Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_13

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 4661

Gene Structure 4658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGACCTCATTTGTTTTCTGGGGTGCCCCCACATTTGTGTCAGTGGTCACGTTCGTTGCTTGCATGCTTTTGGGGATCCCACTTGAGTCGGGGAAGATCTTATCTGCACTTGCAACATTCAGGATTCTTCAAGAGCCTATCTACGGTCTTCCAGACTTAATTTCAATGATAGCACAAACTAAGGTATCCCTTGATAGAATTGCATCATTCCTTAGTCTTGATGACTTGCCTCCTGACGTTATAGAGAACCTTCCAAGAGGTAGTTCTGATACAGCAATTGAGATAGTCGATGGGAATTTCTCTTGGGATTTATCATCCCCTAGTCCAACATTGAAGGATCTAAATTTCAAAGTGAGCCAAGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGCTCAGGCAAGTCTAGCTTACTTTCTTGTATTCTGGGAGAAGTTCCGAAGATATCGGGGACTCTTAAAATGTGTGGGACAAAGGCCTATGTTTCTCAGTCACCGTGGATACAGAGTGGCAAGATAGAGGAAAACATATTGTTTGGTCAAGAGATGGACAGAGAAAGATATGAGAGGGTGCTTGAAGCATGTTCATTAAAGAAGGACCTGGAAATTCTATCGTTTGGTGATCAGACAATTATAGGGGAGAGGGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAATACAAATTGCACGTGCTCTGTATCAAGACGCTGATATTTATCTGTTTGATGATCCTTTTAGCGCTGTTGATGCTCATACAGGATCACACCTTTTTAAGGAATGCTTGCTGGGTCTCTTGGGTTCAAAAACAGTAATCTTTGTTACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTCATCTTGGTCATGAAAGACGGAAGGATTACTCAAGCAGGAAAGTTCAATGACATTCTTAATTCAGAAACTGATTTTATGGAACTTGTGGGAGCACACGCGGAAGCTTTGTCCGTGCTTAATTCTGCAGAGGTGGAGCCAGTAGAAAAAATAAGCGTTAGCAAAGAAGATGGAGAATTTGCTAGTACTAGTGGGGTTGTCCAAAACGTAGAAGACACTGATGTTCAAAATTCTAAAACAGATGATTTACCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAGAGTTGGGTTGTCAGTCTACTGGAAGTACATCACCACAGCATACGGAGGTGCTCTTGTTCCGTTTATCTTGCTTGCACAGGTTCTCTTTCAGGTCCTTCAAATTGGAAGCAATTACTGGATGGCTTGGGCAACTCCTGTTTCAGAGGATGTGAAACCTGCTGTTGAAACCTCTACACTTCTAACTGTTTATGTTGCTTTGGCCGTTGGAAGTTCTTTTTGTATCCTCTTCAGATCCATGTTTCTTGCAACAGCTGGGTACAGGACAGCCACTCTACTCTTTAGTAAAATGCATTCATGCGTTTTCCGTGCTCCCATGTCTTTCTTTGATGCCACTCCAAGTGGACGAATCCTAAACAGAGCTTCTACAGACCAAAATGTAGTGGACTTGAACATGCCGGGTCAAATTGGGGCCCTTGCCAACTCATTGATCCAGCTTCTGGGAATTATTGCAGTGATCTCGCAAGTTGCTTGGCAGGTTTTCATCATTTTTATCCCTGTGATTGCAATCTGTATCTGGTTACAGCAATACTACATACCTTCAGCACGAGAACTGGCACGGTTGGTTGGGGTATGCAAAGCTCCAGTGATACAACACTTTGCTGAAACAATTTCAGGTTCGACAACTATTAGGAGCTTCAATCAAGAATCAAGATTTAGGGATACAAACATGAAACTGATGGATGGTTATGGTCGGCCTAATTTTCATACTGTGGCTGCAAGGGAGTGGCTATGTTTTCGCTTGGATATGTTGTCATCTATAACTTTTGGATTCTGTTTGGTTTTCTTGATCTCTATTCCAGCAGGGGTGATTGATCCAGGTGTTGCGGGCTTAACTGTCACATATGGACTTAATCTAAACACGTTACTGGCGTGGTTTATATGGAATCTTTGCAATGTAGAGAACAGAATTATATCAGTGGAGAGATTACTACAGTACACTACCATTCCCAGTGAGCCTCCTCTTGTAATAGAATCCAATCAGCCAGATCGTTCTTGGCCATTACGTGGAAAAGTTGACATACATGATCTTCAGGTCCGTTATGCCCCACACATGCCGCTTGTGTTGCGAGGTATCACATGTACCTTTCCTGGAGGAATGAAAACTGGGATTGTGGGTAGAACTGGCAGTGGCAAATCGACTCTCATACAGACCCTTTTCCGAATTGTGGATCCTGCTTCTGGCCAGATTTTGATAGATGGTATTGATATATCTTCAATTGGACTGCATGATCTAAGGTCTAGGCTGAGCATTATCCCTCAGGACCCAACCATGTTTGAAGGGACTGTAAGAAGCAATCTGGACCCACTTGAAGAGTACACAGATGAGCAAATTTGGGAGGCCCTGGATAAGTGTCAACTTGGAGATGAAGTTAGGAGAAAGGACGGAAAGCTGGATGCCACAGTTAGTGAGAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGTTGGTCTGCCTTGGCCGTGTGCTGCTCAAGAAAAGTAAGGTCTTGGTGCTTGACGAAGCTACCGCGTCGGTCGATACAGCTACAGATAATCTCATCCAGCAGACCCTTCGCCAACACTTTACTGACTGTACAGTCATCACTATTGCACATCGTATAACTTCTGTTCTTGATAGTGACATGGTTCTGCTTCTGAGTCATGGTCTTATTGACGAATATGATTCTCCTGCAACCTTGCTCGAGAACAAGTCGTCATCTTTTGCTCAGCTTGTGGCAGAGTACACAATGAGGTCGAATTCCAGTTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

966

Amino Acids

106.27

Weight (kDa)

5.06

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2720
Acc36I	ACCTGC	3 cut(s)	850, 1309, 1609
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	2 cut(s)	1582, 2150
AccI	GTMKAC	1 cut(s)	1161
AccII	CGCG	2 cut(s)	953, 2654
AciI	CCGC	4 cut(s)	953, 1970, 2201, 2652
AcoI	YGGCCR	4 cut(s)	1344, 2141, 2326, 2602
AcsI	RAATTY	7 cut(s)	295, 343, 603, 1028, 1081, 2475, 2881
AcuI	CTGAAG	3 cut(s)	1357, 1668, 2159
AcvI	CACGTG	1 cut(s)	689
AfaI	GTAC	9 cut(s)	385, 1039, 1172, 1403, 2081, 2227, 2462, 2719, 2867
AfeI	AGCGCT	1 cut(s)	739
AfiI	CCNNNNNNNGG	7 cut(s)	143, 772, 859, 1582, 2150, 2311, 2324
AflIII	ACRYGT	2 cut(s)	2004, 2222
AhlI	ACTAGT	1 cut(s)	1040
AjnI	CCWGG	4 cut(s)	597, 1960, 2233, 2487
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AleI	CACNNNNGTG	1 cut(s)	35
Alw21I	GWGCWC	4 cut(s)	694, 949, 1198, 1456
Alw26I	GTCTC	1 cut(s)	794
AlwNI	CAGNNNCTG	2 cut(s)	923, 1582
Ama87I	CYCGRG	1 cut(s)	2825
Aor51HI	AGCGCT	1 cut(s)	739
AoxI	GGCC	8 cut(s)	474, 1344, 1554, 1838, 2141, 2326, 2484, 2602
ApaI	GGGCCC	1 cut(s)	1558
ApeKI	GCWGC	4 cut(s)	845, 1111, 1859, 2611
ApoI	RAATTY	7 cut(s)	295, 343, 603, 1028, 1081, 2475, 2881
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	8 cut(s)	595, 1237, 1554, 1555, 2179, 2407, 2446, 2485
AsuC2I	CCSGG	1 cut(s)	1542
AsuHPI	GGTGA	4 cut(s)	483, 629, 1168, 1963
AvaI	CYCGRG	1 cut(s)	2825
AvaII	GGWCC	5 cut(s)	595, 1237, 2179, 2407, 2446
AxyI	CCTNAGG	1 cut(s)	2403
BaeGI	GKGCMC	2 cut(s)	28, 1558
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BalI	TGGCCA	2 cut(s)	2143, 2328
BamHI	GGATCC	2 cut(s)	75, 2314
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	1558
BauI	CACGAG	1 cut(s)	1689
BbrPI	CACGTG	1 cut(s)	689
BbsI	GAAGAC	2 cut(s)	140, 1071
Bbv12I	GWGCWC	4 cut(s)	694, 949, 1198, 1456
BbvI	GCAGC	4 cut(s)	832, 1123, 1846, 2598
BccI	CCATC	7 cut(s)	284, 538, 1016, 1258, 1816, 1820, 2336
