGWCCY	4 cut(s)	747, 2119, 3427, 3649
PstI	CTGCAG	2 cut(s)	577, 3568
PstNI	CAGNNNCTG	2 cut(s)	1029, 2447
PsuI	RGATCY	6 cut(s)	319, 1032, 1599, 1620, 2282, 2458
RruI	TCGCGA	1 cut(s)	411
RseI	CAYNNNNRTG	3 cut(s)	46, 926, 1137
SacI	GAGCTC	1 cut(s)	2218
SaqAI	TTAA	9 cut(s)	671, 698, 830, 1406, 1980, 2177, 2454, 3026, 3264
ScaI	AGTACT	1 cut(s)	2563
SchI	GAGTC	5 cut(s)	254, 259, 673, 785, 1376
ScrFI	CCNGG	8 cut(s)	324, 717, 844, 2123, 2517, 3255, 3620, 3653
SduI	GDGCHC	8 cut(s)	554, 1662, 1962, 2218, 2473, 2986, 3633, 3813
SfcI	CTRYAG	5 cut(s)	573, 1764, 3039, 3564, 3690
SinI	GGWCC	6 cut(s)	156, 747, 1215, 2119, 3427, 3649
SmiMI	CAYNNNNRTG	3 cut(s)	46, 926, 1137
SmlI	CTYRAG	5 cut(s)	1424, 1979, 2317, 3635, 3815
SmoI	CTYRAG	5 cut(s)	1424, 1979, 2317, 3635, 3815
SpeI	ACTAGT	3 cut(s)	539, 1136, 2558
SseBI	AGGCCT	2 cut(s)	2000, 3506
SsiI	CCGC	7 cut(s)	191, 529, 1417, 2804, 3202, 3232, 3400
SspMI	CTAG	8 cut(s)	24, 540, 722, 1137, 1779, 2559, 3464, 3845
SstI	GAGCTC	1 cut(s)	2218
StuI	AGGCCT	2 cut(s)	2000, 3506
StyD4I	CCNGG	8 cut(s)	322, 715, 842, 2121, 2515, 3253, 3618, 3651
StyI	CCWWGG	4 cut(s)	1211, 1882, 2018, 3507
TaiI	ACGT	3 cut(s)	131, 952, 2826
TatI	WGTACW	4 cut(s)	2561, 2691, 3480, 3885
TauI	GCSGC	3 cut(s)	193, 532, 2807
Tru1I	TTAA	9 cut(s)	671, 698, 830, 1406, 1980, 2177, 2454, 3026, 3264
Tru9I	TTAA	9 cut(s)	671, 698, 830, 1406, 1980, 2177, 2454, 3026, 3264
TscAI	CASTG	8 cut(s)	551, 577, 882, 894, 1034, 1133, 3298, 3787
TseI	GCWGC	7 cut(s)	177, 185, 1045, 1544, 2369, 2641, 3607
TspGWI	ACGGA	1 cut(s)	2969
TspRI	CASTG	8 cut(s)	551, 577, 882, 894, 1034, 1133, 3298, 3787
Vha464I	CTTAAG	1 cut(s)	1979
VpaK11BI	GGWCC	6 cut(s)	156, 747, 1215, 2119, 3427, 3649
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	2294
XapI	RAATTY	8 cut(s)	1187, 1647, 1722, 1819, 2127, 3021, 3495, 3901
XbaI	TCTAGA	1 cut(s)	3463
XceI	RCATGY	4 cut(s)	1204, 1417, 2106, 3246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmiI	GTMKAC	1 cut(s)	2586
XmnI	GAANNNNTTC	3 cut(s)	42, 711, 3766
XspI	CTAG	8 cut(s)	24, 540, 722, 1137, 1779, 2559, 3464, 3845
ZraI	GACGTC	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	2563
Zsp2I	ATGCAT	2 cut(s)	1206, 3055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.