Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006408.1

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Forward (+)

128480 .. 132386

Gene Structure 3907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006408.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

atgatctataataagggtttgaccctgtcttgccagtcaaagcagtgccacactagtggtgagattatcaattttatgactgttgatgctgagagggttggtgacttcacttggtacatgcatgacccatggatggtcgttctacaagttgctttagccctcttaattttgtataaaaatcttggccttgctgtaactgcaactttagttgcaacaatagttgttatgctggcaaatgttcctttggggaaattgcaagagaagtttcaggacaagttgatggagtcaaaggacagaaggatgaaggcaacatcggagattttaaggaacatgcggattctcaagctgcaggcatgggagatgaagtttttgtctaagattattgacctcaggaagactgagacaggatggttacgaaagtttgtttatacatcggccatgaccacatttgtcttctggggtgcccccacatttgtgtctgtggtcacttttgttgcttgcatgcttttggggatcccactggaatcagggaagatcttatctgcgcttgcaacgttcagaattcttcaagagcccatctacagtcttccagacacaatttcaatgatagcacagacaaaggtatcccttgatagaattgcatcgttcctttctcttgatgagttgaagcctgatgttatagagaaccttcctagaggtagttctgatactgcaattgaaatattggatgcaaatttctcttgggaattatcttcgcctaaccctacattgaaggatgtaaatctcaaagttatccatggtatgaaggttgctgtttgtggtaccgttggctcaggcaaatcaagcttactttcttgtattctgggagaagttcccaagatatctgggactcttaagttgtgtgggacaaaggcctatgtttctcagtcaccatggatacaaagtggtaagatagaacaaaacatattgtttggtaaagagatggacagagaaaggtacgagggggttcttgaagcatgttcgttgaagaaggaccttgaaattctatcatttggtgatcagacggttataggggaaaggggaatcaatttaagtggaggtcagaagcagagaatacaaattgcacgagctttgtaccaagatgctgatatctatctgtttgatgatccttttagtgctgttgatgctcatacaggatcccaccttttcaaggaatgcttgatgggcctcttgagttccaaaacagtaatctatgtcactcatcaagtggagttcttacctgctgctgatattgtcttggtcatgaaagacggaaagatcactcaagctggaaagttcaatgacattcttaattcaggaactgattttatggatcttgtgggagcacacaatgaagctttgtctgcgcttgattctgttggggtaggaccggttgaaaaaacaagcatcagcaaagaagataacaattcggctagtactactggggctgtccaaaaagtagacaacagagatgttcaagatagtaaaatagatgatttaggcgtgccaaaagggcagcttgttcaagaagaagagagagagaaaggtaaggttgggttttcagtgtactggaaatacattaccacagcatatggaggagctctcgttccttttatattacttgcacagattctctttcaactccttcaaattggaagcaattactggatggcttgggcaactcctgtgtcagcagacatgaaaccaactgttacaagctctacgcttataattgtctatgtggctttggctgttggaagttctttttgtatccttttcagatctctgcttcttgcaacagctgggtacaagacagccactatactcttcaataaaatgcacttgtgcatattccgtgctcccatgtcattcttcgatgccactccaagtggacgtatcttaaacagagcttctacagaccaaaatacagtggacatgaacatttcaaatcaaattggggcctttgccttctcaatgatacagcttttgggaattattgcagtgatgtctcaggtggcatggcaggttttcatcatatttatacctgtgattacagcctgtgtttggtatcagcaatattacataccttcagcacgagaactagcaagattggttggagtatgcaaagctcctgtgatacaacattttgccgaaacaatttcagggtcaactactattaggagcttcaatcaagaatctagattccgagataccaacatgaaactgatggatggatatggtcgaccaaagttctacacagcaggtgcaatggaatggctatgctttcgcttggatgtgttgtcatccattacatttgcattctctttaattttcttgatctctgttccagaaggagtgatagatccaggcattgctggcttagctgtcacatatggacttaacctaaacatgttacaagcttgggttatatggaatctttgtaatatggaaaacaagataatatctgtggagagaatactacagtatactactagtataccaagtgaacctcctctggtaatagattctaacagacctgatcattcctggccatcgcaaggaaaagttgatctgcatgatcttcaggtgcggtatgctccacacatgccacttgtgttgcggggtcttacatgctccttccctggaggaatgaaaactcttcatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

902

Amino Acids

99.9

Weight (kDa)

6.89

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1769
AarI	CACCTGC	1 cut(s)	2291
Acc36I	ACCTGC	3 cut(s)	1288, 2053, 2291
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	461, 821
AccI	GTMKAC	4 cut(s)	1500, 2281, 2525, 2536
AciI	CCGC	3 cut(s)	334, 2629, 2659
AclI	AACGTT	1 cut(s)	554
AclWI	GGATC	7 cut(s)	508, 521, 1160, 1191, 1204, 1380, 2396
AcoI	YGGCCR	2 cut(s)	435, 2588
AcsI	RAATTY	3 cut(s)	561, 733, 1041
AcuI	CTGAAG	2 cut(s)	2112, 2606
AfaI	GTAC	7 cut(s)	116, 823, 998, 1136, 1477, 1607, 1847
AfiI	CCNNNNNNNGG	4 cut(s)	133, 1210, 2103, 2597
AflII	CTTAAG	1 cut(s)	893
AflIII	ACRYGT	1 cut(s)	2448
AgeI	ACCGGT	1 cut(s)	1429
AhlI	ACTAGT	2 cut(s)	53, 2531
AjnI	CCWGG	3 cut(s)	2404, 2585, 2680
AleI	CACNNNNGTG	2 cut(s)	54, 473
AloI	GAACNNNNNNTCC	2 cut(s)	1629, 1661
Alw21I	GWGCWC	3 cut(s)	1387, 1642, 1900
Alw26I	GTCTC	2 cut(s)	395, 2052
AlwI	GGATC	7 cut(s)	508, 521, 1160, 1191, 1204, 1380, 2396
AlwNI	CAGNNNCTG	1 cut(s)	1361
AoxI	GGCC	6 cut(s)	184, 435, 912, 1225, 1998, 2588
ApeKI	GCWGC	3 cut(s)	346, 1283, 1555
ApoI	RAATTY	3 cut(s)	561, 733, 1041
AsiGI	ACCGGT	1 cut(s)	1429
Asp718I	GGTACC	1 cut(s)	821
AspLEI	GCGC	2 cut(s)	547, 1408
AspS9I	GGNCC	4 cut(s)	1033, 1225, 1427, 1998
AsuHPI	GGTGA	4 cut(s)	71, 113, 921, 1067
AvaII	GGWCC	2 cut(s)	1033, 1427
AxyI	CCTNAGG	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BalI	TGGCCA	1 cut(s)	2590
BamHI	GGATCC	2 cut(s)	513, 1196
BanI	GGYRCC	2 cut(s)	461, 821
BanII	GRGCYC	2 cut(s)	576, 1642
BauI	CACGAG	2 cut(s)	1125, 2133
BbsI	GAAGAC	3 cut(s)	401, 445, 578
Bbv12I	GWGCWC	3 cut(s)	1387, 1642, 1900
BbvI	GCAGC	3 cut(s)	333, 1270, 1567
BciT130I	CCWGG	3 cut(s)	2406, 2587, 2682