BceAI	ACGGC	2 cut(s)	1331, 2589
BcgI	CGANNNNNNTGC	4 cut(s)	1584, 1618, 2678, 2712
BciT130I	CCWGG	4 cut(s)	599, 1962, 2235, 2489
BciVI	GTATCC	4 cut(s)	196, 492, 1376, 1798
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	1542
BcoDI	GTCTC	1 cut(s)	794
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	5 cut(s)	321, 405, 1035, 1041, 2385
BfmI	CTRYAG	4 cut(s)	978, 1509, 2075, 2670
BfoI	RGCGCY	1 cut(s)	741
BfuAI	ACCTGC	3 cut(s)	850, 1309, 1609
BfuI	GTATCC	4 cut(s)	196, 492, 1376, 1798
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	5 cut(s)	846, 1112, 1860, 2201, 2612
BlpI	GCTNAGC	2 cut(s)	2390, 2850
BlsI	GCNGC	5 cut(s)	847, 1113, 1861, 2202, 2613
BmcAI	AGTACT	1 cut(s)	1039
Bme1390I	CCNGG	5 cut(s)	599, 1542, 1962, 2235, 2489
Bme18I	GGWCC	5 cut(s)	595, 1237, 2179, 2407, 2446
BmeT110I	CYCGRG	1 cut(s)	2825
BmgT120I	GGNCC	8 cut(s)	595, 1237, 1554, 1555, 2179, 2407, 2446, 2485
BmiI	GGNNCC	8 cut(s)	25, 77, 990, 1555, 1556, 2316, 2409, 2448
BmrFI	CCNGG	5 cut(s)	599, 1542, 1962, 2235, 2489
BmrI	ACTGGG	2 cut(s)	2088, 2259
BmsI	GCATC	4 cut(s)	212, 736, 1462, 2530
BmuI	ACTGGG	2 cut(s)	2088, 2259
BpiI	GAAGAC	2 cut(s)	140, 1071
BpmI	CTGGAG	3 cut(s)	1710, 2256, 2590
Bpu10I	CCTNAGC	1 cut(s)	394
Bpu1102I	GCTNAGC	2 cut(s)	2390, 2850
BpuEI	CTTGAG	3 cut(s)	104, 870, 2600
BpuMI	CCSGG	1 cut(s)	1542
BsaAI	YACGTR	2 cut(s)	689, 2150
BsaBI	GATNNNNATC	2 cut(s)	714, 1649
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	358, 494, 2487, 2599
BsaXI	ACNNNNNCTCC	4 cut(s)	2499, 2529, 2563, 2593
Bsc4I	CCNNNNNNNGG	7 cut(s)	143, 772, 859, 1582, 2150, 2311, 2324
Bse21I	CCTNAGG	1 cut(s)	2403
Bse3DI	GCAATG	1 cut(s)	2044
Bse8I	GATNNNNATC	2 cut(s)	714, 1649
BseBI	CCWGG	4 cut(s)	599, 1962, 2235, 2489
BseDI	CCNNGG	4 cut(s)	358, 494, 2487, 2599
BseGI	GGATG	6 cut(s)	314, 1269, 1297, 1831, 2545, 2682
BseJI	GATNNNNATC	2 cut(s)	714, 1649
BseLI	CCNNNNNNNGG	7 cut(s)	143, 772, 859, 1582, 2150, 2311, 2324
BseMI	GCAATG	1 cut(s)	2044
BseMII	CTCAG	6 cut(s)	408, 500, 2381, 2417, 2771, 2864
BseRI	GAGGAG	1 cut(s)	2094
BseSI	GKGCMC	2 cut(s)	28, 1558
BseXI	GCAGC	4 cut(s)	832, 1123, 1846, 2598
BseYI	CCCAGC	2 cut(s)	784, 1397
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	2 cut(s)	953, 2654
Bsh1285I	CGRYCG	1 cut(s)	2661
BshFI	GGCC	8 cut(s)	476, 1346, 1556, 1840, 2143, 2328, 2486, 2604
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	2661
BsiHKAI	GWGCWC	4 cut(s)	694, 949, 1198, 1456
BsiHKCI	CYCGRG	1 cut(s)	2825
BsiSI	CCGG	1 cut(s)	1541
BslFI	GGGAC	3 cut(s)	463, 481, 2440
BslI	CCNNNNNNNGG	7 cut(s)	143, 772, 859, 1582, 2150, 2311, 2324