BciVI	GTATCC	3 cut(s)	634, 930, 1820
BclI	TGATCA	2 cut(s)	1057, 2578
BcoDI	GTCTC	2 cut(s)	395, 2052
BcuI	ACTAGT	2 cut(s)	53, 2531
BfaI	CTAG	6 cut(s)	54, 693, 1473, 2141, 2238, 2532
BfmI	CTRYAG	4 cut(s)	347, 580, 1953, 2519
BfrI	CTTAAG	1 cut(s)	893
BfuAI	ACCTGC	3 cut(s)	1288, 2053, 2291
BfuI	GTATCC	3 cut(s)	634, 930, 1820
BglI	GCCNNNNNGGC	1 cut(s)	1552
BglII	AGATCT	2 cut(s)	534, 1820
BisI	GCNGC	3 cut(s)	347, 1284, 1556
BlpI	GCTNAGC	1 cut(s)	2419
BlsI	GCNGC	3 cut(s)	348, 1285, 1557
BmcAI	AGTACT	1 cut(s)	1477
Bme1390I	CCNGG	3 cut(s)	2406, 2587, 2682
Bme18I	GGWCC	2 cut(s)	1033, 1427
BmgT120I	GGNCC	4 cut(s)	1033, 1225, 1427, 1998
BmiI	GGNNCC	5 cut(s)	463, 515, 823, 1198, 1999
BmrFI	CCNGG	3 cut(s)	2406, 2587, 2682
BmrI	ACTGGG	1 cut(s)	1491
BmsI	GCATC	7 cut(s)	76, 650, 718, 1132, 1174, 1455, 1906
BmuI	ACTGGG	1 cut(s)	1491
BpiI	GAAGAC	3 cut(s)	401, 445, 578
BplI	GAGNNNNNCTC	2 cut(s)	1626, 1658
BpmI	CTGGAG	1 cut(s)	2703
Bpu10I	CCTNAGC	1 cut(s)	832
Bpu1102I	GCTNAGC	1 cut(s)	2419
BpuEI	CTTGAG	3 cut(s)	326, 1252, 1308
BsaBI	GATNNNNATC	2 cut(s)	780, 1152
BsaJI	CCNNGG	4 cut(s)	128, 796, 932, 2680
BsaWI	WCCGGW	1 cut(s)	1429
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 1629, 1659
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 1210, 2103, 2597
Bse118I	RCCGGY	1 cut(s)	1429
Bse1I	ACTGG	5 cut(s)	34, 525, 1486, 1613, 1709
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	2 cut(s)	2313, 2409
Bse8I	GATNNNNATC	2 cut(s)	780, 1152
BseBI	CCWGG	3 cut(s)	2406, 2587, 2682
BseDI	CCNNGG	4 cut(s)	128, 796, 932, 2680
BseGI	GGATG	9 cut(s)	138, 306, 413, 733, 781, 1713, 2275, 2338, 2342
BseJI	GATNNNNATC	2 cut(s)	780, 1152
BseLI	CCNNNNNNNGG	4 cut(s)	133, 1210, 2103, 2597
BseMI	GCAATG	2 cut(s)	2313, 2409
BseMII	CTCAG	6 cut(s)	81, 390, 403, 846, 938, 2063
BseNI	ACTGG	5 cut(s)	34, 525, 1486, 1613, 1709
BseRI	GAGGAG	2 cut(s)	1650, 2541
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	3 cut(s)	333, 1270, 1567
BseYI	CCCAGC	1 cut(s)	1841
BshFI	GGCC	6 cut(s)	186, 437, 914, 1227, 2000, 2590
BshNI	GGYRCC	2 cut(s)	461, 821
BshTI	ACCGGT	1 cut(s)	1429
BsiHKAI	GWGCWC	3 cut(s)	1387, 1642, 1900
BsiSI	CCGG	1 cut(s)	1430
BslFI	GGGAC	2 cut(s)	901, 919
BslI	CCNNNNNNNGG	4 cut(s)	133, 1210, 2103, 2597
BsmAI	GTCTC	2 cut(s)	395, 2052
BsmFI	GGGAC	2 cut(s)	901, 919
BsmI	GAATGC	2 cut(s)	1220, 2357
BsnI	GGCC	6 cut(s)	186, 437, 914, 1227, 2000, 2590
Bsp1286I	GDGCHC	5 cut(s)	466, 576, 1387, 1642, 1900
Bsp1720I	GCTNAGC	1 cut(s)	2419
Bsp19I	CCATGG	3 cut(s)	128, 796, 932
BspACI	CCGC	3 cut(s)	334, 2629, 2659
BspANI	GGCC	6 cut(s)	186, 437, 914, 1227, 2000, 2590
BspCNI	CTCAG	6 cut(s)	82, 391, 402, 845, 937, 2062
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	5 cut(s)	463, 515, 823, 1198, 1999
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	3 cut(s)	1288, 2053, 2291
BspPI	GGATC	7 cut(s)	508, 521, 1160, 1191, 1204, 1380, 2396
BspT107I	GGYRCC	2 cut(s)	461, 821
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	2313, 2409
BsrFI	RCCGGY	1 cut(s)	1429
BsrI	ACTGG	5 cut(s)	34, 525, 1486, 1613, 1709
BssAI	RCCGGY	1 cut(s)	1429
BssECI	CCNNGG	4 cut(s)	128, 796, 932, 2680
BssNAI	GTATAC	2 cut(s)	2526, 2537
BssSI	CACGAG	2 cut(s)	1125, 2133
BssT1I	CCWWGG	3 cut(s)	128, 796, 932
Bst1107I	GTATAC	2 cut(s)	2526, 2537
Bst2BI	CACGAG	2 cut(s)	1125, 2133
Bst2UI	CCWGG	3 cut(s)	2406, 2587, 2682
Bst4CI	ACNGT	8 cut(s)	82, 584, 826, 1066, 1246, 1750, 1969, 2523
Bst6I	CTCTTC	3 cut(s)	1566, 1871, 2703
BstAFI	CTTAAG	1 cut(s)	893
BstC8I	GCNNGC	7 cut(s)	231, 351, 499, 503, 549, 1544, 2416
BstDEI	CTNAG	8 cut(s)	90, 375, 389, 399, 832, 924, 2049, 2419
BstDSI	CCRYGG	3 cut(s)	128, 796, 932
BstENI	CCTNNNNNAGG	1 cut(s)	1208
BstF5I	GGATG	9 cut(s)	138, 306, 413, 733, 781, 1713, 2275, 2338, 2342
BstHHI	GCGC	2 cut(s)	547, 1408
BstMAI	GTCTC	2 cut(s)	395, 2052
BstMWI	GCNNNNNNNGC	8 cut(s)	197, 843, 1184, 1224, 1403, 1552, 2415, 2420
BstNI	CCWGG	3 cut(s)	2406, 2587, 2682
BstNSI	RCATGY	7 cut(s)	121, 334, 505, 1020, 2452, 2647, 2673
BstSCI	CCNGG	3 cut(s)	2404, 2585, 2680
BstSFI	CTRYAG	4 cut(s)	347, 580, 1953, 2519
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	3 cut(s)	333, 1270, 1567
BstV2I	GAAGAC	3 cut(s)	401, 445, 578
BstX2I	RGATCY	6 cut(s)	513, 534, 1196, 1372, 1820, 2401
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	6 cut(s)	513, 534, 1196, 1372, 1820, 2401
BstZ17I	GTATAC	2 cut(s)	2526, 2537
Bsu36I	CCTNAGG	1 cut(s)	389
BsuI	GTATCC	3 cut(s)	634, 930, 1820
BsuRI	GGCC	6 cut(s)	186, 437, 914, 1227, 2000, 2590
BtgI	CCRYGG	3 cut(s)	128, 796, 932
BtgZI	GCGATG	1 cut(s)	2577
BtsCI	GGATG	9 cut(s)	138, 306, 413, 733, 781, 1713, 2275, 2338, 2342
BtsI	GCAGTG	2 cut(s)	50, 2046
BtsIMutI	CAGTG	5 cut(s)	50, 518, 1608, 1974, 2046
BveI	ACCTGC	3 cut(s)	1288, 2053, 2291
Cac8I	GCNNGC	7 cut(s)	231, 351, 499, 503, 549, 1544, 2416
CaiI	CAGNNNCTG	1 cut(s)	1361