BsmAI	GTCTC	1 cut(s)	794
BsmFI	GGGAC	3 cut(s)	463, 481, 2440
BsmI	GAATGC	2 cut(s)	782, 1435
BsnI	GGCC	8 cut(s)	476, 1346, 1556, 1840, 2143, 2328, 2486, 2604
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	2825
Bsp120I	GGGCCC	1 cut(s)	1554
Bsp1286I	GDGCHC	6 cut(s)	28, 694, 949, 1198, 1456, 1558
Bsp1407I	TGTACA	1 cut(s)	2717
Bsp1720I	GCTNAGC	2 cut(s)	2390, 2850
BspACI	CCGC	4 cut(s)	953, 1970, 2201, 2652
BspANI	GGCC	8 cut(s)	476, 1346, 1556, 1840, 2143, 2328, 2486, 2604
BspCNI	CTCAG	6 cut(s)	407, 499, 2382, 2416, 2772, 2863
BspFNI	CGCG	2 cut(s)	953, 2654
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	8 cut(s)	25, 77, 990, 1555, 1556, 2316, 2409, 2448
BspMAI	CTGCAG	1 cut(s)	982
BspMI	ACCTGC	3 cut(s)	850, 1309, 1609
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	2044
BsrGI	TGTACA	1 cut(s)	2717
BssECI	CCNNGG	4 cut(s)	358, 494, 2487, 2599
BssSI	CACGAG	1 cut(s)	1689
BssT1I	CCWWGG	2 cut(s)	358, 2599
Bst2BI	CACGAG	1 cut(s)	1689
Bst2UI	CCWGG	4 cut(s)	599, 1962, 2235, 2489
Bst6I	CTCTTC	3 cut(s)	1122, 1376, 2451
BstAUI	TGTACA	1 cut(s)	2717
BstBAI	YACGTR	2 cut(s)	689, 2150
BstC8I	GCNNGC	5 cut(s)	61, 65, 782, 1218, 1972
BstDEI	CTNAG	9 cut(s)	180, 212, 394, 486, 2378, 2390, 2403, 2780, 2850
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstF5I	GGATG	6 cut(s)	314, 1269, 1297, 1831, 2545, 2682
BstFNI	CGCG	2 cut(s)	953, 2654
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	740
BstMAI	GTCTC	1 cut(s)	794
BstMCI	CGRYCG	1 cut(s)	2661
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 746, 2209
BstNI	CCWGG	4 cut(s)	599, 1962, 2235, 2489
BstNSI	RCATGY	5 cut(s)	67, 582, 1540, 2200, 2226
BstSCI	CCNGG	5 cut(s)	597, 1540, 1960, 2233, 2487
BstSFI	CTRYAG	4 cut(s)	978, 1509, 2075, 2670
BstSLI	GKGCMC	2 cut(s)	28, 1558
BstUI	CGCG	2 cut(s)	953, 2654
BstV1I	GCAGC	4 cut(s)	832, 1123, 1846, 2598
BstV2I	GAAGAC	2 cut(s)	140, 1071
BstX2I	RGATCY	5 cut(s)	75, 96, 337, 1376, 2314
BstYI	RGATCY	5 cut(s)	75, 96, 337, 1376, 2314
Bsu36I	CCTNAGG	1 cut(s)	2403
BsuI	GTATCC	4 cut(s)	196, 492, 1376, 1798
BsuRI	GGCC	8 cut(s)	476, 1346, 1556, 1840, 2143, 2328, 2486, 2604
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	6 cut(s)	314, 1269, 1297, 1831, 2545, 2682
BtsI	GCAGTG	2 cut(s)	1602, 2278
BtsIMutI	CAGTG	7 cut(s)	48, 1068, 1602, 1734, 2067, 2101, 2278
BveI	ACCTGC	3 cut(s)	850, 1309, 1609
Cac8I	GCNNGC	5 cut(s)	61, 65, 782, 1218, 1972
CaiI	CAGNNNCTG	2 cut(s)	923, 1582
CciI	TCATGA	1 cut(s)	864
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	8 cut(s)	595, 1237, 1554, 1555, 2179, 2407, 2446, 2485
CseI	GACGC	2 cut(s)	713, 2643