CciI	TCATGA	1 cut(s)	1302
CfoI	GCGC	2 cut(s)	547, 1408
Cfr10I	RCCGGY	1 cut(s)	1429
Cfr13I	GGNCC	4 cut(s)	1033, 1225, 1427, 1998
Csp6I	GTAC	7 cut(s)	115, 822, 997, 1135, 1476, 1606, 1846
CspAI	ACCGGT	1 cut(s)	1429
CspCI	CAANNNNNGTGG	4 cut(s)	1075, 1110, 2637, 2672
CviQI	GTAC	7 cut(s)	115, 822, 997, 1135, 1476, 1606, 1846
DdeI	CTNAG	8 cut(s)	90, 375, 389, 399, 832, 924, 2049, 2419
EaeI	YGGCCR	2 cut(s)	435, 2588
Eam1104I	CTCTTC	3 cut(s)	1566, 1871, 2703
EarI	CTCTTC	3 cut(s)	1566, 1871, 2703
Ecl136II	GAGCTC	1 cut(s)	1640
Eco130I	CCWWGG	3 cut(s)	128, 796, 932
Eco147I	AGGCCT	1 cut(s)	914
Eco24I	GRGCYC	2 cut(s)	576, 1642
Eco32I	GATATC	2 cut(s)	882, 1150
Eco47I	GGWCC	2 cut(s)	1033, 1427
Eco53kI	GAGCTC	1 cut(s)	1640
Eco57I	CTGAAG	2 cut(s)	2112, 2606
Eco81I	CCTNAGG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	1640
EcoNI	CCTNNNNNAGG	1 cut(s)	1208
EcoO109I	RGGNCCY	2 cut(s)	1033, 1998
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	3 cut(s)	2404, 2585, 2680
EcoRV	GATATC	2 cut(s)	882, 1150
EcoT14I	CCWWGG	3 cut(s)	128, 796, 932
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	576, 1642
ErhI	CCWWGG	3 cut(s)	128, 796, 932
FalI	AAGNNNNNCTT	4 cut(s)	1202, 1234, 1542, 1574
FaqI	GGGAC	2 cut(s)	901, 919
FauI	CCCGC	1 cut(s)	2652
FauNDI	CATATG	2 cut(s)	1630, 2431
FbaI	TGATCA	2 cut(s)	1057, 2578
FblI	GTMKAC	4 cut(s)	1500, 2281, 2525, 2536
Fnu4HI	GCNGC	3 cut(s)	347, 1284, 1556
FokI	GGATG	9 cut(s)	145, 313, 420, 740, 788, 1720, 2282, 2329, 2345
FriOI	GRGCYC	2 cut(s)	576, 1642
Fsp4HI	GCNGC	3 cut(s)	347, 1284, 1556
FspBI	CTAG	6 cut(s)	54, 693, 1473, 2141, 2238, 2532
GlaI	GCGC	2 cut(s)	546, 1407
GluI	GCNGC	3 cut(s)	347, 1284, 1556
GsaI	CCCAGC	1 cut(s)	1845
GsuI	CTGGAG	1 cut(s)	2703
HaeIII	GGCC	6 cut(s)	186, 437, 914, 1227, 2000, 2590
HapII	CCGG	1 cut(s)	1430
HhaI	GCGC	2 cut(s)	547, 1408
Hin6I	GCGC	2 cut(s)	545, 1406
HinP1I	GCGC	2 cut(s)	545, 1406
HincII	GTYRAC	2 cut(s)	2208, 2282
HindII	GTYRAC	2 cut(s)	2208, 2282
HindIII	AAGCTT	3 cut(s)	844, 1395, 2457
HpaII	CCGG	1 cut(s)	1430
HphI	GGTGA	4 cut(s)	71, 113, 921, 1067
Hpy166II	GTNNAC	9 cut(s)	1501, 1606, 1931, 1972, 2208, 2282, 2526, 2537, 2546
Hpy188I	TCNGA	8 cut(s)	316, 560, 706, 1062, 1104, 1820, 2246, 2708
Hpy8I	GTNNAC	9 cut(s)	1501, 1606, 1931, 1972, 2208, 2282, 2526, 2537, 2546
HpyCH4III	ACNGT	8 cut(s)	82, 584, 826, 1066, 1246, 1750, 1969, 2523
HpyCH4IV	ACGT	2 cut(s)	554, 1933