Csp6I	GTAC	9 cut(s)	384, 1038, 1171, 1402, 2080, 2226, 2461, 2718, 2866
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviQI	GTAC	9 cut(s)	384, 1038, 1171, 1402, 2080, 2226, 2461, 2718, 2866
DdeI	CTNAG	9 cut(s)	180, 212, 394, 486, 2378, 2390, 2403, 2780, 2850
DrdI	GACNNNNNNGTC	1 cut(s)	2720
DseDI	GACNNNNNNGTC	1 cut(s)	2720
EaeI	YGGCCR	4 cut(s)	1344, 2141, 2326, 2602
Eam1104I	CTCTTC	3 cut(s)	1122, 1376, 2451
EarI	CTCTTC	3 cut(s)	1122, 1376, 2451
Eco130I	CCWWGG	2 cut(s)	358, 2599
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	1558
Eco31I	GGTCTC	1 cut(s)	794
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	5 cut(s)	595, 1237, 2179, 2407, 2446
Eco47III	AGCGCT	1 cut(s)	739
Eco57I	CTGAAG	3 cut(s)	1357, 1668, 2159
Eco72I	CACGTG	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	2403
Eco88I	CYCGRG	1 cut(s)	2825
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoO109I	RGGNCCY	6 cut(s)	595, 1237, 1554, 1555, 2407, 2485
EcoRI	GAATTC	1 cut(s)	2881
EcoRII	CCWGG	4 cut(s)	597, 1960, 2233, 2487
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	358, 2599
EcoT22I	ATGCAT	1 cut(s)	1437
EcoT38I	GRGCYC	1 cut(s)	1558
ErhI	CCWWGG	2 cut(s)	358, 2599
FalI	AAGNNNNNCTT	6 cut(s)	392, 424, 764, 796, 1098, 1130
FaqI	GGGAC	3 cut(s)	463, 481, 2440
FauI	CCCGC	1 cut(s)	1963
FauNDI	CATATG	1 cut(s)	1987
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	1161
Fnu4HI	GCNGC	5 cut(s)	846, 1112, 1860, 2201, 2612
FokI	GGATG	6 cut(s)	301, 1276, 1304, 1838, 2552, 2669
FriOI	GRGCYC	1 cut(s)	1558
Fsp4HI	GCNGC	5 cut(s)	846, 1112, 1860, 2201, 2612
FspBI	CTAG	5 cut(s)	321, 405, 1035, 1041, 2385
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	5 cut(s)	846, 1112, 1860, 2201, 2612
GsaI	CCCAGC	2 cut(s)	788, 1401
GsuI	CTGGAG	3 cut(s)	1710, 2256, 2590
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	8 cut(s)	476, 1346, 1556, 1840, 2143, 2328, 2486, 2604
HapII	CCGG	1 cut(s)	1541
HgaI	GACGC	2 cut(s)	713, 2643
HhaI	GCGC	1 cut(s)	740
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	2 cut(s)	2161, 2501
HindII	GTYRAC	2 cut(s)	2161, 2501
HindIII	AAGCTT	1 cut(s)	957
HpaII	CCGG	1 cut(s)	1541
HphI	GGTGA	4 cut(s)	483, 629, 1168, 1963
Hpy166II	GTNNAC	9 cut(s)	662, 1162, 1487, 1528, 2082, 2161, 2463, 2501, 2868
Hpy188I	TCNGA	9 cut(s)	268, 438, 624, 919, 1288, 1376, 2306, 2583, 2781
Hpy8I	GTNNAC	9 cut(s)	662, 1162, 1487, 1528, 2082, 2161, 2463, 2501, 2868
Hpy99I	CGWCG	1 cut(s)	2659
HpyAV	CCTTC	8 cut(s)	260, 328, 586, 870, 1250, 1692, 2417, 2705
HpyCH4IV	ACGT	6 cut(s)	50, 237, 688, 1059, 2006, 2149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 746, 2209