HpyF10VI	GCNNNNNNNGC	8 cut(s)	197, 843, 1184, 1224, 1403, 1552, 2415, 2420
HpyF3I	CTNAG	8 cut(s)	90, 375, 389, 399, 832, 924, 2049, 2419
HpySE526I	ACGT	2 cut(s)	554, 1933
HspAI	GCGC	2 cut(s)	545, 1406
KpnI	GGTACC	1 cut(s)	825
Ksp22I	TGATCA	2 cut(s)	1057, 2578
LmnI	GCTCC	7 cut(s)	1382, 1637, 1903, 2173, 2220, 2641, 2678
Lsp1109I	GCAGC	3 cut(s)	333, 1270, 1567
LweI	GCATC	7 cut(s)	76, 650, 718, 1132, 1174, 1455, 1906
MaeI	CTAG	6 cut(s)	54, 693, 1473, 2141, 2238, 2532
MaeII	ACGT	2 cut(s)	554, 1933
MaeIII	GTNAC	9 cut(s)	101, 193, 411, 484, 927, 1255, 1750, 2425, 2451
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	6 cut(s)	513, 534, 1196, 1372, 1820, 2401
MhlI	GDGCHC	5 cut(s)	466, 576, 1387, 1642, 1900
MlsI	TGGCCA	1 cut(s)	2590
MluNI	TGGCCA	1 cut(s)	2590
MlyI	GAGTC	2 cut(s)	293, 883
MmeI	TCCRAC	2 cut(s)	1774, 2134
Mox20I	TGGCCA	1 cut(s)	2590
Mph1103I	ATGCAT	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	2590
MseI	TTAA	8 cut(s)	164, 323, 894, 1091, 1350, 1940, 2366, 2439
MslI	CAYNNNNRTG	2 cut(s)	54, 473
Msp20I	TGGCCA	1 cut(s)	2590
MspA1I	CMGCKG	1 cut(s)	1841
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	1 cut(s)	1430
MspR9I	CCNGG	3 cut(s)	2406, 2587, 2682
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	1220, 2357
MvaI	CCWGG	3 cut(s)	2406, 2587, 2682
MwoI	GCNNNNNNNGC	8 cut(s)	197, 843, 1184, 1224, 1403, 1552, 2415, 2420
NcoI	CCATGG	3 cut(s)	128, 796, 932
NdeI	CATATG	2 cut(s)	1630, 2431
NlaIV	GGNNCC	5 cut(s)	463, 515, 823, 1198, 1999
NmuCI	GTSAC	5 cut(s)	101, 484, 927, 1255, 2425
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	7 cut(s)	121, 334, 505, 1020, 2452, 2647, 2673
OliI	CACNNNNGTG	2 cut(s)	54, 473
PaeI	GCATGC	1 cut(s)	505
PagI	TCATGA	1 cut(s)	1302
PaqCI	CACCTGC	1 cut(s)	2291
PceI	AGGCCT	1 cut(s)	914
PciI	ACATGT	1 cut(s)	2448
PctI	GAATGC	2 cut(s)	1220, 2357
PfeI	GAWTC	9 cut(s)	337, 524, 1083, 1412, 1669, 2234, 2241, 2473, 2564
PflFI	GACNNNGTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	1429
PkrI	GCNGC	3 cut(s)	348, 1285, 1557
PleI	GAGTC	2 cut(s)	292, 883
PpsI	GAGTC	2 cut(s)	292, 883
PpuMI	RGGWCCY	1 cut(s)	1033
PscI	ACATGT	1 cut(s)	2448
PsiI	TTATAA	1 cut(s)	1769
Psp124BI	GAGCTC	1 cut(s)	1642
Psp1406I	AACGTT	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	1033
Psp6I	CCWGG	3 cut(s)	2404, 2585, 2680
PspFI	CCCAGC	1 cut(s)	1841
PspGI	CCWGG	3 cut(s)	2404, 2585, 2680