HpyF3I	CTNAG	9 cut(s)	180, 212, 394, 486, 2378, 2390, 2403, 2780, 2850
HpySE526I	ACGT	6 cut(s)	50, 237, 688, 1059, 2006, 2149
HspAI	GCGC	1 cut(s)	738
Ksp22I	TGATCA	1 cut(s)	619
LmnI	GCTCC	5 cut(s)	944, 988, 1459, 1729, 1776
Lsp1109I	GCAGC	4 cut(s)	832, 1123, 1846, 2598
LweI	GCATC	4 cut(s)	212, 736, 1462, 2530
MaeI	CTAG	5 cut(s)	321, 405, 1035, 1041, 2385
MaeII	ACGT	6 cut(s)	50, 237, 688, 1059, 2006, 2149
MaeIII	GTNAC	7 cut(s)	46, 489, 817, 1662, 1981, 2007, 2762
MfeI	CAATTG	2 cut(s)	276, 2361
MflI	RGATCY	5 cut(s)	75, 96, 337, 1376, 2314
MhlI	GDGCHC	6 cut(s)	28, 694, 949, 1198, 1456, 1558
MlsI	TGGCCA	2 cut(s)	2143, 2328
MluNI	TGGCCA	2 cut(s)	2143, 2328
MlyI	GAGTC	4 cut(s)	95, 445, 2278, 2791
MmeI	TCCRAC	2 cut(s)	350, 1330
Mox20I	TGGCCA	2 cut(s)	2143, 2328
Mph1103I	ATGCAT	1 cut(s)	1437
MscI	TGGCCA	2 cut(s)	2143, 2328
MseI	TTAA	9 cut(s)	158, 456, 587, 653, 771, 912, 972, 1976, 1995
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	2 cut(s)	2143, 2328
MspA1I	CMGCKG	1 cut(s)	1397
MspI	CCGG	1 cut(s)	1541
MspR9I	CCNGG	5 cut(s)	599, 1542, 1962, 2235, 2489
MunI	CAATTG	2 cut(s)	276, 2361
Mva1269I	GAATGC	2 cut(s)	782, 1435
MvaI	CCWGG	4 cut(s)	599, 1962, 2235, 2489
MvnI	CGCG	2 cut(s)	953, 2654
MwoI	GCNNNNNNNGC	3 cut(s)	405, 746, 2209
NciI	CCSGG	1 cut(s)	1542
NdeI	CATATG	1 cut(s)	1987
NlaIV	GGNNCC	8 cut(s)	25, 77, 990, 1555, 1556, 2316, 2409, 2448
NmuCI	GTSAC	4 cut(s)	46, 489, 1981, 2762
NsiI	ATGCAT	1 cut(s)	1437
NspI	RCATGY	5 cut(s)	67, 582, 1540, 2200, 2226
OliI	CACNNNNGTG	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	2825
PagI	TCATGA	1 cut(s)	864
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	1 cut(s)	2222
PcsI	WCGNNNNNNNCGW	1 cut(s)	2012
PctI	GAATGC	2 cut(s)	782, 1435
PfeI	GAWTC	8 cut(s)	124, 645, 1491, 1790, 1914, 2029, 2117, 2807
PflMI	CCANNNNNTGG	2 cut(s)	1582, 2150
PfoI	TCCNGGA	1 cut(s)	2233
PkrI	GCNGC	5 cut(s)	847, 1113, 1861, 2202, 2613
PleI	GAGTC	4 cut(s)	94, 445, 2278, 2790
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
PpsI	GAGTC	4 cut(s)	94, 445, 2278, 2790
Ppu21I	YACGTR	2 cut(s)	689, 2150
PpuMI	RGGWCCY	3 cut(s)	595, 1237, 2407
PscI	ACATGT	1 cut(s)	2222
Psp5II	RGGWCCY	3 cut(s)	595, 1237, 2407
Psp6I	CCWGG	4 cut(s)	597, 1960, 2233, 2487
PspCI	CACGTG	1 cut(s)	689
PspFI	CCCAGC	2 cut(s)	784, 1397
PspGI	CCWGG	4 cut(s)	597, 1960, 2233, 2487
PspN4I	GGNNCC	8 cut(s)	25, 77, 990, 1555, 1556, 2316, 2409, 2448
PspOMI	GGGCCC	1 cut(s)	1554
PspPI	GGNCC	8 cut(s)	595, 1237, 1554, 1555, 2179, 2407, 2446, 2485
PspPPI	RGGWCCY	3 cut(s)	595, 1237, 2407
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	2 cut(s)	923, 1582
PsuI	RGATCY	5 cut(s)	75, 96, 337, 1376, 2314
PvuII	CAGCTG	1 cut(s)	1397
RsaI	GTAC	9 cut(s)	385, 1039, 1172, 1403, 2081, 2227, 2462, 2719, 2867
RsaNI	GTAC	9 cut(s)	384, 1038, 1171, 1402, 2080, 2226, 2461, 2718, 2866
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	9 cut(s)	158, 456, 587, 653, 771, 912, 972, 1976, 1995
SatI	GCNGC	5 cut(s)	846, 1112, 1860, 2201, 2612
Sau96I	GGNCC	8 cut(s)	595, 1237, 1554, 1555, 2179, 2407, 2446, 2485
ScaI	AGTACT	1 cut(s)	1039
SchI	GAGTC	4 cut(s)	95, 445, 2278, 2791
ScrFI	CCNGG	5 cut(s)	599, 1542, 1962, 2235, 2489
SduI	GDGCHC	6 cut(s)	28, 694, 949, 1198, 1456, 1558
SfaNI	GCATC	4 cut(s)	212, 736, 1462, 2530
SfcI	CTRYAG	4 cut(s)	978, 1509, 2075, 2670
Sfr274I	CTCGAG	1 cut(s)	2825
SinI	GGWCC	5 cut(s)	595, 1237, 2179, 2407, 2446
SlaI	CTCGAG	1 cut(s)	2825
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	4 cut(s)	83, 885, 2615, 2825
SmoI	CTYRAG	4 cut(s)	83, 885, 2615, 2825
SpeI	ACTAGT	1 cut(s)	1040
SphI	GCATGC	1 cut(s)	67
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	4 cut(s)	953, 1970, 2201, 2652
SspMI	CTAG	5 cut(s)	321, 405, 1035, 1041, 2385
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	5 cut(s)	597, 1540, 1960, 2233, 2487
StyI	CCWWGG	2 cut(s)	358, 2599
TaiI	ACGT	6 cut(s)	53, 240, 691, 1062, 2009, 2152
TaqI	TCGA	6 cut(s)	288, 1763, 2282, 2661, 2826, 2879
TaqII	GACCGA	1 cut(s)	2647
TatI	WGTACW	6 cut(s)	1037, 1170, 2079, 2460, 2717, 2865
TauI	GCSGC	1 cut(s)	2203
TfiI	GAWTC	8 cut(s)	124, 645, 1491, 1790, 1914, 2029, 2117, 2807
Tru1I	TTAA	9 cut(s)	158, 456, 587, 653, 771, 912, 972, 1976, 1995
Tru9I	TTAA	9 cut(s)	158, 456, 587, 653, 771, 912, 972, 1976, 1995
TscAI	CASTG	7 cut(s)	48, 1075, 1602, 1734, 2067, 2101, 2278
TseFI	GTSAC	4 cut(s)	46, 489, 1981, 2762
TseI	GCWGC	4 cut(s)	845, 1111, 1859, 2611
Tsp45I	GTSAC	4 cut(s)	46, 489, 1981, 2762
TspDTI	ATGAA	8 cut(s)	573, 881, 1428, 1615, 1829, 1838, 2258, 2526
TspGWI	ACGGA	7 cut(s)	888, 955, 1194, 1203, 1439, 2171, 2544
TspRI	CASTG	7 cut(s)	48, 1075, 1602, 1734, 2067, 2101, 2278
Van91I	CCANNNNNTGG	2 cut(s)	1582, 2150
VpaK11BI	GGWCC	5 cut(s)	595, 1237, 2179, 2407, 2446
XagI	CCTNNNNNAGG	1 cut(s)	770
XapI	RAATTY	7 cut(s)	295, 343, 603, 1028, 1081, 2475, 2881
XceI	RCATGY	5 cut(s)	67, 582, 1540, 2200, 2226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2136
XhoI	CTCGAG	1 cut(s)	2825
XmiI	GTMKAC	1 cut(s)	1161
XspI	CTAG	5 cut(s)	321, 405, 1035, 1041, 2385
ZrmI	AGTACT	1 cut(s)	1039
Zsp2I	ATGCAT	1 cut(s)	1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.