PspN4I	GGNNCC	5 cut(s)	463, 515, 823, 1198, 1999
PspPI	GGNCC	4 cut(s)	1033, 1225, 1427, 1998
PspPPI	RGGWCCY	1 cut(s)	1033
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	1361
PsuI	RGATCY	6 cut(s)	513, 534, 1196, 1372, 1820, 2401
PsyI	GACNNNGTC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	1841
RsaI	GTAC	7 cut(s)	116, 823, 998, 1136, 1477, 1607, 1847
RsaNI	GTAC	7 cut(s)	115, 822, 997, 1135, 1476, 1606, 1846
RseI	CAYNNNNRTG	2 cut(s)	54, 473
SacI	GAGCTC	1 cut(s)	1642
SalI	GTCGAC	1 cut(s)	2280
SaqAI	TTAA	8 cut(s)	164, 323, 894, 1091, 1350, 1940, 2366, 2439
SatI	GCNGC	3 cut(s)	347, 1284, 1556
Sau96I	GGNCC	4 cut(s)	1033, 1225, 1427, 1998
ScaI	AGTACT	1 cut(s)	1477
SchI	GAGTC	2 cut(s)	293, 883
ScrFI	CCNGG	3 cut(s)	2406, 2587, 2682
SduI	GDGCHC	5 cut(s)	466, 576, 1387, 1642, 1900
SfaNI	GCATC	7 cut(s)	76, 650, 718, 1132, 1174, 1455, 1906
SfcI	CTRYAG	4 cut(s)	347, 580, 1953, 2519
SinI	GGWCC	2 cut(s)	1033, 1427
SmiMI	CAYNNNNRTG	2 cut(s)	54, 473
SmlI	CTYRAG	4 cut(s)	341, 893, 1231, 1323
SmoI	CTYRAG	4 cut(s)	341, 893, 1231, 1323
SpeI	ACTAGT	2 cut(s)	53, 2531
SphI	GCATGC	1 cut(s)	505
SseBI	AGGCCT	1 cut(s)	914
SsiI	CCGC	3 cut(s)	334, 2629, 2659
SspI	AATATT	2 cut(s)	723, 2117
SspMI	CTAG	6 cut(s)	54, 693, 1473, 2141, 2238, 2532
SstI	GAGCTC	1 cut(s)	1642
StuI	AGGCCT	1 cut(s)	914
StyD4I	CCNGG	3 cut(s)	2404, 2585, 2680
StyI	CCWWGG	3 cut(s)	128, 796, 932
TaaI	ACNGT	8 cut(s)	82, 584, 826, 1066, 1246, 1750, 1969, 2523
TaiI	ACGT	2 cut(s)	557, 1936
TaqI	TCGA	2 cut(s)	1914, 2281
TatI	WGTACW	2 cut(s)	1475, 1605
TfiI	GAWTC	9 cut(s)	337, 524, 1083, 1412, 1669, 2234, 2241, 2473, 2564
Tru1I	TTAA	8 cut(s)	164, 323, 894, 1091, 1350, 1940, 2366, 2439
Tru9I	TTAA	8 cut(s)	164, 323, 894, 1091, 1350, 1940, 2366, 2439
TscAI	CASTG	5 cut(s)	50, 525, 1608, 1974, 2046
TseFI	GTSAC	5 cut(s)	101, 484, 927, 1255, 2425
TseI	GCWGC	3 cut(s)	346, 1283, 1555
Tsp45I	GTSAC	5 cut(s)	101, 484, 927, 1255, 2425
TspGWI	ACGGA	2 cut(s)	1326, 1883
TspRI	CASTG	5 cut(s)	50, 525, 1608, 1974, 2046
Tth111I	GACNNNGTC	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	1033, 1427
XagI	CCTNNNNNAGG	1 cut(s)	1208
XapI	RAATTY	3 cut(s)	561, 733, 1041
XbaI	TCTAGA	1 cut(s)	2237
XceI	RCATGY	7 cut(s)	121, 334, 505, 1020, 2452, 2647, 2673
XmiI	GTMKAC	4 cut(s)	1500, 2281, 2525, 2536
XspI	CTAG	6 cut(s)	54, 693, 1473, 2141, 2238, 2532
ZrmI	AGTACT	1 cut(s)	1477
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.